Wall clock time and date at job start Mon Mar 30 2020 02:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47092 * 2 1 4 4 C 1.50709 * 109.46792 * 240.00777 * 2 1 3 5 5 H 1.08001 * 119.99684 * 240.00336 * 4 2 1 6 6 C 1.37872 * 120.00162 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99963 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00073 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46997 * 60.00240 * 8 6 4 10 10 H 1.48502 * 109.47229 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47179 * 300.00326 * 8 6 4 12 12 C 1.52996 * 109.47559 * 120.00987 * 2 1 3 13 13 C 1.53007 * 109.46704 * 294.99396 * 12 2 1 14 14 C 1.52999 * 109.47003 * 179.97438 * 13 12 2 15 15 H 1.08997 * 115.74167 * 329.40601 * 14 13 12 16 16 O 1.42905 * 117.76861 * 116.39595 * 14 13 12 17 17 C 1.42898 * 64.73236 * 106.83922 * 16 14 13 18 18 C 1.53000 * 117.77090 * 253.15533 * 17 16 14 19 19 C 1.53007 * 117.77118 * 106.84035 * 17 16 14 20 20 O 1.42899 * 109.46917 * 118.98251 * 19 17 16 21 21 H 1.08994 * 109.47346 * 59.99723 * 1 2 3 22 22 H 1.08997 * 109.47092 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46784 * 299.99343 * 1 2 3 24 24 H 0.97004 * 120.00250 * 180.02562 * 7 6 4 25 25 H 1.08999 * 109.47101 * 175.00045 * 12 2 1 26 26 H 1.08998 * 109.47286 * 54.99127 * 12 2 1 27 27 H 1.09002 * 109.46848 * 59.99938 * 13 12 2 28 28 H 1.08997 * 109.47528 * 300.00044 * 13 12 2 29 29 H 1.09002 * 109.46962 * 126.01988 * 18 17 16 30 30 H 1.09004 * 109.46783 * 246.01746 * 18 17 16 31 31 H 1.08996 * 109.47223 * 6.02213 * 18 17 16 32 32 H 1.09000 * 109.47064 * 238.98035 * 19 17 16 33 33 H 1.08997 * 109.47008 * 358.98063 * 19 17 16 34 34 H 0.96702 * 114.00041 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2307 5 1 2.6531 -1.5885 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9435 0.8304 -2.6033 8 14 2.3211 -1.1200 -4.0082 9 1 1.8255 -2.5199 -4.0081 10 1 1.8256 -0.4201 -5.2206 11 1 3.8061 -1.1206 -4.0085 12 6 2.0401 -0.7214 1.2491 13 6 1.6355 0.0687 2.4953 14 6 2.1450 -0.6530 3.7444 15 1 2.2121 -1.7383 3.6698 16 8 3.1109 0.0198 4.5547 17 6 1.7951 -0.0523 5.1073 18 6 0.9595 1.2292 5.1283 19 6 1.5633 -1.0160 6.2729 20 8 1.1371 -0.2805 7.4216 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 0.7087 1.1618 -3.4843 25 1 3.1264 -0.7996 1.2053 26 1 1.6054 -1.7199 1.2949 27 1 0.5491 0.1470 2.5390 28 1 2.0701 1.0672 2.4495 29 1 0.0010 1.0459 4.6427 30 1 0.7911 1.5362 6.1606 31 1 1.4911 2.0184 4.5967 32 1 0.7951 -1.7392 5.9991 33 1 2.4912 -1.5403 6.5009 34 1 0.9714 -0.8289 8.2006 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218906366.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:16 Heat of formation + Delta-G solvation = -105.808979 kcal Electronic energy + Delta-G solvation = -14381.588880 eV Core-core repulsion = 11893.250409 eV Total energy + Delta-G solvation = -2488.338471 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.79257 -37.61090 -37.22994 -34.16905 -31.75440 -30.78733 -27.86053 -27.27263 -26.09529 -23.20579 -20.97160 -20.71520 -18.41588 -18.24606 -17.21536 -16.64941 -16.37143 -16.05211 -15.66641 -14.88522 -14.61534 -14.16054 -13.94439 -13.76460 -13.39933 -13.16382 -12.81740 -12.75065 -12.40172 -12.24880 -12.11551 -12.02008 -11.49693 -11.40883 -11.15500 -11.05362 -10.79071 -10.47517 -10.35997 -8.06490 -6.20822 1.42365 1.43661 1.51267 2.30026 2.45250 2.97767 3.20613 3.38212 3.79320 3.89504 4.01688 4.17971 4.27391 4.44258 4.52064 4.68148 4.79167 4.85458 4.92355 4.99156 5.02911 5.08558 5.20726 5.29324 5.36146 5.41546 5.53167 5.64149 6.01280 6.22928 6.41449 6.90929 6.91943 7.47620 8.97822 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.069750 B = 0.005349 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.336100 B = 5233.730560 C = 5410.451129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.034 3.966 3 H -0.011 1.011 4 C -0.535 4.535 5 H 0.052 0.948 6 C 0.010 3.990 7 N -0.919 5.919 8 Si 0.953 3.047 9 H -0.269 1.269 10 H -0.284 1.284 11 H -0.274 1.274 12 C -0.093 4.093 13 C -0.098 4.098 14 C 0.010 3.990 15 H 0.142 0.858 16 O -0.389 6.389 17 C 0.007 3.993 18 C -0.126 4.126 19 C 0.104 3.896 20 O -0.582 6.582 21 H 0.048 0.952 22 H 0.030 0.970 23 H 0.037 0.963 24 H 0.260 0.740 25 H 0.036 0.964 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.050 0.950 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.049 0.951 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.400 -4.926 16.374 17.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.016 3.984 3 H 0.007 0.993 4 C -0.573 4.573 5 H 0.070 0.930 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.779 3.221 9 H -0.194 1.194 10 H -0.210 1.210 11 H -0.200 1.200 12 C -0.131 4.131 13 C -0.135 4.135 14 C -0.047 4.047 15 H 0.160 0.840 16 O -0.311 6.311 17 C -0.032 4.032 18 C -0.183 4.183 19 C 0.027 3.973 20 O -0.391 6.391 21 H 0.067 0.933 22 H 0.049 0.951 23 H 0.056 0.944 24 H 0.069 0.931 25 H 0.055 0.945 26 H 0.082 0.918 27 H 0.112 0.888 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.069 0.931 32 H 0.112 0.888 33 H 0.078 0.922 34 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -2.076 -4.206 15.879 16.557 hybrid contribution 0.687 -0.495 -0.802 1.166 sum -1.389 -4.701 15.077 15.854 Atomic orbital electron populations 1.21663 0.97904 0.99039 0.99794 1.18674 0.93453 0.94051 0.92219 0.99269 1.21602 1.31060 1.12481 0.92205 0.92976 1.25761 0.95367 0.95747 1.01969 1.70026 1.37815 1.24178 1.23854 0.85689 0.78664 0.78937 0.78824 1.19361 1.20991 1.19952 1.21472 0.99063 0.98978 0.93544 1.21516 1.01871 0.98358 0.91772 1.24220 0.93309 0.98131 0.89005 0.84036 1.91659 1.20172 1.78056 1.41221 1.23169 0.86480 0.99849 0.93680 1.21481 0.99277 0.93743 1.03755 1.21814 1.00194 0.91224 0.84107 1.86404 1.90252 1.39460 1.23029 0.93319 0.95083 0.94410 0.93121 0.94523 0.91802 0.88844 0.93136 0.89466 0.89749 0.93142 0.88816 0.92221 0.74541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.99 8.73 71.98 0.63 -5.36 16 2 C 0.03 1.75 2.30 -11.54 -0.03 1.72 16 3 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 4 C -0.54 -29.97 8.56 25.60 0.22 -29.75 16 5 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 6 C 0.01 0.55 5.30 84.65 0.45 1.00 16 7 N -0.92 -54.06 11.32 21.45 0.24 -53.82 16 8 Si 0.95 44.09 29.54 68.60 2.03 46.12 16 9 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 11 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 12 C -0.09 -3.78 4.59 30.60 0.14 -3.64 16 13 C -0.10 -3.31 4.46 30.60 0.14 -3.18 16 14 C 0.01 0.28 6.33 30.59 0.19 0.48 16 15 H 0.14 3.43 8.09 -2.39 -0.02 3.41 16 16 O -0.39 -13.40 14.37 -148.98 -2.14 -15.54 16 17 C 0.01 0.18 3.21 -10.79 -0.03 0.14 16 18 C -0.13 -3.14 8.91 71.98 0.64 -2.49 16 19 C 0.10 1.92 7.36 71.98 0.53 2.45 16 20 O -0.58 -9.99 12.07 -148.98 -1.80 -11.79 16 21 H 0.05 2.61 6.07 -2.39 -0.01 2.60 16 22 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.04 1.52 6.56 -2.39 -0.02 1.51 16 24 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 25 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.09 2.89 6.38 -2.39 -0.02 2.88 16 28 H 0.05 1.89 8.13 -2.39 -0.02 1.87 16 29 H 0.09 1.91 7.97 -2.39 -0.02 1.89 16 30 H 0.08 1.99 6.78 -2.38 -0.02 1.97 16 31 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 1.05 8.13 -2.39 -0.02 1.04 16 34 H 0.40 2.61 9.12 -74.06 -0.68 1.93 16 Total: -1.00 -67.52 280.53 1.60 -65.91 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: 0.40 Total: 7.75 kcal Atomic # 6 Polarization: -41.51 SS G_CDS: 2.88 Total: -38.63 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: 0.24 Total: -53.82 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -3.94 Total: -27.33 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -67.52 1.60 -65.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218906366.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.895 kcal (2) G-P(sol) polarization free energy of solvation -67.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds