Wall clock time and date at job start Mon Mar 30 2020 03:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86804 * 119.99973 * 2 1 4 4 H 1.48510 * 109.46921 * 270.00094 * 3 2 1 5 5 H 1.48494 * 109.47174 * 30.00031 * 3 2 1 6 6 H 1.48498 * 109.47010 * 150.00246 * 3 2 1 7 7 C 1.39888 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99865 * 163.63621 * 7 2 1 9 9 C 1.41257 * 119.99779 * 343.64597 * 7 2 1 10 10 C 1.40700 * 120.19314 * 334.05735 * 9 7 2 11 11 C 1.38040 * 119.72451 * 179.70433 * 10 9 7 12 12 N 1.39841 * 119.94394 * 180.29832 * 11 10 9 13 13 C 1.39692 * 120.11752 * 0.55355 * 11 10 9 14 14 F 1.35093 * 119.80518 * 179.72188 * 13 11 10 15 15 C 1.38670 * 120.38912 * 359.44500 * 13 11 10 16 16 C 1.37787 * 120.27310 * 0.27666 * 15 13 11 17 17 Cl 1.73599 * 120.05851 * 180.02562 * 16 15 13 18 18 H 0.97004 * 119.99777 * 5.03811 * 1 2 3 19 19 H 1.08004 * 120.13677 * 359.96222 * 10 9 7 20 20 H 0.97004 * 120.00589 * 180.25914 * 12 11 10 21 21 H 0.97001 * 119.99744 * 0.25595 * 12 11 10 22 22 H 1.07997 * 119.86442 * 180.25297 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4903 2.0465 -1.4002 5 1 1.4403 2.6527 0.7000 6 1 3.5404 1.4402 0.7000 7 6 2.0083 -1.2115 0.0005 8 1 3.0554 -1.2305 -0.2630 9 6 1.3448 -2.4099 0.3455 10 6 0.2143 -2.3771 1.1825 11 6 -0.4303 -3.5534 1.5085 12 7 -1.5580 -3.5256 2.3350 13 6 0.0451 -4.7722 1.0187 14 9 -0.5872 -5.9202 1.3463 15 6 1.1589 -4.8101 0.1935 16 6 1.8112 -3.6452 -0.1468 17 17 3.2047 -3.6990 -1.1809 18 1 -0.4850 0.8369 -0.0738 19 1 -0.1502 -1.4351 1.5649 20 1 -2.0094 -4.3521 2.5677 21 1 -1.8889 -2.6798 2.6756 22 1 1.5167 -5.7567 -0.1838 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000142762222.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:21 Heat of formation + Delta-G solvation = -62.556371 kcal Electronic energy + Delta-G solvation = -11977.886687 eV Core-core repulsion = 9471.580549 eV Total energy + Delta-G solvation = -2506.306138 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 215.021 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.28418 -39.47955 -36.91862 -35.88033 -34.56699 -31.35571 -29.12259 -26.93491 -23.43507 -22.36551 -19.43828 -18.16129 -17.97238 -17.05544 -16.52627 -16.13275 -15.72370 -15.14124 -14.51021 -14.10704 -13.90589 -13.61594 -12.94609 -12.79228 -12.55726 -12.34177 -11.91751 -11.87171 -11.21902 -11.16762 -10.62458 -9.36927 -8.70971 -8.12742 -6.40289 0.79118 0.92827 1.43116 1.50380 1.57569 1.85139 2.21780 2.63866 3.19572 3.54136 3.93357 4.28292 4.91290 4.92150 5.20241 5.28037 5.47426 5.72602 5.93790 6.04530 6.39658 6.74184 6.82917 6.90212 7.16757 8.27449 Molecular weight = 215.02amu Principal moments of inertia in cm(-1) A = 0.029451 B = 0.012788 C = 0.009136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.495141 B = 2189.085522 C = 3063.959341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.040 3.960 3 Si 0.980 3.020 4 H -0.263 1.263 5 H -0.265 1.265 6 H -0.258 1.258 7 C -0.466 4.466 8 H 0.088 0.912 9 C 0.118 3.882 10 C -0.235 4.235 11 C 0.209 3.791 12 N -0.871 5.871 13 C -0.115 4.115 14 F -0.164 7.164 15 C -0.072 4.072 16 C -0.169 4.169 17 Cl -0.098 7.098 18 H 0.292 0.708 19 H 0.125 0.875 20 H 0.399 0.601 21 H 0.403 0.597 22 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.117 -0.369 1.944 1.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.177 4.177 3 Si 0.801 3.199 4 H -0.188 1.188 5 H -0.189 1.189 6 H -0.182 1.182 7 C -0.494 4.494 8 H 0.106 0.894 9 C 0.114 3.886 10 C -0.260 4.260 11 C 0.104 3.896 12 N -0.412 5.412 13 C -0.139 4.139 14 F -0.143 7.143 15 C -0.092 4.092 16 C -0.198 4.198 17 Cl -0.070 7.070 18 H 0.103 0.897 19 H 0.142 0.858 20 H 0.228 0.772 21 H 0.232 0.768 22 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.196 -0.271 1.887 1.916 hybrid contribution -0.090 0.326 0.000 0.338 sum -0.286 0.055 1.887 1.909 Atomic orbital electron populations 1.69857 1.08874 1.31052 1.33389 1.26753 0.95514 1.04362 0.91073 0.85209 0.79234 0.75888 0.79574 1.18800 1.18919 1.18202 1.19875 0.98415 0.91326 1.39825 0.89447 1.17509 0.91093 0.91591 0.88441 1.20487 1.02407 0.95367 1.07722 1.17706 0.88566 0.92218 0.91153 1.42137 1.30970 1.11620 1.56505 1.16640 1.01799 0.80285 1.15133 1.91251 1.82111 1.48252 1.92713 1.20324 0.94198 0.97493 0.97223 1.20472 0.97202 0.94556 1.07573 1.98188 1.42611 1.98717 1.67467 0.89707 0.85773 0.77210 0.76760 0.85261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.93 10.96 21.82 0.24 -38.69 14 2 C 0.04 1.90 5.16 85.23 0.44 2.34 14 3 Si 0.98 35.87 29.59 68.60 2.03 37.90 14 4 H -0.26 -9.40 7.11 99.48 0.71 -8.69 14 5 H -0.26 -9.16 7.11 99.48 0.71 -8.45 14 6 H -0.26 -9.39 7.11 99.48 0.71 -8.68 14 7 C -0.47 -23.60 8.50 23.41 0.20 -23.40 14 8 H 0.09 4.34 7.12 -2.91 -0.02 4.32 14 9 C 0.12 6.07 5.56 -21.28 -0.12 5.96 14 10 C -0.23 -11.57 8.51 22.82 0.19 -11.38 14 11 C 0.21 9.33 6.75 38.17 0.26 9.59 14 12 N -0.87 -30.78 9.09 -51.31 -0.47 -31.24 14 13 C -0.11 -5.19 7.33 22.72 0.17 -5.03 14 14 F -0.16 -6.88 16.62 44.97 0.75 -6.13 14 15 C -0.07 -3.26 9.77 22.27 0.22 -3.05 14 16 C -0.17 -8.14 6.37 22.82 0.15 -7.99 14 17 Cl -0.10 -4.20 27.59 -2.72 -0.08 -4.27 14 18 H 0.29 12.65 8.30 -92.70 -0.77 11.88 14 19 H 0.12 6.23 6.21 -2.91 -0.02 6.21 14 20 H 0.40 12.42 8.31 -92.71 -0.77 11.65 14 21 H 0.40 12.66 8.84 -92.71 -0.82 11.84 14 22 H 0.13 5.20 8.06 -2.91 -0.02 5.18 14 Total: -1.00 -53.83 219.97 3.68 -50.15 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: -0.30 Total: 25.25 kcal Atomic # 6 Polarization: -34.46 SS G_CDS: 1.50 Total: -32.96 kcal Atomic # 7 Polarization: -69.71 SS G_CDS: -0.23 Total: -69.93 kcal Atomic # 9 Polarization: -6.88 SS G_CDS: 0.75 Total: -6.13 kcal Atomic # 14 Polarization: 35.87 SS G_CDS: 2.03 Total: 37.90 kcal Atomic # 17 Polarization: -4.20 SS G_CDS: -0.08 Total: -4.27 kcal Total: -53.83 3.68 -50.15 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142762222.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.406 kcal (2) G-P(sol) polarization free energy of solvation -53.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds