Wall clock time and date at job start Mon Mar 30 2020 02:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46723 * 2 1 4 4 C 1.50705 * 109.46819 * 119.99783 * 2 1 3 5 5 H 1.08002 * 119.99751 * 120.00527 * 4 2 1 6 6 C 1.37876 * 120.00242 * 299.99938 * 4 2 1 7 7 N 1.31523 * 119.99648 * 0.02562 * 6 4 2 8 8 Si 1.86790 * 120.00177 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47165 * 59.99987 * 8 6 4 10 10 H 1.48503 * 109.47264 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47381 * 300.00337 * 8 6 4 12 12 C 1.53002 * 109.47073 * 239.99807 * 2 1 3 13 13 C 1.53000 * 109.47190 * 64.99967 * 12 2 1 14 14 C 1.52997 * 109.47040 * 179.97438 * 13 12 2 15 15 H 1.08995 * 115.74202 * 329.40059 * 14 13 12 16 16 O 1.42905 * 117.76950 * 116.39187 * 14 13 12 17 17 C 1.42902 * 64.73226 * 106.84013 * 16 14 13 18 18 C 1.53000 * 117.77191 * 253.15628 * 17 16 14 19 19 C 1.53003 * 117.76967 * 106.83783 * 17 16 14 20 20 O 1.42902 * 109.46607 * 116.39248 * 19 17 16 21 21 H 1.08998 * 109.47020 * 60.00620 * 1 2 3 22 22 H 1.09008 * 109.46711 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47158 * 299.99912 * 1 2 3 24 24 H 0.96998 * 119.99375 * 179.97438 * 7 6 4 25 25 H 1.09004 * 109.46806 * 304.99723 * 12 2 1 26 26 H 1.08997 * 109.46651 * 184.99776 * 12 2 1 27 27 H 1.08999 * 109.47151 * 59.99474 * 13 12 2 28 28 H 1.09005 * 109.47113 * 299.99873 * 13 12 2 29 29 H 1.08997 * 109.47284 * 8.61103 * 18 17 16 30 30 H 1.09000 * 109.46936 * 128.60703 * 18 17 16 31 31 H 1.09002 * 109.46940 * 248.61024 * 18 17 16 32 32 H 1.09005 * 109.47072 * 236.38520 * 19 17 16 33 33 H 1.08990 * 109.47489 * 356.39559 * 19 17 16 34 34 H 0.96701 * 113.99932 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.8074 -1.1189 4.0078 10 1 1.8278 -0.4190 5.2205 11 1 1.8280 -2.5197 4.0083 12 6 2.0400 -0.7213 -1.2492 13 6 1.6353 0.0688 -2.4953 14 6 2.1458 -0.6522 -3.7445 15 1 3.0675 -1.2203 -3.6196 16 8 1.1764 -1.1504 -4.6686 17 6 1.8932 0.0075 -5.1016 18 6 1.1472 1.3433 -5.1173 19 6 2.9516 -0.1754 -6.1912 20 8 2.5660 0.5552 -7.3573 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 0.7081 1.1609 3.4844 25 1 1.6054 -1.7199 -1.2950 26 1 3.1263 -0.7994 -1.2055 27 1 2.0698 1.0674 -2.4494 28 1 0.5489 0.1470 -2.5390 29 1 0.1778 1.2237 -4.6336 30 1 1.7308 2.0916 -4.5811 31 1 1.0017 1.6661 -6.1482 32 1 3.9115 0.1952 -5.8312 33 1 3.0400 -1.2333 -6.4380 34 1 3.1925 0.4849 -8.0905 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000206151952.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:14 Heat of formation + Delta-G solvation = -83.325185 kcal Electronic energy + Delta-G solvation = -14380.425758 eV Core-core repulsion = 11893.062257 eV Total energy + Delta-G solvation = -2487.363501 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.62210 -36.78892 -35.41701 -32.22475 -30.64520 -29.10523 -26.95427 -25.22611 -24.47504 -21.79771 -19.59535 -19.10238 -17.62296 -16.29938 -16.02193 -15.46964 -14.95801 -14.46816 -14.12648 -13.54044 -13.07843 -13.03618 -12.56968 -12.15196 -12.10128 -11.58016 -11.30089 -10.90297 -10.77210 -10.68832 -10.44333 -10.32463 -10.12097 -10.07064 -9.67925 -9.49858 -9.01598 -8.71686 -8.27796 -5.93665 -4.00125 3.34175 3.37370 3.38812 3.41611 3.95031 4.39641 4.47215 4.79696 4.86982 4.95658 5.26553 5.36488 5.37435 5.53344 5.69676 5.85546 6.01257 6.07328 6.26795 6.27268 6.47127 6.72066 6.81648 6.95240 7.11773 7.27238 7.37322 7.47453 7.77992 8.04552 8.22284 8.51456 9.03760 9.64449 11.12159 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.068304 B = 0.005339 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.832595 B = 5242.928073 C = 5404.078889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.042 3.958 3 H 0.025 0.975 4 C -0.513 4.513 5 H 0.053 0.947 6 C 0.060 3.940 7 N -0.891 5.891 8 Si 0.890 3.110 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.278 1.278 12 C -0.104 4.104 13 C -0.109 4.109 14 C 0.014 3.986 15 H 0.119 0.881 16 O -0.351 6.351 17 C 0.001 3.999 18 C -0.123 4.123 19 C 0.101 3.899 20 O -0.566 6.566 21 H 0.008 0.992 22 H 0.023 0.977 23 H 0.079 0.921 24 H 0.259 0.741 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.508 0.406 -14.922 15.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.024 3.976 3 H 0.043 0.957 4 C -0.551 4.551 5 H 0.071 0.929 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.718 3.282 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.204 1.204 12 C -0.142 4.142 13 C -0.146 4.146 14 C -0.043 4.043 15 H 0.137 0.863 16 O -0.272 6.272 17 C -0.038 4.038 18 C -0.180 4.180 19 C 0.023 3.977 20 O -0.372 6.372 21 H 0.027 0.973 22 H 0.042 0.958 23 H 0.098 0.902 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 3.657 0.424 -14.469 14.930 hybrid contribution 0.688 -0.904 0.530 1.253 sum 4.344 -0.479 -13.938 14.607 Atomic orbital electron populations 1.21843 0.98973 0.98819 0.99885 1.18656 0.92555 0.95696 0.90717 0.95662 1.21187 1.30928 1.12227 0.90768 0.92875 1.24970 0.95166 0.95020 0.98927 1.69889 1.36864 1.23030 1.23262 0.86695 0.79152 0.79807 0.82533 1.20346 1.21347 1.20367 1.21669 0.99706 0.98692 0.94099 1.21703 1.01971 0.99003 0.91924 1.24267 0.94128 0.98162 0.87703 0.86301 1.91683 1.54104 1.43419 1.37985 1.22682 0.97371 0.88687 0.95063 1.21428 1.00111 0.93136 1.03333 1.21831 0.95263 0.95549 0.85039 1.86477 1.51975 1.73779 1.24950 0.97294 0.95812 0.90200 0.93077 0.93313 0.93230 0.90532 0.90748 0.91521 0.90844 0.90504 0.91623 0.92675 0.77268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 8.73 37.16 0.32 -3.07 16 2 C 0.04 1.06 2.30 -91.77 -0.21 0.84 16 3 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 4 C -0.51 -14.23 8.56 -34.44 -0.29 -14.52 16 5 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -25.82 11.32 55.43 0.63 -25.20 16 8 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C -0.10 -2.14 4.59 -26.73 -0.12 -2.26 16 13 C -0.11 -1.89 4.44 -26.73 -0.12 -2.00 16 14 C 0.01 0.22 6.33 -26.73 -0.17 0.05 16 15 H 0.12 1.60 8.09 -51.93 -0.42 1.18 16 16 O -0.35 -6.19 14.38 -35.23 -0.51 -6.70 16 17 C 0.00 0.02 3.20 -90.62 -0.29 -0.27 16 18 C -0.12 -1.62 8.90 37.16 0.33 -1.29 16 19 C 0.10 1.09 7.34 37.16 0.27 1.36 16 20 O -0.57 -5.75 12.17 -35.23 -0.43 -6.18 16 21 H 0.01 0.18 6.56 -51.93 -0.34 -0.16 16 22 H 0.02 0.57 8.14 -51.92 -0.42 0.14 16 23 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 24 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.08 1.25 8.08 -51.93 -0.42 0.83 16 28 H 0.07 1.38 6.50 -51.93 -0.34 1.04 16 29 H 0.07 0.93 8.05 -51.93 -0.42 0.52 16 30 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 31 H 0.08 0.98 6.88 -51.93 -0.36 0.62 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 34 H 0.38 1.87 9.12 45.56 0.42 2.29 16 LS Contribution 280.76 15.07 4.23 4.23 Total: -1.00 -31.41 280.76 -6.16 -37.57 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -4.69 Total: -0.58 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: -0.37 Total: -19.59 kcal Atomic # 7 Polarization: -25.82 SS G_CDS: 0.63 Total: -25.20 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -0.94 Total: -12.87 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.41 -6.16 -37.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000206151952.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.759 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds