Wall clock time and date at job start Mon Mar 30 2020 03:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00186 * 2 1 4 4 H 1.09007 * 109.44531 * 29.97186 * 3 2 1 5 5 C 1.53031 * 109.46394 * 270.00572 * 3 2 1 6 6 C 1.53197 * 109.31578 * 178.61475 * 5 3 2 7 7 N 1.46922 * 108.77423 * 54.63091 * 6 5 3 8 8 C 1.36939 * 120.63074 * 126.42037 * 7 6 5 9 9 H 1.08000 * 119.99645 * 217.27663 * 8 7 6 10 10 C 1.38809 * 119.99946 * 37.27158 * 8 7 6 11 11 N 1.31619 * 119.99697 * 216.29199 * 10 8 7 12 12 Si 1.86801 * 120.00114 * 36.29525 * 10 8 7 13 13 H 1.48499 * 109.47080 * 84.70396 * 12 10 8 14 14 H 1.48494 * 109.47065 * 204.70524 * 12 10 8 15 15 H 1.48503 * 109.46906 * 324.70563 * 12 10 8 16 16 C 1.46930 * 118.73962 * 306.39265 * 7 6 5 17 17 H 1.09000 * 109.58635 * 293.67923 * 16 7 6 18 18 C 1.53004 * 109.58594 * 173.39528 * 16 7 6 19 19 N 1.46903 * 109.46694 * 60.16868 * 18 16 7 20 20 C 1.53043 * 109.46059 * 149.93008 * 3 2 1 21 21 H 1.09001 * 109.47264 * 59.99340 * 1 2 3 22 22 H 1.08995 * 109.47041 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46790 * 299.99850 * 1 2 3 24 24 H 1.09000 * 109.49916 * 298.56214 * 5 3 2 25 25 H 1.09000 * 109.49829 * 58.66505 * 5 3 2 26 26 H 1.08993 * 109.58820 * 174.42168 * 6 5 3 27 27 H 1.09003 * 109.58408 * 294.70645 * 6 5 3 28 28 H 0.96999 * 119.99855 * 180.02562 * 11 10 8 29 29 H 1.08997 * 109.46894 * 180.16484 * 18 16 7 30 30 H 1.09000 * 109.46934 * 300.16763 * 18 16 7 31 31 H 1.00897 * 111.00428 * 56.04390 * 19 18 16 32 32 H 1.00900 * 110.99418 * 180.02562 * 19 18 16 33 33 H 1.09000 * 109.50050 * 301.34396 * 20 3 2 34 34 H 1.09005 * 109.49334 * 61.43986 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3445 1.9991 0.5135 5 6 2.2176 1.7713 -1.4429 6 6 2.8086 3.1847 -1.4390 7 7 4.0308 3.1839 -0.6237 8 6 5.2112 3.6530 -1.1354 9 1 6.1414 3.1669 -0.8803 10 6 5.2123 4.7531 -1.9819 11 7 6.0589 4.8083 -2.9881 12 14 4.0122 6.1551 -1.6929 13 1 4.5804 7.0949 -0.6932 14 1 3.7750 6.8748 -2.9699 15 1 2.7273 5.6102 -1.1856 16 6 3.9624 2.6708 0.7514 17 1 3.3362 3.3273 1.3557 18 6 5.3702 2.6129 1.3480 19 7 5.9518 3.9618 1.3620 20 6 3.3585 1.2633 0.7230 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 2.9029 1.0919 -1.9497 25 1 1.2602 1.7788 -1.9638 26 1 3.0502 3.4825 -2.4593 27 1 2.0854 3.8820 -1.0163 28 1 6.0599 5.5772 -3.5795 29 1 5.3175 2.2294 2.3668 30 1 5.9941 1.9545 0.7436 31 1 5.3582 4.6064 1.8622 32 1 6.8826 3.9502 1.7514 33 1 3.2132 0.9090 1.7436 34 1 4.0330 0.5885 0.1958 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159320152.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:38 Heat of formation + Delta-G solvation = -13.744161 kcal Electronic energy + Delta-G solvation = -15499.006358 eV Core-core repulsion = 13046.952867 eV Total energy + Delta-G solvation = -2452.053490 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.77730 -36.71193 -33.59153 -32.40015 -30.25567 -29.82734 -26.71447 -24.76049 -23.69912 -22.30737 -20.44644 -19.40830 -16.46704 -16.28993 -15.32980 -15.01794 -14.77238 -14.48249 -14.23206 -13.65845 -13.24849 -12.84031 -12.51013 -11.98602 -11.94537 -11.69319 -11.41373 -11.23388 -10.73534 -10.45358 -10.43669 -10.22772 -9.90868 -9.80774 -9.35376 -9.06137 -8.15627 -7.63800 -6.57474 -5.78665 -3.00335 3.57099 3.66386 3.71354 4.02522 4.79599 4.97435 5.21633 5.32020 5.42606 5.47742 5.51799 5.55379 5.67619 5.71769 5.84123 6.03961 6.07003 6.15119 6.26747 6.33896 6.47185 6.48912 6.55079 6.88908 6.91585 7.11458 7.52231 7.95733 8.21623 8.26230 8.64160 9.24989 9.98870 10.37718 11.37692 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.031817 B = 0.011682 C = 0.009724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.825097 B = 2396.282286 C = 2878.807946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.392 6.392 3 C 0.097 3.903 4 H 0.050 0.950 5 C -0.155 4.155 6 C 0.147 3.853 7 N -0.589 5.589 8 C -0.211 4.211 9 H 0.087 0.913 10 C 0.040 3.960 11 N -0.894 5.894 12 Si 0.833 3.167 13 H -0.294 1.294 14 H -0.305 1.305 15 H -0.268 1.268 16 C 0.170 3.830 17 H 0.022 0.978 18 C 0.082 3.918 19 N -0.811 5.811 20 C -0.123 4.123 21 H 0.038 0.962 22 H 0.079 0.921 23 H 0.035 0.965 24 H 0.071 0.929 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.021 0.979 28 H 0.257 0.743 29 H 0.007 0.993 30 H 0.074 0.926 31 H 0.327 0.673 32 H 0.325 0.675 33 H 0.056 0.944 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.022 -6.141 8.095 12.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.311 6.311 3 C 0.040 3.960 4 H 0.068 0.932 5 C -0.195 4.195 6 C 0.021 3.979 7 N -0.313 5.313 8 C -0.339 4.339 9 H 0.104 0.896 10 C -0.159 4.159 11 N -0.536 5.536 12 Si 0.662 3.338 13 H -0.222 1.222 14 H -0.233 1.233 15 H -0.194 1.194 16 C 0.063 3.937 17 H 0.040 0.960 18 C -0.049 4.049 19 N -0.339 5.339 20 C -0.163 4.163 21 H 0.057 0.943 22 H 0.097 0.903 23 H 0.054 0.946 24 H 0.090 0.910 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.039 0.961 28 H 0.067 0.933 29 H 0.025 0.975 30 H 0.092 0.908 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.074 0.926 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.877 -6.258 7.157 12.346 hybrid contribution -0.984 1.218 1.214 1.982 sum -8.860 -5.040 8.371 13.190 Atomic orbital electron populations 1.22683 0.82170 1.01897 0.99601 1.87900 1.18772 1.29270 1.95153 1.22098 0.94453 0.83011 0.96456 0.93182 1.22591 1.00338 1.00647 0.95900 1.21249 0.88207 0.91959 0.96479 1.44472 1.07454 1.72224 1.07141 1.18549 0.85708 1.07714 1.21964 0.89586 1.25391 0.95691 0.97679 0.97140 1.70083 1.40255 1.29691 1.13596 0.87533 0.82977 0.86480 0.76852 1.22219 1.23300 1.19373 1.20565 0.93853 0.91274 0.88051 0.96035 1.21648 0.95960 0.91353 0.95935 1.58597 1.05027 1.07704 1.62587 1.22095 0.95388 0.99731 0.99058 0.94332 0.90292 0.94619 0.90993 0.93130 0.91017 0.96119 0.93348 0.97479 0.90800 0.86141 0.86268 0.92567 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.82 101.05 1.09 1.50 16 2 O -0.39 -6.41 10.35 -35.23 -0.36 -6.78 16 3 C 0.10 1.66 2.57 -26.69 -0.07 1.60 16 4 H 0.05 0.83 7.78 -51.93 -0.40 0.42 16 5 C -0.16 -2.90 5.69 -26.61 -0.15 -3.05 16 6 C 0.15 3.23 4.54 -3.71 -0.02 3.22 16 7 N -0.59 -13.70 2.55 -164.77 -0.42 -14.12 16 8 C -0.21 -5.70 7.48 -15.06 -0.11 -5.82 16 9 H 0.09 2.51 6.40 -52.49 -0.34 2.17 16 10 C 0.04 1.14 4.77 -17.43 -0.08 1.06 16 11 N -0.89 -27.47 13.97 55.49 0.78 -26.69 16 12 Si 0.83 21.88 27.24 -169.99 -4.63 17.25 16 13 H -0.29 -7.92 7.11 56.52 0.40 -7.52 16 14 H -0.31 -8.24 7.11 56.52 0.40 -7.84 16 15 H -0.27 -6.74 5.15 56.52 0.29 -6.45 16 16 C 0.17 3.30 3.13 -67.60 -0.21 3.08 16 17 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 18 C 0.08 1.48 5.55 -3.82 -0.02 1.46 16 19 N -0.81 -15.17 7.38 -10.37 -0.08 -15.24 16 20 C -0.12 -2.14 5.02 -26.61 -0.13 -2.27 16 21 H 0.04 0.46 7.85 -51.93 -0.41 0.05 16 22 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 23 H 0.04 0.40 8.08 -51.93 -0.42 -0.02 16 24 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 25 H 0.05 0.84 7.85 -51.93 -0.41 0.44 16 26 H 0.07 1.72 6.74 -51.93 -0.35 1.37 16 27 H 0.02 0.46 6.69 -51.93 -0.35 0.11 16 28 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 29 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 30 H 0.07 1.44 7.41 -51.93 -0.38 1.06 16 31 H 0.33 5.77 8.99 -39.29 -0.35 5.41 16 32 H 0.33 5.26 9.08 -39.29 -0.36 4.90 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 264.44 15.07 3.99 3.99 Total: -1.00 -30.99 264.44 -5.98 -36.98 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -5.55 Total: 3.84 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 0.29 Total: 0.78 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: 0.28 Total: -56.05 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -0.36 Total: -6.78 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.63 Total: 17.25 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.99 -5.98 -36.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159320152.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.232 kcal (2) G-P(sol) polarization free energy of solvation -30.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds