Wall clock time and date at job start Mon Mar 30 2020 03:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 111.00167 * 2 1 4 4 C 1.52998 * 109.47254 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.50935 * 60.00082 * 4 3 2 6 6 C 1.53099 * 109.50567 * 180.08437 * 4 3 2 7 7 N 1.47017 * 109.25648 * 176.73861 * 6 4 3 8 8 C 1.46897 * 111.00057 * 177.65161 * 7 6 4 9 9 C 1.50702 * 109.47421 * 57.63070 * 8 7 6 10 10 H 1.07997 * 119.99672 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00297 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99718 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 119.99954 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47445 * 60.00258 * 13 11 9 15 15 H 1.48505 * 109.46927 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47318 * 300.00070 * 13 11 9 17 17 C 1.47019 * 110.78939 * 301.45043 * 7 6 4 18 18 C 1.53101 * 109.25664 * 58.58962 * 17 7 6 19 19 O 1.43014 * 109.26112 * 303.15310 * 18 17 7 20 20 H 1.09002 * 109.47401 * 300.00266 * 1 2 3 21 21 H 1.09001 * 109.46874 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46970 * 60.00412 * 1 2 3 23 23 H 1.00900 * 110.99922 * 123.94863 * 2 1 3 24 24 H 1.09003 * 109.47157 * 300.00018 * 3 2 1 25 25 H 1.09000 * 109.47267 * 59.99048 * 3 2 1 26 26 H 1.09002 * 109.50683 * 296.71729 * 6 4 3 27 27 H 1.09008 * 109.50870 * 56.84719 * 6 4 3 28 28 H 1.09000 * 109.47444 * 177.63194 * 8 7 6 29 29 H 1.09003 * 109.46923 * 297.63227 * 8 7 6 30 30 H 0.97000 * 119.99745 * 179.97438 * 12 11 9 31 31 H 1.08999 * 109.50773 * 298.65909 * 17 7 6 32 32 H 1.08989 * 109.54443 * 178.54794 * 17 7 6 33 33 H 1.08996 * 109.50526 * 183.21568 * 18 17 7 34 34 H 1.09001 * 109.50539 * 63.08686 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5249 1.3306 0.0006 5 1 3.8755 0.8072 -0.8889 6 6 4.0744 2.7595 0.0028 7 7 5.5418 2.7146 0.0823 8 6 6.1134 4.0668 0.0308 9 6 5.5467 4.8950 1.1551 10 1 4.8335 4.4602 1.8397 11 6 5.9387 6.2078 1.3098 12 7 6.8068 6.7375 0.4758 13 14 5.2367 7.2341 2.7037 14 1 5.5776 6.6025 4.0038 15 1 5.8136 8.6015 2.6508 16 1 3.7605 7.3145 2.5645 17 6 5.9772 2.0044 1.2937 18 6 5.4085 0.5830 1.2776 19 8 3.9839 0.6461 1.1695 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8901 23 1 1.8306 -0.5261 0.7814 24 1 1.6460 1.8948 -0.8900 25 1 1.6459 1.8948 0.8899 26 1 3.7744 3.2663 -0.9145 27 1 3.6803 3.2999 0.8635 28 1 7.1969 4.0075 0.1338 29 1 5.8640 4.5306 -0.9235 30 1 7.0822 7.6612 0.5843 31 1 5.6134 2.5319 2.1755 32 1 7.0659 1.9606 1.3192 33 1 5.6812 0.0714 2.2006 34 1 5.8144 0.0383 0.4252 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126302422.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:54 Heat of formation + Delta-G solvation = -43.578500 kcal Electronic energy + Delta-G solvation = -14950.705752 eV Core-core repulsion = 12497.358548 eV Total energy + Delta-G solvation = -2453.347204 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.12309 -35.97587 -35.00556 -32.39579 -31.24699 -28.37098 -26.69696 -25.01274 -23.31688 -22.58378 -21.08658 -19.57484 -16.51954 -16.27394 -15.80641 -15.44366 -14.65116 -14.47275 -14.23975 -13.73552 -13.43671 -13.39992 -12.82426 -12.12009 -11.81607 -11.69714 -11.55979 -11.16002 -10.99735 -10.86632 -10.65463 -10.35374 -10.19427 -9.82056 -9.67200 -8.99384 -8.47002 -8.40533 -7.26312 -6.06885 -4.16226 3.25727 3.30842 3.33296 4.11630 4.28673 4.37171 4.96562 5.22293 5.25101 5.36831 5.44492 5.54576 5.61442 5.74679 5.80309 5.82775 5.86099 5.96563 6.12868 6.18453 6.52938 6.66122 6.76382 7.00942 7.18382 7.44198 7.46858 7.60943 7.84708 7.95841 8.18149 8.23843 8.93174 9.50685 10.98436 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.034636 B = 0.007837 C = 0.007088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.208497 B = 3571.752865 C = 3949.418661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.693 5.693 3 C 0.068 3.932 4 C 0.094 3.906 5 H 0.067 0.933 6 C 0.034 3.966 7 N -0.539 5.539 8 C 0.187 3.813 9 C -0.552 4.552 10 H 0.057 0.943 11 C 0.066 3.934 12 N -0.890 5.890 13 Si 0.890 3.110 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.277 1.277 17 C 0.024 3.976 18 C 0.068 3.932 19 O -0.391 6.391 20 H 0.019 0.981 21 H 0.064 0.936 22 H 0.063 0.937 23 H 0.349 0.651 24 H 0.084 0.916 25 H 0.036 0.964 26 H 0.074 0.926 27 H 0.049 0.951 28 H 0.032 0.968 29 H 0.033 0.967 30 H 0.263 0.737 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.544 -10.759 0.314 13.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.324 5.324 3 C -0.062 4.062 4 C 0.036 3.964 5 H 0.085 0.915 6 C -0.095 4.095 7 N -0.264 5.264 8 C 0.062 3.938 9 C -0.591 4.591 10 H 0.075 0.925 11 C -0.137 4.137 12 N -0.529 5.529 13 Si 0.717 3.283 14 H -0.203 1.203 15 H -0.211 1.211 16 H -0.203 1.203 17 C -0.105 4.105 18 C -0.009 4.009 19 O -0.311 6.311 20 H 0.038 0.962 21 H 0.083 0.917 22 H 0.081 0.919 23 H 0.167 0.833 24 H 0.102 0.898 25 H 0.055 0.945 26 H 0.092 0.908 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.337 -10.991 -0.698 13.233 hybrid contribution -0.590 1.693 2.250 2.877 sum -7.927 -9.298 1.552 12.316 Atomic orbital electron populations 1.22185 0.88316 1.01503 1.00261 1.60387 1.07156 1.14340 1.50554 1.21988 0.93218 0.89771 1.01189 1.22237 0.92608 0.93083 0.88468 0.91508 1.22497 0.90323 0.94565 1.02115 1.62729 1.06914 1.21066 1.35676 1.19764 0.95281 0.82054 0.96744 1.21703 1.26306 0.97035 1.14079 0.92531 1.24957 0.94840 0.97810 0.96108 1.69933 1.31835 1.14365 1.36724 0.86694 0.79394 0.79432 0.82737 1.20259 1.21107 1.20258 1.22564 1.00226 0.93774 0.93917 1.22648 0.80576 0.96705 1.00979 1.87798 1.21837 1.77116 1.44310 0.96211 0.91684 0.91863 0.83285 0.89762 0.94538 0.90760 0.93269 0.95002 0.94909 0.92688 0.93526 0.90795 0.89533 0.93114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.70 60.07 0.64 0.93 16 2 N -0.69 -9.14 6.86 -121.13 -0.83 -9.97 16 3 C 0.07 0.99 5.42 -3.83 -0.02 0.97 16 4 C 0.09 1.59 3.08 -26.68 -0.08 1.51 16 5 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 6 C 0.03 0.69 4.56 -3.71 -0.02 0.67 16 7 N -0.54 -11.78 4.93 -235.74 -1.16 -12.94 16 8 C 0.19 4.85 5.15 -4.98 -0.03 4.82 16 9 C -0.55 -15.23 7.66 -34.44 -0.26 -15.50 16 10 H 0.06 1.56 5.79 -52.49 -0.30 1.26 16 11 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 12 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 13 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 C 0.02 0.47 5.39 -3.71 -0.02 0.45 16 18 C 0.07 1.10 7.01 37.21 0.26 1.37 16 19 O -0.39 -6.76 9.81 -35.23 -0.35 -7.11 16 20 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 21 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.35 4.60 8.21 -39.29 -0.32 4.28 16 24 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 27 H 0.05 1.09 6.42 -51.92 -0.33 0.75 16 28 H 0.03 0.88 8.11 -51.93 -0.42 0.46 16 29 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.05 1.02 6.93 -51.93 -0.36 0.66 16 32 H 0.07 1.41 8.12 -51.94 -0.42 0.99 16 33 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 273.49 15.07 4.12 4.12 Total: -1.00 -29.29 273.49 -7.65 -36.94 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -5.53 Total: 0.94 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 0.38 Total: -3.03 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -1.26 Total: -48.32 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.35 Total: -7.11 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.29 -7.65 -36.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126302422.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.635 kcal (2) G-P(sol) polarization free energy of solvation -29.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds