Wall clock time and date at job start Mon Mar 30 2020 03:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 110.99932 * 2 1 4 4 C 1.50694 * 109.47066 * 293.95260 * 3 2 1 5 5 H 1.08000 * 120.00563 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99902 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.46907 * 111.00071 * 123.95245 * 2 1 3 13 13 C 1.53000 * 109.46762 * 66.04837 * 12 2 1 14 14 H 1.09001 * 109.50482 * 304.99984 * 13 12 2 15 15 C 1.53099 * 109.50255 * 184.91706 * 13 12 2 16 16 N 1.47018 * 109.25670 * 183.21868 * 15 13 12 17 17 C 1.47015 * 110.75561 * 58.61068 * 16 15 13 18 18 C 1.53096 * 109.25764 * 301.38685 * 17 16 15 19 19 O 1.43016 * 109.29608 * 56.82633 * 18 17 16 20 20 H 1.09004 * 109.46699 * 60.00180 * 1 2 3 21 21 H 1.09000 * 109.46908 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47502 * 300.00034 * 1 2 3 23 23 H 1.09007 * 109.47052 * 173.94945 * 3 2 1 24 24 H 1.09003 * 109.46808 * 53.95638 * 3 2 1 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 1.08999 * 109.46818 * 186.04569 * 12 2 1 27 27 H 1.08997 * 109.46956 * 306.04778 * 12 2 1 28 28 H 1.09004 * 109.50837 * 303.14549 * 15 13 12 29 29 H 1.08998 * 109.50741 * 63.23789 * 15 13 12 30 30 H 1.00901 * 111.00204 * 182.39483 * 16 15 13 31 31 H 1.08999 * 109.50393 * 61.32222 * 17 16 15 32 32 H 1.08992 * 109.50556 * 181.41016 * 17 16 15 33 33 H 1.09004 * 109.50887 * 176.78129 * 18 17 16 34 34 H 1.09001 * 109.50551 * 296.87071 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0746 1.5113 -2.0488 6 6 2.0277 3.3492 -1.5289 7 7 2.7128 4.0016 -0.6153 8 14 1.5839 4.1864 -3.1387 9 1 2.1159 5.5729 -3.1386 10 1 2.1757 3.4287 -4.2703 11 1 0.1067 4.2236 -3.2865 12 6 1.9954 -0.7660 1.1376 13 6 1.6315 -2.2426 0.9703 14 1 0.5532 -2.3395 0.8432 15 6 2.0718 -3.0215 2.2126 16 7 1.7897 -4.4506 2.0141 17 6 2.4895 -4.9596 0.8257 18 6 2.0450 -4.1613 -0.4027 19 8 2.2974 -2.7713 -0.1796 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 3.0797 1.3444 0.1083 24 1 1.5610 1.9273 0.8310 25 1 2.9880 4.9175 -0.7776 26 1 3.0797 -0.6611 1.1756 27 1 1.5611 -0.3872 2.0628 28 1 3.1410 -2.8802 2.3709 29 1 1.5240 -2.6591 3.0825 30 1 2.0344 -4.9849 2.8344 31 1 3.5654 -4.8493 0.9617 32 1 2.2468 -6.0126 0.6835 33 1 2.6034 -4.4969 -1.2766 34 1 0.9791 -4.3152 -0.5706 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126637125.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:34 Heat of formation + Delta-G solvation = -35.822420 kcal Electronic energy + Delta-G solvation = -14801.405525 eV Core-core repulsion = 12348.394649 eV Total energy + Delta-G solvation = -2453.010875 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.31245 -36.36336 -34.42025 -32.68448 -31.34633 -27.81477 -26.88260 -25.58106 -24.02849 -22.17328 -20.32430 -19.99463 -16.78326 -16.23029 -16.16351 -15.06778 -14.79407 -14.54932 -14.32556 -13.90586 -13.80344 -13.34536 -12.90905 -12.04256 -11.84550 -11.63095 -11.37878 -11.17597 -10.84628 -10.83287 -10.67856 -10.46363 -10.17849 -9.68076 -9.43468 -9.13470 -8.58211 -8.37358 -7.12364 -5.96811 -3.97414 3.38215 3.41449 3.45284 3.98943 4.04518 4.47626 4.82525 4.97880 5.10138 5.22944 5.31309 5.37041 5.42538 5.53251 5.66896 5.78278 5.88736 5.92605 6.10790 6.22662 6.37968 6.44679 6.74259 6.81490 7.12646 7.34158 7.39051 7.54468 7.87063 8.16303 8.27926 8.62691 9.10051 9.66240 11.14266 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.058317 B = 0.006270 C = 0.006050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.021169 B = 4464.419657 C = 4626.809311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.531 5.531 3 C 0.193 3.807 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.288 1.288 10 H -0.276 1.276 11 H -0.278 1.278 12 C 0.062 3.938 13 C 0.099 3.901 14 H 0.065 0.935 15 C 0.024 3.976 16 N -0.689 5.689 17 C 0.019 3.981 18 C 0.060 3.940 19 O -0.357 6.357 20 H 0.073 0.927 21 H 0.044 0.956 22 H 0.010 0.990 23 H 0.030 0.970 24 H -0.010 1.010 25 H 0.261 0.739 26 H 0.074 0.926 27 H 0.037 0.963 28 H 0.041 0.959 29 H 0.083 0.917 30 H 0.342 0.658 31 H 0.038 0.962 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.646 -15.259 5.042 16.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.255 5.255 3 C 0.068 3.932 4 C -0.543 4.543 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.727 3.273 9 H -0.214 1.214 10 H -0.202 1.202 11 H -0.203 1.203 12 C -0.067 4.067 13 C 0.040 3.960 14 H 0.083 0.917 15 C -0.106 4.106 16 N -0.321 5.321 17 C -0.111 4.111 18 C -0.018 4.018 19 O -0.275 6.275 20 H 0.092 0.908 21 H 0.063 0.937 22 H 0.028 0.972 23 H 0.048 0.952 24 H 0.008 0.992 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.102 0.898 30 H 0.159 0.841 31 H 0.056 0.944 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.867 -15.065 4.181 15.746 hybrid contribution 0.351 0.665 0.508 0.908 sum -1.516 -14.401 4.689 15.220 Atomic orbital electron populations 1.22260 0.89149 0.99048 1.00761 1.62031 1.06623 1.17544 1.39347 1.19743 0.95402 0.81460 0.96587 1.21140 1.34635 0.96815 1.01689 0.91882 1.24992 0.95366 0.97349 0.96992 1.69955 1.38536 1.11477 1.34136 0.86547 0.78647 0.78250 0.83873 1.21411 1.20156 1.20318 1.22012 1.00992 0.90581 0.93134 1.22242 0.96582 0.93165 0.83974 0.91732 1.22653 0.99803 0.88504 0.99663 1.60537 1.61335 1.03597 1.06582 1.22645 0.96526 0.99610 0.92295 1.22594 1.00572 0.82494 0.96136 1.88203 1.71072 1.22136 1.46059 0.90819 0.93697 0.97163 0.95235 0.99246 0.92951 0.90713 0.94497 0.94119 0.89848 0.84074 0.94365 0.90089 0.88815 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 9.17 60.06 0.55 1.30 16 2 N -0.53 -12.18 4.70 -244.36 -1.15 -13.33 16 3 C 0.19 5.24 4.72 -4.98 -0.02 5.21 16 4 C -0.50 -14.65 8.51 -34.44 -0.29 -14.95 16 5 H 0.06 1.82 7.10 -52.49 -0.37 1.45 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 8 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 9 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.06 1.18 4.63 -3.82 -0.02 1.16 16 13 C 0.10 1.61 2.76 -26.68 -0.07 1.54 16 14 H 0.06 1.08 6.26 -51.93 -0.33 0.75 16 15 C 0.02 0.31 6.05 -3.71 -0.02 0.29 16 16 N -0.69 -7.91 6.92 -113.50 -0.79 -8.69 16 17 C 0.02 0.21 6.76 -3.71 -0.03 0.18 16 18 C 0.06 0.79 7.01 37.21 0.26 1.05 16 19 O -0.36 -6.32 10.42 -35.23 -0.37 -6.69 16 20 H 0.07 1.60 6.86 -51.93 -0.36 1.25 16 21 H 0.04 0.80 6.21 -51.93 -0.32 0.48 16 22 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 23 H 0.03 0.85 7.93 -51.92 -0.41 0.44 16 24 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 25 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.07 1.46 7.93 -51.93 -0.41 1.05 16 27 H 0.04 0.66 8.12 -51.93 -0.42 0.23 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.34 3.08 8.90 -39.29 -0.35 2.74 16 31 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 274.01 15.07 4.13 4.13 Total: -1.00 -31.86 274.01 -7.69 -39.55 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -5.49 Total: -2.73 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 0.26 Total: -2.74 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: -1.20 Total: -48.64 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.37 Total: -6.69 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.86 -7.69 -39.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126637125.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.727 kcal (2) G-P(sol) polarization free energy of solvation -31.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds