Wall clock time and date at job start Mon Mar 30 2020 03:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 111.00167 * 2 1 4 4 C 1.52998 * 109.47254 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.50935 * 60.00082 * 4 3 2 6 6 C 1.53099 * 109.50567 * 180.08437 * 4 3 2 7 7 N 1.47017 * 109.25648 * 176.73861 * 6 4 3 8 8 C 1.46897 * 111.00057 * 177.65161 * 7 6 4 9 9 C 1.50702 * 109.47421 * 57.63070 * 8 7 6 10 10 H 1.07997 * 119.99672 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00297 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99718 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 119.99954 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47445 * 60.00258 * 13 11 9 15 15 H 1.48505 * 109.46927 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47318 * 300.00070 * 13 11 9 17 17 C 1.47019 * 110.78939 * 301.45043 * 7 6 4 18 18 C 1.53101 * 109.25664 * 58.58962 * 17 7 6 19 19 O 1.43014 * 109.26112 * 303.15310 * 18 17 7 20 20 H 1.09002 * 109.47401 * 300.00266 * 1 2 3 21 21 H 1.09001 * 109.46874 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46970 * 60.00412 * 1 2 3 23 23 H 1.00900 * 110.99922 * 123.94863 * 2 1 3 24 24 H 1.09003 * 109.47157 * 300.00018 * 3 2 1 25 25 H 1.09000 * 109.47267 * 59.99048 * 3 2 1 26 26 H 1.09002 * 109.50683 * 296.71729 * 6 4 3 27 27 H 1.09008 * 109.50870 * 56.84719 * 6 4 3 28 28 H 1.09000 * 109.47444 * 177.63194 * 8 7 6 29 29 H 1.09003 * 109.46923 * 297.63227 * 8 7 6 30 30 H 0.97000 * 119.99745 * 179.97438 * 12 11 9 31 31 H 1.08999 * 109.50773 * 298.65909 * 17 7 6 32 32 H 1.08989 * 109.54443 * 178.54794 * 17 7 6 33 33 H 1.08996 * 109.50526 * 183.21568 * 18 17 7 34 34 H 1.09001 * 109.50539 * 63.08686 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5249 1.3306 0.0006 5 1 3.8755 0.8072 -0.8889 6 6 4.0744 2.7595 0.0028 7 7 5.5418 2.7146 0.0823 8 6 6.1134 4.0668 0.0308 9 6 5.5467 4.8950 1.1551 10 1 4.8335 4.4602 1.8397 11 6 5.9387 6.2078 1.3098 12 7 6.8068 6.7375 0.4758 13 14 5.2367 7.2341 2.7037 14 1 5.5776 6.6025 4.0038 15 1 5.8136 8.6015 2.6508 16 1 3.7605 7.3145 2.5645 17 6 5.9772 2.0044 1.2937 18 6 5.4085 0.5830 1.2776 19 8 3.9839 0.6461 1.1695 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8901 23 1 1.8306 -0.5261 0.7814 24 1 1.6460 1.8948 -0.8900 25 1 1.6459 1.8948 0.8899 26 1 3.7744 3.2663 -0.9145 27 1 3.6803 3.2999 0.8635 28 1 7.1969 4.0075 0.1338 29 1 5.8640 4.5306 -0.9235 30 1 7.0822 7.6612 0.5843 31 1 5.6134 2.5319 2.1755 32 1 7.0659 1.9606 1.3192 33 1 5.6812 0.0714 2.2006 34 1 5.8144 0.0383 0.4252 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126302422.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:53 Heat of formation + Delta-G solvation = -66.708621 kcal Electronic energy + Delta-G solvation = -14951.708749 eV Core-core repulsion = 12497.358548 eV Total energy + Delta-G solvation = -2454.350202 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.61256 -37.34326 -36.45716 -34.48153 -32.57997 -30.12074 -28.17868 -26.69847 -24.55827 -24.25674 -22.55542 -21.22813 -18.60906 -17.54788 -17.27948 -16.80837 -16.49137 -16.00873 -15.44501 -15.36795 -14.87677 -14.72117 -14.44297 -13.70804 -13.35734 -13.16985 -12.93152 -12.77107 -12.63487 -12.57420 -12.22923 -12.12546 -11.91330 -11.85712 -11.26674 -10.65174 -10.49225 -9.42398 -9.13777 -8.20903 -6.40483 1.33939 1.34914 1.43563 2.33377 2.79544 3.03753 3.07160 3.45838 4.03602 4.10772 4.20746 4.25987 4.41006 4.48149 4.51779 4.63178 4.67436 4.73027 4.78612 5.01805 5.04231 5.04659 5.16577 5.17600 5.26302 5.68157 5.94609 5.98630 6.14642 6.22514 6.39204 6.44770 6.78224 7.30931 8.82173 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.034636 B = 0.007837 C = 0.007088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.208497 B = 3571.752865 C = 3949.418661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.698 5.698 3 C 0.075 3.925 4 C 0.105 3.895 5 H 0.070 0.930 6 C 0.037 3.963 7 N -0.540 5.540 8 C 0.200 3.800 9 C -0.561 4.561 10 H 0.053 0.947 11 C 0.014 3.986 12 N -0.924 5.924 13 Si 0.957 3.043 14 H -0.271 1.271 15 H -0.278 1.278 16 H -0.270 1.270 17 C 0.023 3.977 18 C 0.075 3.925 19 O -0.394 6.394 20 H 0.021 0.979 21 H 0.082 0.918 22 H 0.068 0.932 23 H 0.349 0.651 24 H 0.094 0.906 25 H 0.028 0.972 26 H 0.071 0.929 27 H 0.025 0.975 28 H 0.009 0.991 29 H 0.008 0.992 30 H 0.267 0.733 31 H 0.022 0.978 32 H 0.076 0.924 33 H 0.119 0.881 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.737 -11.838 1.054 14.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.329 5.329 3 C -0.055 4.055 4 C 0.047 3.953 5 H 0.088 0.912 6 C -0.092 4.092 7 N -0.264 5.264 8 C 0.073 3.927 9 C -0.600 4.600 10 H 0.071 0.929 11 C -0.186 4.186 12 N -0.563 5.563 13 Si 0.782 3.218 14 H -0.196 1.196 15 H -0.204 1.204 16 H -0.195 1.195 17 C -0.106 4.106 18 C -0.002 4.002 19 O -0.313 6.313 20 H 0.040 0.960 21 H 0.101 0.899 22 H 0.086 0.914 23 H 0.167 0.833 24 H 0.112 0.888 25 H 0.047 0.953 26 H 0.090 0.910 27 H 0.043 0.957 28 H 0.027 0.973 29 H 0.026 0.974 30 H 0.076 0.924 31 H 0.040 0.960 32 H 0.094 0.906 33 H 0.136 0.864 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.545 -12.094 0.044 14.808 hybrid contribution -0.202 1.988 1.987 2.819 sum -8.746 -10.106 2.031 13.518 Atomic orbital electron populations 1.22267 0.86594 1.02832 1.00597 1.60397 1.08767 1.13108 1.50609 1.21892 0.91463 0.90863 1.01323 1.22147 0.94084 0.90525 0.88540 0.91215 1.22525 0.88967 0.96869 1.00865 1.62661 1.08120 1.18655 1.36996 1.19433 0.94005 0.84167 0.95105 1.21903 1.26183 0.97567 1.14323 0.92874 1.25801 0.95114 0.99059 0.98613 1.70049 1.32982 1.14861 1.38416 0.85627 0.78830 0.77836 0.79534 1.19608 1.20354 1.19548 1.22665 1.00635 0.95553 0.91738 1.22730 0.79927 0.94266 1.03270 1.87812 1.22347 1.76756 1.44425 0.96015 0.89903 0.91352 0.83278 0.88810 0.95333 0.91029 0.95663 0.97319 0.97413 0.92435 0.95964 0.90558 0.86362 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.70 127.69 1.37 1.86 16 2 N -0.70 -16.79 6.86 -537.14 -3.68 -20.48 16 3 C 0.07 2.05 5.42 86.30 0.47 2.52 16 4 C 0.11 3.41 3.08 30.63 0.09 3.50 16 5 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 6 C 0.04 1.48 4.56 86.31 0.39 1.88 16 7 N -0.54 -23.85 4.93 -899.75 -4.44 -28.29 16 8 C 0.20 10.68 5.15 85.56 0.44 11.12 16 9 C -0.56 -31.53 7.66 25.60 0.20 -31.33 16 10 H 0.05 2.98 5.79 -2.91 -0.02 2.96 16 11 C 0.01 0.79 5.46 84.65 0.46 1.26 16 12 N -0.92 -55.08 13.29 21.45 0.28 -54.79 16 13 Si 0.96 44.11 29.54 68.60 2.03 46.14 16 14 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 15 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 16 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 17 C 0.02 0.89 5.39 86.31 0.46 1.36 16 18 C 0.07 2.27 7.01 72.02 0.50 2.77 16 19 O -0.39 -12.83 9.81 -148.98 -1.46 -14.29 16 20 H 0.02 0.40 8.14 -2.39 -0.02 0.38 16 21 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 23 H 0.35 8.37 8.21 -89.69 -0.74 7.63 16 24 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 25 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 27 H 0.03 1.13 6.42 -2.38 -0.02 1.11 16 28 H 0.01 0.50 8.11 -2.39 -0.02 0.48 16 29 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 31 H 0.02 0.97 6.93 -2.39 -0.02 0.95 16 32 H 0.08 2.90 8.12 -2.39 -0.02 2.88 16 33 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 34 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -62.48 273.49 -2.55 -65.03 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 0.33 Total: 11.77 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: 4.39 Total: -5.08 kcal Atomic # 7 Polarization: -95.72 SS G_CDS: -7.84 Total: -103.56 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -1.46 Total: -14.29 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -62.48 -2.55 -65.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126302422.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.679 kcal (2) G-P(sol) polarization free energy of solvation -62.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds