Wall clock time and date at job start Mon Mar 30 2020 02:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47092 * 2 1 4 4 C 1.50709 * 109.46792 * 240.00777 * 2 1 3 5 5 H 1.08001 * 119.99684 * 240.00336 * 4 2 1 6 6 C 1.37872 * 120.00162 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99963 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00073 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46997 * 60.00240 * 8 6 4 10 10 H 1.48502 * 109.47229 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47179 * 300.00326 * 8 6 4 12 12 C 1.52996 * 109.47559 * 120.00987 * 2 1 3 13 13 C 1.53007 * 109.46704 * 294.99396 * 12 2 1 14 14 C 1.52999 * 109.47003 * 179.97438 * 13 12 2 15 15 H 1.08997 * 115.74167 * 329.40601 * 14 13 12 16 16 O 1.42905 * 117.76861 * 116.39595 * 14 13 12 17 17 C 1.42898 * 64.73236 * 106.83922 * 16 14 13 18 18 C 1.53000 * 117.77090 * 253.15533 * 17 16 14 19 19 C 1.53007 * 117.77118 * 106.84035 * 17 16 14 20 20 O 1.42899 * 109.46917 * 118.98251 * 19 17 16 21 21 H 1.08994 * 109.47346 * 59.99723 * 1 2 3 22 22 H 1.08997 * 109.47092 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46784 * 299.99343 * 1 2 3 24 24 H 0.97004 * 120.00250 * 180.02562 * 7 6 4 25 25 H 1.08999 * 109.47101 * 175.00045 * 12 2 1 26 26 H 1.08998 * 109.47286 * 54.99127 * 12 2 1 27 27 H 1.09002 * 109.46848 * 59.99938 * 13 12 2 28 28 H 1.08997 * 109.47528 * 300.00044 * 13 12 2 29 29 H 1.09002 * 109.46962 * 126.01988 * 18 17 16 30 30 H 1.09004 * 109.46783 * 246.01746 * 18 17 16 31 31 H 1.08996 * 109.47223 * 6.02213 * 18 17 16 32 32 H 1.09000 * 109.47064 * 238.98035 * 19 17 16 33 33 H 1.08997 * 109.47008 * 358.98063 * 19 17 16 34 34 H 0.96702 * 114.00041 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2307 5 1 2.6531 -1.5885 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9435 0.8304 -2.6033 8 14 2.3211 -1.1200 -4.0082 9 1 1.8255 -2.5199 -4.0081 10 1 1.8256 -0.4201 -5.2206 11 1 3.8061 -1.1206 -4.0085 12 6 2.0401 -0.7214 1.2491 13 6 1.6355 0.0687 2.4953 14 6 2.1450 -0.6530 3.7444 15 1 2.2121 -1.7383 3.6698 16 8 3.1109 0.0198 4.5547 17 6 1.7951 -0.0523 5.1073 18 6 0.9595 1.2292 5.1283 19 6 1.5633 -1.0160 6.2729 20 8 1.1371 -0.2805 7.4216 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 0.7087 1.1618 -3.4843 25 1 3.1264 -0.7996 1.2053 26 1 1.6054 -1.7199 1.2949 27 1 0.5491 0.1470 2.5390 28 1 2.0701 1.0672 2.4495 29 1 0.0010 1.0459 4.6427 30 1 0.7911 1.5362 6.1606 31 1 1.4911 2.0184 4.5967 32 1 0.7951 -1.7392 5.9991 33 1 2.4912 -1.5403 6.5009 34 1 0.9714 -0.8289 8.2006 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218906366.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:16 Heat of formation + Delta-G solvation = -83.189533 kcal Electronic energy + Delta-G solvation = -14380.608027 eV Core-core repulsion = 11893.250409 eV Total energy + Delta-G solvation = -2487.357619 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.62218 -36.79559 -35.42761 -32.22554 -30.63106 -29.10471 -26.95685 -25.24437 -24.48269 -21.78344 -19.59162 -19.13664 -17.63267 -16.23592 -16.03973 -15.44535 -14.86185 -14.55874 -14.20356 -13.67874 -13.13001 -12.80691 -12.57917 -12.23841 -11.94631 -11.69944 -11.25339 -10.93026 -10.72699 -10.61154 -10.51460 -10.37550 -10.11627 -10.07231 -9.72703 -9.49124 -9.02182 -8.70037 -8.27770 -5.93577 -4.00010 3.34406 3.38178 3.38959 3.41891 3.93168 4.39761 4.47346 4.79750 4.87225 4.96282 5.26720 5.36131 5.37568 5.53840 5.69379 5.85595 6.01670 6.07759 6.26569 6.28016 6.46489 6.74167 6.80049 6.93262 7.08478 7.25448 7.37220 7.46133 7.77861 8.04559 8.22043 8.51275 9.03913 9.64602 11.12271 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.069750 B = 0.005349 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.336100 B = 5233.730560 C = 5410.451129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.041 3.959 3 H 0.025 0.975 4 C -0.513 4.513 5 H 0.053 0.947 6 C 0.060 3.940 7 N -0.891 5.891 8 Si 0.890 3.110 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.278 1.278 12 C -0.104 4.104 13 C -0.108 4.108 14 C 0.014 3.986 15 H 0.119 0.881 16 O -0.352 6.352 17 C 0.001 3.999 18 C -0.123 4.123 19 C 0.101 3.899 20 O -0.566 6.566 21 H 0.079 0.921 22 H 0.023 0.977 23 H 0.008 0.992 24 H 0.259 0.741 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.886 -3.480 15.323 15.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.023 3.977 3 H 0.043 0.957 4 C -0.551 4.551 5 H 0.071 0.929 6 C -0.141 4.141 7 N -0.531 5.531 8 Si 0.718 3.282 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.203 1.203 12 C -0.141 4.141 13 C -0.146 4.146 14 C -0.043 4.043 15 H 0.137 0.863 16 O -0.272 6.272 17 C -0.038 4.038 18 C -0.180 4.180 19 C 0.023 3.977 20 O -0.372 6.372 21 H 0.098 0.902 22 H 0.043 0.957 23 H 0.027 0.973 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -1.558 -2.746 14.798 15.131 hybrid contribution 0.540 -0.998 -0.524 1.250 sum -1.018 -3.743 14.274 14.791 Atomic orbital electron populations 1.21836 0.98922 0.98770 0.99933 1.18660 0.92551 0.95769 0.90734 0.95723 1.21187 1.30904 1.12244 0.90769 0.92878 1.24965 0.95169 0.95013 0.98923 1.69882 1.36929 1.22981 1.23269 0.86698 0.79201 0.79771 0.82536 1.20359 1.21343 1.20347 1.21665 0.99942 0.98419 0.94113 1.21704 1.01223 0.99659 0.91966 1.24276 0.93173 0.97513 0.89328 0.86302 1.91681 1.18219 1.77480 1.39846 1.22677 0.88420 0.99407 0.93301 1.21432 0.98936 0.94266 1.03400 1.21819 0.98915 0.92028 0.84915 1.86472 1.90259 1.38271 1.22158 0.90205 0.95746 0.97263 0.93074 0.93316 0.93234 0.90093 0.91240 0.90862 0.90399 0.91548 0.91653 0.92658 0.77255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.73 37.16 0.32 -2.95 16 2 C 0.04 1.03 2.30 -91.77 -0.21 0.82 16 3 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 4 C -0.51 -14.26 8.56 -34.44 -0.29 -14.56 16 5 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -25.85 11.32 55.43 0.63 -25.22 16 8 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C -0.10 -2.14 4.59 -26.73 -0.12 -2.26 16 13 C -0.11 -1.88 4.46 -26.73 -0.12 -2.00 16 14 C 0.01 0.21 6.33 -26.73 -0.17 0.04 16 15 H 0.12 1.61 8.09 -51.93 -0.42 1.19 16 16 O -0.35 -6.19 14.37 -35.23 -0.51 -6.70 16 17 C 0.00 0.02 3.21 -90.62 -0.29 -0.27 16 18 C -0.12 -1.63 8.91 37.16 0.33 -1.30 16 19 C 0.10 1.09 7.36 37.16 0.27 1.36 16 20 O -0.57 -5.71 12.07 -35.23 -0.43 -6.14 16 21 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 22 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.01 0.18 6.56 -51.93 -0.34 -0.16 16 24 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.08 1.33 6.38 -51.93 -0.33 1.00 16 28 H 0.07 1.28 8.13 -51.93 -0.42 0.86 16 29 H 0.07 0.88 7.97 -51.93 -0.41 0.47 16 30 H 0.08 0.99 6.78 -51.93 -0.35 0.64 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 34 H 0.38 1.85 9.12 45.56 0.42 2.27 16 LS Contribution 280.53 15.07 4.23 4.23 Total: -1.00 -31.37 280.53 -6.15 -37.53 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -4.68 Total: -0.67 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -0.37 Total: -19.52 kcal Atomic # 7 Polarization: -25.85 SS G_CDS: 0.63 Total: -25.22 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: -0.93 Total: -12.83 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.37 -6.15 -37.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218906366.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.664 kcal (2) G-P(sol) polarization free energy of solvation -31.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds