Wall clock time and date at job start Mon Mar 30 2020 03:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47066 * 2 1 4 4 C 1.50699 * 109.46932 * 120.00002 * 2 1 3 5 5 N 1.29904 * 125.05355 * 120.00250 * 4 2 1 6 6 C 1.36286 * 108.64575 * 180.02562 * 5 4 2 7 7 C 1.41144 * 126.69621 * 179.97438 * 6 5 4 8 8 H 1.08005 * 120.00068 * 185.69119 * 7 6 5 9 9 C 1.39695 * 120.00068 * 5.42848 * 7 6 5 10 10 N 1.31039 * 119.99771 * 354.28173 * 9 7 6 11 11 Si 1.86797 * 120.00127 * 174.28859 * 9 7 6 12 12 H 1.48503 * 109.47331 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47427 * 119.99407 * 11 9 7 14 14 H 1.48501 * 109.46769 * 239.99658 * 11 9 7 15 15 C 1.39080 * 106.60944 * 0.24284 * 6 5 4 16 16 Cl 1.73603 * 126.77221 * 179.76205 * 15 6 5 17 17 O 1.34116 * 125.05342 * 300.03567 * 4 2 1 18 18 H 1.09006 * 109.47067 * 300.00036 * 1 2 3 19 19 H 1.08994 * 109.47409 * 60.00294 * 1 2 3 20 20 H 1.09002 * 109.47164 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.46524 * 239.99771 * 2 1 3 22 22 H 1.08994 * 109.47458 * 59.99702 * 3 2 1 23 23 H 1.08997 * 109.47085 * 180.02562 * 3 2 1 24 24 H 1.09003 * 109.47288 * 299.99912 * 3 2 1 25 25 H 0.97004 * 119.99993 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 2.7823 -1.7711 1.2257 6 6 3.0361 -2.1310 2.5154 7 6 3.8113 -3.2285 2.9479 8 1 3.8673 -3.4692 3.9993 9 6 4.5016 -4.0066 2.0154 10 7 4.3414 -3.7886 0.7333 11 14 5.6528 -5.3581 2.5963 12 1 5.6577 -5.4002 4.0808 13 1 5.1896 -6.6653 2.0653 14 1 7.0269 -5.0830 2.1048 15 6 2.3772 -1.2097 3.3224 16 17 2.3468 -1.1826 5.0579 17 8 1.7709 -0.3420 2.4933 18 1 -0.3633 0.5139 0.8900 19 1 -0.3634 0.5137 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 1.8933 -0.5139 -0.8900 22 1 1.6767 1.9563 0.8899 23 1 3.1300 1.4425 -0.0005 24 1 1.6767 1.9563 -0.8900 25 1 4.8204 -4.3292 0.0858 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214393601.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:42 Heat of formation + Delta-G solvation = -26.169602 kcal Electronic energy + Delta-G solvation = -12333.745894 eV Core-core repulsion = 9952.477910 eV Total energy + Delta-G solvation = -2381.267984 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 215.045 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.17784 -37.38087 -36.34606 -36.12857 -34.14099 -30.43643 -28.04738 -27.22013 -23.87090 -22.74640 -20.81410 -19.16661 -17.65468 -17.04494 -16.70240 -15.99473 -15.61258 -14.78800 -14.44071 -14.03226 -13.15986 -13.05791 -13.00113 -12.82499 -12.67175 -12.27903 -12.15838 -12.03347 -11.90640 -11.85232 -11.75366 -10.83713 -10.70040 -9.22208 -8.52635 -6.45480 0.84865 0.87695 1.40520 1.44736 1.57079 2.23900 2.25993 2.93649 3.35043 3.69991 4.13813 4.19354 4.43008 4.79531 4.89626 4.92998 4.94262 5.03404 5.20083 5.33105 5.34672 5.46716 5.59686 6.22758 6.63556 6.84767 7.55336 8.43774 Molecular weight = 215.05amu Principal moments of inertia in cm(-1) A = 0.028056 B = 0.011621 C = 0.008695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.775560 B = 2408.927999 C = 3219.599386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.006 3.994 3 C -0.137 4.137 4 C 0.179 3.821 5 N -0.486 5.486 6 C 0.179 3.821 7 C -0.466 4.466 8 H 0.090 0.910 9 C 0.028 3.972 10 N -0.789 5.789 11 Si 0.992 3.008 12 H -0.256 1.256 13 H -0.263 1.263 14 H -0.264 1.264 15 C -0.246 4.246 16 Cl 0.001 6.999 17 O -0.227 6.227 18 H 0.055 0.945 19 H 0.104 0.896 20 H 0.044 0.956 21 H 0.106 0.894 22 H 0.055 0.945 23 H 0.044 0.956 24 H 0.104 0.896 25 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.097 4.679 -1.757 5.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.013 4.013 3 C -0.194 4.194 4 C -0.030 4.030 5 N -0.220 5.220 6 C 0.063 3.937 7 C -0.498 4.498 8 H 0.108 0.892 9 C -0.190 4.190 10 N -0.414 5.414 11 Si 0.812 3.188 12 H -0.179 1.179 13 H -0.188 1.188 14 H -0.189 1.189 15 C -0.321 4.321 16 Cl 0.029 6.971 17 O -0.119 6.119 18 H 0.074 0.926 19 H 0.123 0.877 20 H 0.064 0.936 21 H 0.124 0.876 22 H 0.074 0.926 23 H 0.063 0.937 24 H 0.123 0.877 25 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.865 4.362 -2.336 5.718 hybrid contribution 0.244 -0.271 1.284 1.335 sum -2.621 4.090 -1.053 4.971 Atomic orbital electron populations 1.21810 0.91642 1.02139 1.03841 1.19867 0.97505 0.95956 0.88018 1.21806 1.00757 0.93026 1.03847 1.27058 0.97043 0.94222 0.84631 1.71430 1.16154 1.12071 1.22323 1.19422 0.94260 0.94269 0.85756 1.19020 1.25808 1.09474 0.95469 0.89230 1.26909 0.97731 1.00011 0.94376 1.70179 1.33720 1.34903 1.02550 0.85013 0.77353 0.76693 0.79764 1.17914 1.18771 1.18899 1.22971 1.22063 1.03114 0.83977 1.98196 1.98287 1.98225 1.02364 1.83791 1.62180 1.48775 1.17165 0.92594 0.87717 0.93647 0.87597 0.92585 0.93686 0.87717 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 9.18 71.98 0.66 -3.10 15 2 C 0.01 0.20 3.39 -11.54 -0.04 0.16 15 3 C -0.14 -3.77 9.18 71.98 0.66 -3.11 15 4 C 0.18 8.61 6.77 88.39 0.60 9.21 15 5 N -0.49 -27.59 9.59 -295.98 -2.84 -30.42 15 6 C 0.18 10.50 6.70 39.37 0.26 10.76 15 7 C -0.47 -26.62 9.24 23.34 0.22 -26.41 15 8 H 0.09 4.89 7.82 -2.91 -0.02 4.87 15 9 C 0.03 1.49 5.49 85.16 0.47 1.96 15 10 N -0.79 -43.71 11.98 21.79 0.26 -43.44 15 11 Si 0.99 39.58 29.56 68.60 2.03 41.61 15 12 H -0.26 -9.90 7.11 99.48 0.71 -9.20 15 13 H -0.26 -9.96 7.11 99.48 0.71 -9.25 15 14 H -0.26 -10.08 7.11 99.48 0.71 -9.37 15 15 C -0.25 -13.23 8.18 68.02 0.56 -12.67 15 16 Cl 0.00 0.06 29.14 -2.72 -0.08 -0.02 15 17 O -0.23 -11.53 10.73 -2.17 -0.02 -11.55 15 18 H 0.05 1.57 8.14 -2.38 -0.02 1.55 15 19 H 0.10 2.00 8.14 -2.39 -0.02 1.98 15 20 H 0.04 1.37 8.14 -2.39 -0.02 1.35 15 21 H 0.11 3.56 8.14 -2.39 -0.02 3.54 15 22 H 0.06 1.58 8.14 -2.39 -0.02 1.56 15 23 H 0.04 1.36 8.14 -2.39 -0.02 1.34 15 24 H 0.10 2.01 8.14 -2.39 -0.02 1.99 15 25 H 0.28 14.04 8.30 -92.71 -0.77 13.27 15 Total: -1.00 -67.32 243.54 3.92 -63.40 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: 1.19 Total: 3.63 kcal Atomic # 6 Polarization: -26.58 SS G_CDS: 3.38 Total: -23.20 kcal Atomic # 7 Polarization: -71.29 SS G_CDS: -2.58 Total: -73.87 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.02 Total: -11.55 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Atomic # 17 Polarization: 0.06 SS G_CDS: -0.08 Total: -0.02 kcal Total: -67.32 3.92 -63.40 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214393601.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.228 kcal (2) G-P(sol) polarization free energy of solvation -67.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds