Wall clock time and date at job start Mon Mar 30 2020 03:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46959 * 111.00258 * 2 1 4 4 C 1.53052 * 109.36369 * 183.19125 * 3 2 1 5 5 N 1.46954 * 109.36458 * 301.59694 * 4 3 2 6 6 C 1.46893 * 111.00160 * 183.19278 * 5 4 3 7 7 C 1.52994 * 109.47375 * 75.75631 * 6 5 4 8 8 H 1.09004 * 109.47252 * 302.90150 * 7 6 5 9 9 O 1.42898 * 109.47042 * 62.89775 * 7 6 5 10 10 C 1.50702 * 109.47417 * 182.89728 * 7 6 5 11 11 H 1.07998 * 119.99679 * 0.02562 * 10 7 6 12 12 C 1.37877 * 120.00123 * 179.97438 * 10 7 6 13 13 N 1.31519 * 119.99951 * 180.02562 * 12 10 7 14 14 Si 1.86801 * 119.99993 * 0.02562 * 12 10 7 15 15 H 1.48497 * 109.47056 * 89.99908 * 14 12 10 16 16 H 1.48502 * 109.46927 * 209.99679 * 14 12 10 17 17 H 1.48491 * 109.47258 * 329.99613 * 14 12 10 18 18 C 1.46952 * 110.88082 * 59.31974 * 5 4 3 19 19 C 1.46954 * 111.00056 * 123.80032 * 2 1 3 20 20 H 1.09002 * 109.46864 * 296.20688 * 1 2 3 21 21 H 1.09002 * 109.46808 * 56.19761 * 1 2 3 22 22 H 1.08996 * 109.47392 * 176.20281 * 1 2 3 23 23 H 1.08994 * 109.49069 * 63.21976 * 3 2 1 24 24 H 1.09007 * 109.48712 * 303.15614 * 3 2 1 25 25 H 1.09002 * 109.48372 * 181.63053 * 4 3 2 26 26 H 1.08994 * 109.48790 * 61.56444 * 4 3 2 27 27 H 1.08996 * 109.47248 * 195.76314 * 6 5 4 28 28 H 1.08997 * 109.46900 * 315.75779 * 6 5 4 29 29 H 0.96700 * 113.99730 * 60.00554 * 9 7 6 30 30 H 0.96991 * 119.99730 * 180.02562 * 13 12 10 31 31 H 1.09006 * 109.48688 * 60.64607 * 18 5 4 32 32 H 1.08995 * 109.49113 * 180.69017 * 18 5 4 33 33 H 1.09007 * 109.48934 * 56.84049 * 19 2 1 34 34 H 1.09000 * 109.50327 * 296.78818 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5235 1.3290 -0.0804 5 7 4.0502 0.5658 1.0597 6 6 5.5191 0.5658 1.0597 7 6 6.0292 1.9250 1.5425 8 1 5.6240 2.7120 0.9064 9 8 5.6093 2.1395 2.8915 10 6 7.5345 1.9496 1.4751 11 1 8.0734 1.0826 1.1226 12 6 8.2236 3.0793 1.8623 13 7 9.5372 3.1009 1.8030 14 14 7.2913 4.5791 2.4713 15 1 7.1115 4.4865 3.9424 16 1 8.0598 5.8066 2.1428 17 1 5.9617 4.6365 1.8127 18 6 3.5235 -0.8061 1.0597 19 6 1.9957 -0.7632 1.1400 20 1 -0.3633 0.4538 0.9221 21 1 -0.3633 0.5717 -0.8540 22 1 -0.3634 -1.0254 -0.0681 23 1 1.6939 1.8774 0.9173 24 1 1.6014 1.9129 -0.8603 25 1 3.9179 2.3448 -0.0513 26 1 3.8253 0.8478 -1.0106 27 1 5.8824 -0.2164 1.7262 28 1 5.8824 0.3795 0.0491 29 1 5.9338 1.4752 3.5147 30 1 10.0220 3.8955 2.0757 31 1 3.8253 -1.3115 0.1423 32 1 3.9181 -1.3471 1.9197 33 1 1.6013 -1.7790 1.1110 34 1 1.6938 -0.2823 2.0705 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219056240.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:02 Heat of formation + Delta-G solvation = -36.923640 kcal Electronic energy + Delta-G solvation = -15027.590800 eV Core-core repulsion = 12574.532172 eV Total energy + Delta-G solvation = -2453.058628 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.07249 -36.44796 -34.46059 -32.22586 -30.77894 -29.56577 -27.37902 -24.67891 -23.46748 -22.80978 -20.30934 -19.54716 -17.35332 -15.76104 -15.19711 -14.88445 -14.79045 -14.68162 -14.63850 -13.60426 -13.54786 -13.43476 -12.71722 -12.40726 -12.08262 -11.83568 -11.53978 -11.09878 -11.09090 -10.81620 -10.78456 -10.57129 -10.35543 -9.74393 -9.15245 -8.64047 -8.45533 -8.32102 -7.74317 -6.12085 -4.23824 3.46892 3.50452 3.64393 3.96046 4.32228 4.52270 5.02977 5.05742 5.19783 5.26202 5.36348 5.47112 5.58667 5.60654 5.67101 5.74550 5.86150 5.93972 6.03184 6.08928 6.14759 6.21662 6.42163 6.62443 7.00643 7.02986 7.30057 7.41888 7.61243 7.72312 8.30069 8.84402 9.11432 9.52165 10.98404 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.055050 B = 0.007532 C = 0.007142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.505309 B = 3716.507772 C = 3919.450528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.547 5.547 3 C 0.058 3.942 4 C 0.057 3.943 5 N -0.533 5.533 6 C 0.041 3.959 7 C 0.201 3.799 8 H 0.057 0.943 9 O -0.576 6.576 10 C -0.564 4.564 11 H 0.072 0.928 12 C 0.082 3.918 13 N -0.894 5.894 14 Si 0.916 3.084 15 H -0.279 1.279 16 H -0.307 1.307 17 H -0.268 1.268 18 C 0.056 3.944 19 C 0.059 3.941 20 H 0.024 0.976 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.042 0.958 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.037 0.963 27 H 0.067 0.933 28 H 0.036 0.964 29 H 0.358 0.642 30 H 0.265 0.735 31 H 0.035 0.965 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.327 -5.848 -2.270 16.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.272 5.272 3 C -0.070 4.070 4 C -0.071 4.071 5 N -0.258 5.258 6 C -0.086 4.086 7 C 0.143 3.857 8 H 0.075 0.925 9 O -0.381 6.381 10 C -0.602 4.602 11 H 0.090 0.910 12 C -0.123 4.123 13 N -0.532 5.532 14 Si 0.746 3.254 15 H -0.204 1.204 16 H -0.235 1.235 17 H -0.193 1.193 18 C -0.072 4.072 19 C -0.069 4.069 20 H 0.043 0.957 21 H 0.084 0.916 22 H 0.084 0.916 23 H 0.061 0.939 24 H 0.093 0.907 25 H 0.101 0.899 26 H 0.055 0.945 27 H 0.085 0.915 28 H 0.054 0.946 29 H 0.204 0.796 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -15.471 -5.244 -2.525 16.530 hybrid contribution 0.008 0.233 0.473 0.527 sum -15.463 -5.011 -2.053 16.383 Atomic orbital electron populations 1.22325 0.87687 1.01840 1.00369 1.62173 1.07398 1.14504 1.43143 1.22183 0.95309 0.88757 1.00750 1.22150 0.93391 0.99567 0.92036 1.62179 1.09311 1.12169 1.42105 1.22827 0.84396 1.01421 0.99978 1.19832 0.93329 0.91417 0.81074 0.92533 1.86369 1.77559 1.54429 1.19784 1.21567 0.90169 1.02031 1.46395 0.90969 1.25014 0.94682 0.99034 0.93525 1.69963 1.06765 1.29674 1.46760 0.86200 0.79268 0.80071 0.79833 1.20449 1.23502 1.19298 1.22137 0.93719 0.90803 1.00564 1.22160 0.95204 0.97782 0.91804 0.95747 0.91579 0.91623 0.93930 0.90721 0.89917 0.94503 0.91452 0.94575 0.79627 0.92547 0.94685 0.90570 0.90862 0.94023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.60 60.07 0.58 0.85 16 2 N -0.55 -7.25 4.97 -242.75 -1.21 -8.46 16 3 C 0.06 0.82 5.62 -3.76 -0.02 0.80 16 4 C 0.06 0.95 5.43 -3.77 -0.02 0.92 16 5 N -0.53 -9.46 4.56 -234.48 -1.07 -10.53 16 6 C 0.04 0.82 4.59 -3.83 -0.02 0.81 16 7 C 0.20 4.79 2.38 -27.88 -0.07 4.73 16 8 H 0.06 1.42 5.85 -51.93 -0.30 1.12 16 9 O -0.58 -13.53 10.95 -35.23 -0.39 -13.91 16 10 C -0.56 -15.76 9.34 -34.44 -0.32 -16.08 16 11 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 12 C 0.08 2.38 5.47 -17.82 -0.10 2.28 16 13 N -0.89 -27.38 13.96 55.43 0.77 -26.61 16 14 Si 0.92 23.60 26.18 -169.99 -4.45 19.15 16 15 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 16 H -0.31 -7.82 7.11 56.52 0.40 -7.41 16 17 H -0.27 -6.87 6.54 56.52 0.37 -6.50 16 18 C 0.06 0.84 5.57 -3.77 -0.02 0.82 16 19 C 0.06 0.77 5.62 -3.77 -0.02 0.75 16 20 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 21 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 25 H 0.08 1.47 6.75 -51.93 -0.35 1.11 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 1.31 7.84 -51.93 -0.41 0.90 16 28 H 0.04 0.74 8.00 -51.93 -0.42 0.32 16 29 H 0.36 7.46 9.04 45.56 0.41 7.87 16 30 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 1.06 8.00 -51.93 -0.42 0.65 16 33 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 270.00 15.07 4.07 4.07 Total: -1.00 -31.21 270.00 -7.15 -38.35 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -4.87 Total: 2.06 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -0.01 Total: -4.13 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: -1.50 Total: -45.59 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.39 Total: -13.91 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -4.45 Total: 19.15 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.21 -7.15 -38.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219056240.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.431 kcal (2) G-P(sol) polarization free energy of solvation -31.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds