Wall clock time and date at job start Mon Mar 30 2020 02:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99849 * 2 1 4 4 H 1.48503 * 109.47170 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46682 * 299.99562 * 3 2 1 6 6 H 1.48495 * 109.47527 * 59.99404 * 3 2 1 7 7 C 1.38812 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99964 * 197.38305 * 7 2 1 9 9 N 1.36939 * 120.00027 * 17.38091 * 7 2 1 10 10 C 1.46919 * 120.63177 * 27.65751 * 9 7 2 11 11 C 1.53186 * 108.77925 * 126.41530 * 10 9 7 12 12 C 1.53036 * 109.34080 * 54.61488 * 11 10 9 13 13 C 1.53040 * 109.54163 * 298.68755 * 12 11 10 14 14 H 1.08996 * 109.49809 * 301.35199 * 13 12 11 15 15 N 1.46900 * 109.49947 * 181.28203 * 13 12 11 16 16 C 1.46897 * 111.00003 * 155.06559 * 15 13 12 17 17 C 1.53001 * 109.47208 * 179.97438 * 16 15 13 18 18 O 1.42900 * 109.46873 * 64.99628 * 17 16 15 19 19 C 1.46932 * 120.62652 * 207.68156 * 9 7 2 20 20 H 0.96993 * 120.00232 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.58588 * 246.20532 * 10 9 7 22 22 H 1.09008 * 109.58582 * 6.62114 * 10 9 7 23 23 H 1.08996 * 109.50277 * 174.58394 * 11 10 9 24 24 H 1.09004 * 109.49240 * 294.65221 * 11 10 9 25 25 H 1.09000 * 109.49155 * 178.64777 * 12 11 10 26 26 H 1.08999 * 109.43314 * 58.69296 * 12 11 10 27 27 H 1.00899 * 111.00236 * 31.10641 * 15 13 12 28 28 H 1.09000 * 109.46864 * 60.00173 * 16 15 13 29 29 H 1.08995 * 109.47227 * 300.00313 * 16 15 13 30 30 H 1.09008 * 109.47005 * 304.99901 * 17 16 15 31 31 H 1.09000 * 109.47505 * 185.00364 * 17 16 15 32 32 H 0.96700 * 113.99640 * 180.02562 * 18 17 16 33 33 H 1.09001 * 109.58757 * 113.80158 * 19 9 7 34 34 H 1.08993 * 109.70502 * 353.44047 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3963 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0533 -1.2233 0.2800 9 7 1.3725 -2.3612 -0.3532 10 6 0.2281 -2.3348 -1.2741 11 6 0.5010 -3.3050 -2.4277 12 6 0.8194 -4.6902 -1.8605 13 6 2.0746 -4.6101 -0.9886 14 1 2.9087 -4.2404 -1.5848 15 7 2.3970 -5.9460 -0.4693 16 6 3.8270 -6.0563 -0.1518 17 6 4.1235 -7.4579 0.3855 18 8 3.8891 -8.4217 -0.6432 19 6 1.8195 -3.6547 0.1815 20 1 -0.4850 0.8400 0.0004 21 1 -0.6742 -2.6411 -0.7447 22 1 0.0987 -1.3264 -1.6675 23 1 -0.3798 -3.3673 -3.0669 24 1 1.3493 -2.9470 -3.0111 25 1 0.9904 -5.3883 -2.6799 26 1 -0.0199 -5.0369 -1.2577 27 1 2.1143 -6.6644 -1.1190 28 1 4.0898 -5.3152 0.6030 29 1 4.4140 -5.8807 -1.0532 30 1 3.4723 -7.6668 1.2344 31 1 5.1644 -7.5123 0.7041 32 1 4.0570 -9.3347 -0.3723 33 1 1.0470 -4.0688 0.8296 34 1 2.7395 -3.5193 0.7500 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108133339.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:24 Heat of formation + Delta-G solvation = -60.108941 kcal Electronic energy + Delta-G solvation = -14885.522072 eV Core-core repulsion = 12431.458054 eV Total energy + Delta-G solvation = -2454.064018 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.70151 -38.01648 -36.13154 -34.24646 -32.33320 -31.00073 -28.02556 -27.18853 -23.97731 -23.27305 -22.30538 -20.69926 -18.74001 -18.39754 -16.97644 -16.50479 -16.18067 -15.91402 -15.56162 -15.03195 -14.66221 -14.34403 -14.22006 -13.78448 -13.43775 -13.03497 -12.95055 -12.74305 -12.44883 -12.13314 -12.02556 -11.90748 -11.70005 -11.33239 -11.11356 -10.85040 -10.56731 -9.39003 -8.69140 -7.88737 -5.34263 1.45366 1.46701 1.57881 2.49340 3.13889 3.26402 3.48387 3.81011 3.94703 4.10212 4.25479 4.32800 4.38132 4.50429 4.56531 4.72233 4.79046 4.92438 4.94595 5.00441 5.08770 5.19122 5.23540 5.31758 5.50274 5.62969 5.73646 6.08990 6.38772 6.55275 6.96403 7.13595 7.84682 8.36836 9.18180 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.043420 B = 0.007340 C = 0.006584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.704111 B = 3813.663974 C = 4251.649298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.050 4.050 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.265 4.265 8 H 0.064 0.936 9 N -0.611 5.611 10 C 0.173 3.827 11 C -0.129 4.129 12 C -0.102 4.102 13 C 0.084 3.916 14 H 0.028 0.972 15 N -0.681 5.681 16 C 0.054 3.946 17 C 0.085 3.915 18 O -0.593 6.593 19 C 0.163 3.837 20 H 0.251 0.749 21 H -0.004 1.004 22 H 0.054 0.946 23 H 0.075 0.925 24 H 0.049 0.951 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.349 0.651 28 H 0.078 0.922 29 H 0.026 0.974 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.398 0.602 33 H 0.012 0.988 34 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.469 -13.838 -2.200 15.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.797 3.203 4 H -0.192 1.192 5 H -0.214 1.214 6 H -0.217 1.217 7 C -0.395 4.395 8 H 0.082 0.918 9 N -0.335 5.335 10 C 0.048 3.952 11 C -0.169 4.169 12 C -0.140 4.140 13 C -0.027 4.027 14 H 0.046 0.954 15 N -0.314 5.314 16 C -0.075 4.075 17 C 0.007 3.993 18 O -0.402 6.402 19 C 0.037 3.963 20 H 0.060 0.940 21 H 0.014 0.986 22 H 0.073 0.927 23 H 0.093 0.907 24 H 0.068 0.932 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.168 0.832 28 H 0.097 0.903 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.248 0.752 33 H 0.030 0.970 34 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 6.060 -13.036 -1.868 14.497 hybrid contribution 0.648 0.655 -0.316 0.974 sum 6.708 -12.381 -2.184 14.250 Atomic orbital electron populations 1.70203 1.06723 1.25877 1.55298 1.25806 0.96070 1.01525 1.01142 0.85189 0.78529 0.79671 0.76943 1.19187 1.21422 1.21698 1.19534 0.92913 0.86130 1.40962 0.91847 1.44322 1.35930 1.02039 1.51213 1.20647 0.87693 0.97841 0.89040 1.22013 1.00987 0.95666 0.98207 1.21508 0.97163 0.96863 0.98486 1.21807 0.96518 0.89142 0.95248 0.95388 1.60405 1.17289 1.03830 1.49871 1.22102 0.88422 0.97047 0.99925 1.22171 1.00065 0.87156 0.89910 1.86402 1.92276 1.20716 1.40791 1.20835 0.96664 0.85191 0.93582 0.94003 0.98573 0.92714 0.90650 0.93223 0.90730 0.92114 0.83211 0.90323 0.95543 0.92391 0.91287 0.75233 0.97043 0.93920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.71 11.19 21.65 0.24 -56.47 16 2 C -0.05 -2.88 4.91 84.86 0.42 -2.46 16 3 Si 0.97 45.74 29.59 68.60 2.03 47.77 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 6 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 7 C -0.27 -15.19 9.59 84.03 0.81 -14.39 16 8 H 0.06 3.56 7.89 -2.91 -0.02 3.53 16 9 N -0.61 -32.41 2.99 -699.08 -2.09 -34.50 16 10 C 0.17 8.76 5.31 86.36 0.46 9.22 16 11 C -0.13 -5.04 6.08 30.67 0.19 -4.85 16 12 C -0.10 -3.50 5.17 30.62 0.16 -3.35 16 13 C 0.08 3.08 2.64 45.00 0.12 3.20 16 14 H 0.03 1.10 7.80 -2.39 -0.02 1.08 16 15 N -0.68 -20.76 6.31 -491.17 -3.10 -23.86 16 16 C 0.05 1.45 5.90 86.30 0.51 1.96 16 17 C 0.08 1.67 7.39 71.98 0.53 2.20 16 18 O -0.59 -11.50 13.18 -148.98 -1.96 -13.46 16 19 C 0.16 7.37 5.98 86.36 0.52 7.89 16 20 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 21 H 0.00 -0.21 8.14 -2.38 -0.02 -0.22 16 22 H 0.05 3.09 6.04 -2.38 -0.01 3.08 16 23 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 24 H 0.05 1.96 8.14 -2.38 -0.02 1.95 16 25 H 0.07 2.13 8.10 -2.39 -0.02 2.11 16 26 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 27 H 0.35 9.87 7.89 -89.70 -0.71 9.16 16 28 H 0.08 2.19 7.56 -2.39 -0.02 2.17 16 29 H 0.03 0.73 8.06 -2.39 -0.02 0.72 16 30 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.40 3.75 9.12 -74.06 -0.68 3.07 16 33 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.04 1.91 7.41 -2.39 -0.02 1.89 16 Total: -1.00 -66.89 272.72 -1.48 -68.37 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -0.30 Total: 12.74 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 3.70 Total: -0.58 kcal Atomic # 7 Polarization: -109.88 SS G_CDS: -4.95 Total: -114.83 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -1.96 Total: -13.46 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -66.89 -1.48 -68.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108133339.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.260 kcal (2) G-P(sol) polarization free energy of solvation -66.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds