Wall clock time and date at job start Mon Mar 30 2020 03:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31208 * 1 3 3 Si 1.86797 * 119.99844 * 2 1 4 4 H 1.48500 * 109.47040 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47268 * 300.00343 * 3 2 1 6 6 H 1.48498 * 109.47373 * 60.00189 * 3 2 1 7 7 C 1.39130 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00292 * 197.76868 * 7 2 1 9 9 N 1.37120 * 120.00026 * 17.76901 * 7 2 1 10 10 C 1.35951 * 120.06590 * 28.26035 * 9 7 2 11 11 N 1.30507 * 121.47344 * 179.97438 * 10 9 7 12 12 C 1.33679 * 121.55144 * 359.72793 * 11 10 9 13 13 Cl 1.73600 * 120.02654 * 180.27356 * 12 11 10 14 14 C 1.36846 * 119.94766 * 0.52594 * 12 11 10 15 15 N 1.40224 * 120.69295 * 179.76606 * 14 12 11 16 16 C 1.35035 * 120.06439 * 208.23567 * 9 7 2 17 17 O 1.22003 * 120.72657 * 0.04273 * 16 9 7 18 18 H 0.97001 * 120.00223 * 359.97438 * 1 2 3 19 19 H 1.07999 * 119.26474 * 359.95376 * 10 9 7 20 20 H 0.97002 * 119.99621 * 179.72510 * 15 14 12 21 21 H 0.96998 * 120.00090 * 359.44795 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3121 0.0000 0.0000 3 14 2.2460 1.6177 0.0000 4 1 3.7060 1.3464 -0.0006 5 1 1.8872 2.3965 -1.2125 6 1 1.8873 2.3964 1.2125 7 6 2.0077 -1.2049 -0.0005 8 1 3.0491 -1.2274 0.2849 9 7 1.3712 -2.3639 -0.3635 10 6 0.3262 -2.3238 -1.2321 11 7 -0.2990 -3.4099 -1.5965 12 6 0.0620 -4.6123 -1.1374 13 17 -0.7930 -6.0320 -1.6540 14 6 1.1027 -4.7226 -0.2557 15 7 1.4914 -5.9756 0.2396 16 6 1.7815 -3.5475 0.1409 17 8 2.7173 -3.6016 0.9217 18 1 -0.4850 0.8400 0.0004 19 1 0.0060 -1.3719 -1.6292 20 1 2.2332 -6.0425 0.8611 21 1 1.0160 -6.7748 -0.0361 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166262648.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:13 Heat of formation + Delta-G solvation = -5.299440 kcal Electronic energy + Delta-G solvation = -12261.680843 eV Core-core repulsion = 9777.777513 eV Total energy + Delta-G solvation = -2483.903330 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 215.020 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.49954 -36.49941 -36.14545 -34.98584 -33.28842 -31.73881 -27.91116 -26.18389 -22.99132 -22.33153 -18.75657 -17.99145 -16.32023 -15.79311 -15.44631 -14.86850 -14.67218 -14.12797 -13.18407 -12.81230 -12.44358 -12.19711 -11.57747 -11.42609 -10.94646 -10.67104 -10.61537 -10.33417 -9.63489 -9.11403 -8.98585 -8.64692 -7.11519 -6.41221 -4.68173 1.83974 2.64886 2.89223 2.93572 2.97122 3.04796 3.64901 4.20593 4.25346 4.70564 4.99509 5.45915 6.08256 6.12682 6.73691 6.93207 7.29601 7.86320 7.99431 8.25434 8.43321 8.54271 9.07204 9.27874 9.95729 Molecular weight = 215.02amu Principal moments of inertia in cm(-1) A = 0.052692 B = 0.010131 C = 0.008715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.265213 B = 2763.225041 C = 3211.896158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.048 3.952 3 Si 0.946 3.054 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.333 4.333 8 H 0.122 0.878 9 N -0.321 5.321 10 C 0.324 3.676 11 N -0.533 5.533 12 C 0.102 3.898 13 Cl -0.068 7.068 14 C 0.038 3.962 15 N -0.861 5.861 16 C 0.463 3.537 17 O -0.578 6.578 18 H 0.290 0.710 19 H 0.205 0.795 20 H 0.399 0.601 21 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.379 -2.715 -2.619 3.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.163 4.163 3 Si 0.769 3.231 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.462 4.462 8 H 0.140 0.860 9 N -0.021 5.021 10 C 0.042 3.958 11 N -0.259 5.259 12 C -0.056 4.056 13 Cl -0.041 7.041 14 C -0.074 4.074 15 N -0.408 5.408 16 C 0.264 3.736 17 O -0.462 6.462 18 H 0.101 0.899 19 H 0.222 0.778 20 H 0.228 0.772 21 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -0.675 -2.707 -2.684 3.872 hybrid contribution 0.646 0.139 0.728 0.983 sum -0.029 -2.568 -1.956 3.229 Atomic orbital electron populations 1.69772 1.06629 1.30284 1.40002 1.25760 0.95663 1.01304 0.93601 0.85557 0.80136 0.78717 0.78711 1.18257 1.19355 1.19754 1.20246 0.97449 0.82033 1.46518 0.86034 1.42662 1.23232 1.08301 1.27905 1.24682 0.86342 0.96829 0.87974 1.67442 1.31540 0.96143 1.30747 1.20492 0.95756 0.88277 1.01085 1.98276 1.78003 1.37087 1.90690 1.18794 0.98871 0.88719 1.01017 1.41834 1.40338 1.03804 1.54781 1.16591 0.88368 0.83231 0.85441 1.90772 1.31392 1.85850 1.38233 0.89920 0.77848 0.77243 0.77712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -19.72 11.17 55.50 0.62 -19.10 14 2 C 0.05 1.12 5.00 -17.49 -0.09 1.03 14 3 Si 0.95 17.61 29.59 -169.99 -5.03 12.58 14 4 H -0.26 -4.84 7.11 56.52 0.40 -4.44 14 5 H -0.27 -4.80 7.11 56.52 0.40 -4.40 14 6 H -0.27 -5.07 7.11 56.52 0.40 -4.67 14 7 C -0.33 -8.45 9.14 -14.86 -0.14 -8.59 14 8 H 0.12 3.14 7.59 -52.49 -0.40 2.74 14 9 N -0.32 -8.22 2.75 -65.55 -0.18 -8.40 14 10 C 0.32 7.71 10.32 -89.53 -0.92 6.79 14 11 N -0.53 -12.34 10.38 -11.20 -0.12 -12.46 14 12 C 0.10 2.25 7.29 -17.25 -0.13 2.12 14 13 Cl -0.07 -1.23 27.77 -51.86 -1.44 -2.67 14 14 C 0.04 0.86 6.80 -83.32 -0.57 0.29 14 15 N -0.86 -16.08 9.06 32.62 0.30 -15.78 14 16 C 0.46 12.03 7.42 -14.95 -0.11 11.92 14 17 O -0.58 -16.09 16.36 4.92 0.08 -16.01 14 18 H 0.29 6.19 8.30 -40.82 -0.34 5.85 14 19 H 0.21 4.68 6.16 -52.49 -0.32 4.36 14 20 H 0.40 7.21 8.36 -40.82 -0.34 6.87 14 21 H 0.39 6.28 7.53 -40.82 -0.31 5.98 14 LS Contribution 212.31 15.07 3.20 3.20 Total: -1.00 -27.77 212.31 -5.03 -32.80 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -0.50 Total: 12.29 kcal Atomic # 6 Polarization: 15.51 SS G_CDS: -1.95 Total: 13.56 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: 0.62 Total: -55.74 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: 0.08 Total: -16.01 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -1.44 Total: -2.67 kcal Total LS contribution 3.20 Total: 3.20 kcal Total: -27.77 -5.03 -32.80 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166262648.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.500 kcal (2) G-P(sol) polarization free energy of solvation -27.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds