Wall clock time and date at job start Mon Mar 30 2020 02:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46723 * 2 1 4 4 C 1.50705 * 109.46819 * 119.99783 * 2 1 3 5 5 H 1.08002 * 119.99751 * 120.00527 * 4 2 1 6 6 C 1.37876 * 120.00242 * 299.99938 * 4 2 1 7 7 N 1.31523 * 119.99648 * 0.02562 * 6 4 2 8 8 Si 1.86790 * 120.00177 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47165 * 59.99987 * 8 6 4 10 10 H 1.48503 * 109.47264 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47381 * 300.00337 * 8 6 4 12 12 C 1.53002 * 109.47073 * 239.99807 * 2 1 3 13 13 C 1.53000 * 109.47190 * 64.99967 * 12 2 1 14 14 C 1.52997 * 109.47040 * 179.97438 * 13 12 2 15 15 H 1.08995 * 115.74202 * 329.40059 * 14 13 12 16 16 O 1.42905 * 117.76950 * 116.39187 * 14 13 12 17 17 C 1.42902 * 64.73226 * 106.84013 * 16 14 13 18 18 C 1.53000 * 117.77191 * 253.15628 * 17 16 14 19 19 C 1.53003 * 117.76967 * 106.83783 * 17 16 14 20 20 O 1.42902 * 109.46607 * 116.39248 * 19 17 16 21 21 H 1.08998 * 109.47020 * 60.00620 * 1 2 3 22 22 H 1.09008 * 109.46711 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47158 * 299.99912 * 1 2 3 24 24 H 0.96998 * 119.99375 * 179.97438 * 7 6 4 25 25 H 1.09004 * 109.46806 * 304.99723 * 12 2 1 26 26 H 1.08997 * 109.46651 * 184.99776 * 12 2 1 27 27 H 1.08999 * 109.47151 * 59.99474 * 13 12 2 28 28 H 1.09005 * 109.47113 * 299.99873 * 13 12 2 29 29 H 1.08997 * 109.47284 * 8.61103 * 18 17 16 30 30 H 1.09000 * 109.46936 * 128.60703 * 18 17 16 31 31 H 1.09002 * 109.46940 * 248.61024 * 18 17 16 32 32 H 1.09005 * 109.47072 * 236.38520 * 19 17 16 33 33 H 1.08990 * 109.47489 * 356.39559 * 19 17 16 34 34 H 0.96701 * 113.99932 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.8074 -1.1189 4.0078 10 1 1.8278 -0.4190 5.2205 11 1 1.8280 -2.5197 4.0083 12 6 2.0400 -0.7213 -1.2492 13 6 1.6353 0.0688 -2.4953 14 6 2.1458 -0.6522 -3.7445 15 1 3.0675 -1.2203 -3.6196 16 8 1.1764 -1.1504 -4.6686 17 6 1.8932 0.0075 -5.1016 18 6 1.1472 1.3433 -5.1173 19 6 2.9516 -0.1754 -6.1912 20 8 2.5660 0.5552 -7.3573 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 0.7081 1.1609 3.4844 25 1 1.6054 -1.7199 -1.2950 26 1 3.1263 -0.7994 -1.2055 27 1 2.0698 1.0674 -2.4494 28 1 0.5489 0.1470 -2.5390 29 1 0.1778 1.2237 -4.6336 30 1 1.7308 2.0916 -4.5811 31 1 1.0017 1.6661 -6.1482 32 1 3.9115 0.1952 -5.8312 33 1 3.0400 -1.2333 -6.4380 34 1 3.1925 0.4849 -8.0905 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000206151952.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:13 Heat of formation + Delta-G solvation = -105.864951 kcal Electronic energy + Delta-G solvation = -14381.403156 eV Core-core repulsion = 11893.062257 eV Total energy + Delta-G solvation = -2488.340899 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.78898 -37.61059 -37.22470 -34.16071 -31.76901 -30.79491 -27.85938 -27.29289 -26.08546 -23.22190 -20.94833 -20.71481 -18.41592 -18.24149 -17.28250 -16.64813 -16.40058 -16.08471 -15.43125 -14.77231 -14.66887 -14.46405 -13.86979 -13.61847 -13.50820 -13.11624 -12.87905 -12.79683 -12.41858 -12.26555 -12.12291 -12.00959 -11.45665 -11.40780 -11.13897 -11.06362 -10.76351 -10.48522 -10.39205 -8.06240 -6.20293 1.43013 1.44353 1.51888 2.29838 2.45682 2.98979 3.21076 3.38902 3.79442 3.89199 4.01904 4.17114 4.27429 4.45118 4.51965 4.69310 4.81239 4.85712 4.90635 4.97097 4.99686 5.03346 5.23856 5.30092 5.33860 5.37127 5.53904 5.64013 6.00826 6.17590 6.41352 6.90542 6.92143 7.48056 8.98263 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.068304 B = 0.005339 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.832595 B = 5242.928073 C = 5404.078889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.036 3.964 3 H 0.003 0.997 4 C -0.534 4.534 5 H 0.053 0.947 6 C 0.010 3.990 7 N -0.919 5.919 8 Si 0.954 3.046 9 H -0.269 1.269 10 H -0.285 1.285 11 H -0.274 1.274 12 C -0.093 4.093 13 C -0.099 4.099 14 C 0.010 3.990 15 H 0.141 0.859 16 O -0.388 6.388 17 C 0.006 3.994 18 C -0.125 4.125 19 C 0.104 3.896 20 O -0.582 6.582 21 H 0.030 0.970 22 H 0.018 0.982 23 H 0.051 0.949 24 H 0.260 0.740 25 H 0.040 0.960 26 H 0.059 0.941 27 H 0.087 0.913 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.847 0.101 -15.826 16.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.018 3.982 3 H 0.021 0.979 4 C -0.573 4.573 5 H 0.071 0.929 6 C -0.189 4.189 7 N -0.559 5.559 8 Si 0.779 3.221 9 H -0.194 1.194 10 H -0.211 1.211 11 H -0.199 1.199 12 C -0.131 4.131 13 C -0.136 4.136 14 C -0.046 4.046 15 H 0.159 0.841 16 O -0.310 6.310 17 C -0.032 4.032 18 C -0.182 4.182 19 C 0.026 3.974 20 O -0.392 6.392 21 H 0.049 0.951 22 H 0.037 0.963 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.106 0.894 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.078 0.922 34 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 5.013 0.117 -15.401 16.197 hybrid contribution 0.248 -0.761 0.761 1.105 sum 5.261 -0.644 -14.640 15.570 Atomic orbital electron populations 1.21698 0.99022 0.98304 0.99555 1.18665 0.92575 0.94732 0.92240 0.97887 1.21597 1.31072 1.12449 0.92133 0.92875 1.25765 0.95365 0.95743 1.01980 1.70026 1.37763 1.24258 1.23855 0.85683 0.78944 0.78648 0.78806 1.19383 1.21051 1.19912 1.21477 1.00085 0.98007 0.93523 1.21517 1.01041 0.99388 0.91686 1.24199 0.94165 0.98994 0.87257 0.84131 1.91660 1.55206 1.44900 1.39225 1.23169 0.97010 0.87894 0.95142 1.21476 0.99611 0.93380 1.03741 1.21828 0.94848 0.96160 0.84534 1.86409 1.53446 1.73678 1.25664 0.95110 0.96269 0.92983 0.93123 0.94134 0.92183 0.89439 0.92321 0.93044 0.89423 0.89933 0.88822 0.92220 0.74563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.41 8.73 71.98 0.63 -5.78 16 2 C 0.04 1.83 2.30 -11.54 -0.03 1.80 16 3 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 4 C -0.53 -29.71 8.56 25.60 0.22 -29.49 16 5 H 0.05 2.88 7.74 -2.91 -0.02 2.85 16 6 C 0.01 0.54 5.30 84.65 0.45 0.99 16 7 N -0.92 -53.88 11.32 21.45 0.24 -53.63 16 8 Si 0.95 43.89 29.54 68.60 2.03 45.91 16 9 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 10 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 12 C -0.09 -3.77 4.59 30.59 0.14 -3.63 16 13 C -0.10 -3.33 4.44 30.59 0.14 -3.20 16 14 C 0.01 0.30 6.33 30.59 0.19 0.49 16 15 H 0.14 3.42 8.09 -2.39 -0.02 3.40 16 16 O -0.39 -13.29 14.38 -148.98 -2.14 -15.43 16 17 C 0.01 0.17 3.20 -10.79 -0.03 0.13 16 18 C -0.13 -3.11 8.90 71.98 0.64 -2.47 16 19 C 0.10 1.92 7.34 71.98 0.53 2.45 16 20 O -0.58 -10.13 12.17 -148.98 -1.81 -11.94 16 21 H 0.03 1.35 6.56 -2.39 -0.02 1.34 16 22 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 23 H 0.05 2.89 6.07 -2.39 -0.01 2.87 16 24 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 25 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.09 2.73 8.08 -2.39 -0.02 2.71 16 28 H 0.06 2.15 6.50 -2.38 -0.02 2.14 16 29 H 0.05 1.41 8.05 -2.39 -0.02 1.40 16 30 H 0.09 1.91 8.10 -2.39 -0.02 1.89 16 31 H 0.08 1.95 6.88 -2.39 -0.02 1.94 16 32 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 34 H 0.40 2.69 9.12 -74.06 -0.68 2.01 16 Total: -1.00 -66.90 280.76 1.59 -65.31 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 0.40 Total: 8.49 kcal Atomic # 6 Polarization: -41.58 SS G_CDS: 2.87 Total: -38.71 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: 0.24 Total: -53.63 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -3.95 Total: -27.37 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -66.90 1.59 -65.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000206151952.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.554 kcal (2) G-P(sol) polarization free energy of solvation -66.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds