Wall clock time and date at job start Mon Mar 30 2020 03:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 N 1.46899 * 109.47394 * 239.99962 * 2 1 3 5 5 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 6 6 H 1.09003 * 109.50950 * 300.08674 * 5 2 1 7 7 C 1.53099 * 109.50774 * 179.97438 * 5 2 1 8 8 N 1.47016 * 109.26152 * 183.21599 * 7 5 2 9 9 C 1.46902 * 110.99892 * 182.39500 * 8 7 5 10 10 C 1.50699 * 109.46606 * 170.00099 * 9 8 7 11 11 H 1.08004 * 120.00548 * 0.02562 * 10 9 8 12 12 C 1.37883 * 119.99670 * 179.97438 * 10 9 8 13 13 N 1.31507 * 119.99917 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 119.99780 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46902 * 90.00228 * 14 12 10 16 16 H 1.48500 * 109.46932 * 210.00127 * 14 12 10 17 17 H 1.48499 * 109.47110 * 330.00000 * 14 12 10 18 18 C 1.47014 * 110.75011 * 58.61990 * 8 7 5 19 19 C 1.53098 * 109.25662 * 301.38503 * 18 8 7 20 20 O 1.43016 * 109.26231 * 56.85060 * 19 18 8 21 21 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 22 22 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 23 23 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 24 24 H 1.00893 * 111.00096 * 176.05209 * 4 2 1 25 25 H 1.00903 * 110.99833 * 299.99831 * 4 2 1 26 26 H 1.09002 * 109.51067 * 303.15742 * 7 5 2 27 27 H 1.09008 * 109.50236 * 63.28130 * 7 5 2 28 28 H 1.08998 * 109.46991 * 289.99923 * 9 8 7 29 29 H 1.08999 * 109.47021 * 50.00645 * 9 8 7 30 30 H 0.97007 * 120.00092 * 180.02562 * 13 12 10 31 31 H 1.09001 * 109.50819 * 61.31691 * 18 8 7 32 32 H 1.08996 * 109.50894 * 181.40967 * 18 8 7 33 33 H 1.09003 * 109.50802 * 176.78698 * 19 18 8 34 34 H 1.09004 * 109.50671 * 296.86683 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0198 -0.6925 -1.1994 5 6 2.0399 -0.7212 1.2493 6 1 1.6756 -0.2087 2.1397 7 6 3.5709 -0.7223 1.2499 8 7 4.0549 -1.4827 2.4113 9 6 5.5221 -1.4604 2.4808 10 6 5.9710 -2.0318 3.8011 11 1 5.2397 -2.3773 4.5167 12 6 7.3157 -2.1144 4.0950 13 7 8.2062 -1.6941 3.2234 14 14 7.8722 -2.8233 5.7312 15 1 8.0657 -4.2894 5.5953 16 1 9.1534 -2.1902 6.1348 17 1 6.8400 -2.5538 6.7642 18 6 3.5500 -2.8630 2.3773 19 6 2.0192 -2.8405 2.3654 20 8 1.5673 -2.0711 1.2477 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.0262 -0.6501 -1.2558 25 1 1.6963 -1.6480 -1.2227 26 1 3.9350 -1.1867 0.3334 27 1 3.9356 0.3033 1.3086 28 1 5.9335 -2.0581 1.6675 29 1 5.8745 -0.4329 2.3910 30 1 9.1522 -1.7525 3.4300 31 1 3.9136 -3.3616 1.4788 32 1 3.8998 -3.4003 3.2587 33 1 1.6408 -3.8594 2.2827 34 1 1.6546 -2.3908 3.2890 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169182801.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:14 Heat of formation + Delta-G solvation = -71.971614 kcal Electronic energy + Delta-G solvation = -15059.635419 eV Core-core repulsion = 12605.056997 eV Total energy + Delta-G solvation = -2454.578422 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.82141 -37.30330 -36.27990 -34.60279 -31.36697 -30.12120 -29.86746 -27.17403 -24.92550 -24.07262 -21.78168 -21.04089 -18.61333 -17.53365 -17.37546 -16.53434 -16.42034 -16.15798 -15.77037 -15.63645 -14.92366 -14.57451 -14.17201 -14.10926 -13.27531 -12.89676 -12.83388 -12.71072 -12.63568 -12.47293 -12.27341 -12.12333 -11.96992 -11.48409 -11.42835 -10.68401 -10.52472 -9.66771 -9.17314 -8.26246 -6.37507 1.38892 1.40383 1.52118 2.36085 2.71370 3.04467 3.10264 3.66609 3.85580 3.96333 4.11928 4.14890 4.24906 4.38253 4.46010 4.59530 4.63737 4.79817 4.88861 4.90298 5.04091 5.09968 5.15287 5.18250 5.39611 5.56863 5.94717 6.08157 6.16128 6.25429 6.46377 6.52767 6.77361 7.32755 8.85169 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.057387 B = 0.007004 C = 0.006567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.794604 B = 3996.999677 C = 4262.544685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.100 3.900 3 H 0.098 0.902 4 N -0.839 5.839 5 C 0.067 3.933 6 H 0.065 0.935 7 C 0.022 3.978 8 N -0.541 5.541 9 C 0.208 3.792 10 C -0.527 4.527 11 H 0.064 0.936 12 C 0.002 3.998 13 N -0.935 5.935 14 Si 0.973 3.027 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.264 1.264 18 C 0.028 3.972 19 C 0.074 3.926 20 O -0.384 6.384 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.054 0.946 24 H 0.338 0.662 25 H 0.345 0.655 26 H 0.025 0.975 27 H 0.074 0.926 28 H -0.040 1.040 29 H 0.004 0.996 30 H 0.266 0.734 31 H 0.016 0.984 32 H 0.078 0.922 33 H 0.120 0.880 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.393 0.399 -3.662 13.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.013 4.013 3 H 0.116 0.884 4 N -0.368 5.368 5 C 0.007 3.993 6 H 0.083 0.917 7 C -0.106 4.106 8 N -0.266 5.266 9 C 0.082 3.918 10 C -0.566 4.566 11 H 0.083 0.917 12 C -0.196 4.196 13 N -0.575 5.575 14 Si 0.797 3.203 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.188 1.188 18 C -0.101 4.101 19 C -0.003 4.003 20 O -0.303 6.303 21 H 0.086 0.914 22 H 0.086 0.914 23 H 0.073 0.927 24 H 0.151 0.849 25 H 0.158 0.842 26 H 0.043 0.957 27 H 0.092 0.908 28 H -0.022 1.022 29 H 0.022 0.978 30 H 0.075 0.925 31 H 0.035 0.965 32 H 0.096 0.904 33 H 0.138 0.862 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.938 1.125 -3.829 14.499 hybrid contribution 2.069 -1.188 0.842 2.530 sum -11.869 -0.062 -2.987 12.240 Atomic orbital electron populations 1.21655 0.92598 1.02380 1.02366 1.21578 0.97183 0.97323 0.85206 0.88399 1.59048 1.16177 1.22075 1.39550 1.23068 0.91005 0.84127 1.01097 0.91702 1.22811 0.96912 0.99060 0.91851 1.62278 1.11507 1.13219 1.39598 1.19387 0.82392 0.94732 0.95269 1.21430 0.92031 1.40941 1.02158 0.91746 1.25956 0.96677 0.95782 1.01226 1.70084 1.01802 1.48218 1.37365 0.85332 0.77712 0.78438 0.78839 1.19684 1.20670 1.18781 1.22669 0.96757 0.90079 1.00550 1.22725 0.91165 0.97089 0.89332 1.87834 1.72566 1.23022 1.46887 0.91428 0.91361 0.92654 0.84931 0.84219 0.95650 0.90765 1.02224 0.97756 0.92550 0.96534 0.90399 0.86171 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 9.34 71.98 0.67 -2.01 16 2 C 0.10 2.37 3.30 44.92 0.15 2.52 16 3 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 4 N -0.84 -20.50 9.11 -168.68 -1.54 -22.04 16 5 C 0.07 1.95 2.62 30.63 0.08 2.03 16 6 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 7 C 0.02 0.81 4.67 86.31 0.40 1.22 16 8 N -0.54 -23.68 4.72 -899.76 -4.24 -27.93 16 9 C 0.21 11.28 4.72 85.56 0.40 11.68 16 10 C -0.53 -29.97 8.49 25.60 0.22 -29.75 16 11 H 0.06 3.56 7.14 -2.91 -0.02 3.54 16 12 C 0.00 0.10 5.46 84.66 0.46 0.57 16 13 N -0.93 -56.39 13.29 21.45 0.28 -56.10 16 14 Si 0.97 43.96 29.54 68.60 2.03 45.98 16 15 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 16 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 17 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 18 C 0.03 1.08 5.46 86.31 0.47 1.55 16 19 C 0.07 2.18 7.01 72.01 0.50 2.69 16 20 O -0.38 -11.33 9.21 -148.98 -1.37 -12.70 16 21 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.05 1.20 7.69 -2.39 -0.02 1.18 16 24 H 0.34 8.59 7.33 -89.70 -0.66 7.94 16 25 H 0.34 8.54 8.44 -89.69 -0.76 7.78 16 26 H 0.03 0.93 6.61 -2.39 -0.02 0.92 16 27 H 0.07 2.68 8.09 -2.38 -0.02 2.66 16 28 H -0.04 -2.36 8.12 -2.39 -0.02 -2.38 16 29 H 0.00 0.25 8.04 -2.39 -0.02 0.23 16 30 H 0.27 15.02 8.31 -92.70 -0.77 14.25 16 31 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.08 3.21 6.82 -2.39 -0.02 3.19 16 33 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 34 H 0.06 1.72 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -63.03 271.83 -1.81 -64.84 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -0.33 Total: 17.47 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: 3.36 Total: -9.52 kcal Atomic # 7 Polarization: -100.57 SS G_CDS: -5.50 Total: -106.07 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -1.37 Total: -12.70 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -63.03 -1.81 -64.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169182801.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.131 kcal (2) G-P(sol) polarization free energy of solvation -63.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds