Wall clock time and date at job start Mon Mar 30 2020 03:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.32793 * 115.70866 * 269.74479 * 10 9 7 12 12 O 1.21226 * 118.13265 * 358.97250 * 11 10 9 13 13 C 1.50597 * 123.73001 * 178.70569 * 11 10 9 14 14 S 1.82039 * 108.29968 * 30.52493 * 13 11 10 15 15 C 1.82038 * 101.20644 * 309.37973 * 14 13 11 16 16 C 1.32793 * 115.71366 * 89.99846 * 10 9 7 17 17 O 1.21225 * 118.12806 * 1.02433 * 16 10 9 18 18 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 20 20 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 21 21 H 1.08997 * 109.88674 * 270.74032 * 13 11 10 22 22 H 1.09000 * 109.60656 * 150.14769 * 13 11 10 23 23 H 1.09003 * 109.67749 * 290.70711 * 15 14 13 24 24 H 1.09000 * 109.71037 * 170.18186 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 2.5732 -4.0487 -1.2086 12 8 2.0907 -3.5160 -2.1849 13 6 3.5629 -5.1632 -1.4239 14 16 3.4370 -6.3180 -0.0224 15 6 3.5626 -5.1759 1.3895 16 6 2.5771 -4.0559 1.1843 17 8 2.0979 -3.5291 2.1653 18 1 -0.4850 0.8401 -0.0004 19 1 0.6242 -2.5609 0.8844 20 1 0.6244 -2.5529 -0.8956 21 1 4.5731 -4.7572 -1.4753 22 1 3.3296 -5.6854 -2.3518 23 1 4.5729 -4.7703 1.4448 24 1 3.3290 -5.7058 2.3130 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156945170.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:01 Heat of formation + Delta-G solvation = -78.112475 kcal Electronic energy + Delta-G solvation = -12597.298299 eV Core-core repulsion = 10215.821609 eV Total energy + Delta-G solvation = -2381.476690 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 215.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.52317 -40.00746 -36.35500 -34.99334 -32.47379 -30.67568 -28.99150 -24.99910 -24.76523 -20.17589 -19.06854 -18.75525 -18.32863 -17.46863 -16.81490 -16.39442 -16.03311 -15.69590 -15.25385 -14.68307 -14.13978 -13.79540 -13.53291 -13.19898 -13.00391 -12.67468 -12.58154 -12.15091 -11.94070 -11.25154 -11.04025 -10.70616 -10.59400 -8.93442 -8.33383 -6.46876 0.20292 0.32295 1.10212 1.33044 1.35641 1.46899 1.66414 1.96386 2.33757 2.67328 3.00942 3.52323 4.02154 4.05027 4.31144 4.42679 4.49637 4.93914 5.03732 5.54580 5.85267 6.02424 6.54937 6.68680 6.71851 7.21449 8.77970 Molecular weight = 215.04amu Principal moments of inertia in cm(-1) A = 0.045779 B = 0.009916 C = 0.009172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.492432 B = 2823.141187 C = 3052.080468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.976 3.024 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.231 3.769 10 N -0.559 5.559 11 C 0.513 3.487 12 O -0.528 6.528 13 C -0.099 4.099 14 S -0.185 6.185 15 C -0.099 4.099 16 C 0.513 3.487 17 O -0.528 6.528 18 H 0.270 0.730 19 H 0.026 0.974 20 H 0.026 0.974 21 H 0.161 0.839 22 H 0.170 0.830 23 H 0.160 0.840 24 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.783 -11.932 -0.056 16.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.193 4.193 3 Si 0.800 3.200 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.073 0.927 9 C 0.111 3.889 10 N -0.298 5.298 11 C 0.302 3.698 12 O -0.404 6.404 13 C -0.249 4.249 14 S 0.041 5.959 15 C -0.249 4.249 16 C 0.302 3.698 17 O -0.403 6.403 18 H 0.078 0.922 19 H 0.044 0.956 20 H 0.044 0.956 21 H 0.178 0.822 22 H 0.187 0.813 23 H 0.178 0.822 24 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 10.046 -12.472 -0.059 16.015 hybrid contribution -0.092 2.335 0.004 2.336 sum 9.954 -10.138 -0.055 14.208 Atomic orbital electron populations 1.70066 1.07720 1.28410 1.50272 1.25923 0.95949 1.03399 0.93994 0.85237 0.78709 0.77938 0.78140 1.18745 1.19826 1.19828 1.21411 0.92991 0.91311 1.52422 0.92677 1.19166 0.88883 0.83511 0.97321 1.46036 1.42860 1.33523 1.07394 1.21097 0.82611 0.84186 0.81916 1.90749 1.53193 1.57030 1.39392 1.23972 1.02517 0.95128 1.03315 1.87271 1.96955 1.12974 0.98708 1.23969 1.02582 0.95145 1.03235 1.21095 0.82544 0.84220 0.81955 1.90749 1.53215 1.57441 1.38940 0.92157 0.95593 0.95573 0.82167 0.81280 0.82203 0.81259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.49 13.29 21.45 0.28 -57.21 14 2 C 0.01 0.40 5.46 84.66 0.46 0.87 14 3 Si 0.98 45.57 29.54 68.60 2.03 47.59 14 4 H -0.26 -11.74 7.11 99.48 0.71 -11.03 14 5 H -0.27 -12.29 7.11 99.48 0.71 -11.59 14 6 H -0.27 -12.29 7.11 99.48 0.71 -11.59 14 7 C -0.54 -32.21 9.32 25.60 0.24 -31.97 14 8 H 0.05 3.18 7.81 -2.91 -0.02 3.15 14 9 C 0.23 13.09 4.41 85.64 0.38 13.47 14 10 N -0.56 -24.31 2.47 -765.61 -1.89 -26.20 14 11 C 0.51 19.42 7.35 87.93 0.65 20.07 14 12 O -0.53 -24.84 15.92 -2.86 -0.05 -24.88 14 13 C -0.10 -2.19 6.67 71.20 0.48 -1.72 14 14 S -0.19 -3.77 22.45 -56.49 -1.27 -5.04 14 15 C -0.10 -2.19 6.67 71.20 0.47 -1.72 14 16 C 0.51 19.42 7.35 87.93 0.65 20.06 14 17 O -0.53 -24.83 15.92 -2.86 -0.05 -24.87 14 18 H 0.27 15.54 8.31 -92.70 -0.77 14.76 14 19 H 0.03 1.61 6.96 -2.38 -0.02 1.59 14 20 H 0.03 1.62 6.95 -2.39 -0.02 1.61 14 21 H 0.16 2.55 8.14 -2.39 -0.02 2.53 14 22 H 0.17 3.00 8.14 -2.39 -0.02 2.99 14 23 H 0.16 2.54 8.14 -2.39 -0.02 2.53 14 24 H 0.17 3.01 8.14 -2.39 -0.02 2.99 14 Total: -1.00 -77.21 230.74 3.60 -73.61 By element: Atomic # 1 Polarization: -3.27 SS G_CDS: 1.22 Total: -2.06 kcal Atomic # 6 Polarization: 15.74 SS G_CDS: 3.32 Total: 19.06 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -1.61 Total: -83.41 kcal Atomic # 8 Polarization: -49.66 SS G_CDS: -0.09 Total: -49.76 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Atomic # 16 Polarization: -3.77 SS G_CDS: -1.27 Total: -5.04 kcal Total: -77.21 3.60 -73.61 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156945170.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.501 kcal (2) G-P(sol) polarization free energy of solvation -77.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds