Wall clock time and date at job start Mon Mar 30 2020 03:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46959 * 111.00258 * 2 1 4 4 C 1.53052 * 109.36369 * 183.19125 * 3 2 1 5 5 N 1.46954 * 109.36458 * 301.59694 * 4 3 2 6 6 C 1.46893 * 111.00160 * 183.19278 * 5 4 3 7 7 C 1.52994 * 109.47375 * 75.75631 * 6 5 4 8 8 H 1.09004 * 109.47252 * 302.90150 * 7 6 5 9 9 O 1.42898 * 109.47042 * 62.89775 * 7 6 5 10 10 C 1.50702 * 109.47417 * 182.89728 * 7 6 5 11 11 H 1.07998 * 119.99679 * 0.02562 * 10 7 6 12 12 C 1.37877 * 120.00123 * 179.97438 * 10 7 6 13 13 N 1.31519 * 119.99951 * 180.02562 * 12 10 7 14 14 Si 1.86801 * 119.99993 * 0.02562 * 12 10 7 15 15 H 1.48497 * 109.47056 * 89.99908 * 14 12 10 16 16 H 1.48502 * 109.46927 * 209.99679 * 14 12 10 17 17 H 1.48491 * 109.47258 * 329.99613 * 14 12 10 18 18 C 1.46952 * 110.88082 * 59.31974 * 5 4 3 19 19 C 1.46954 * 111.00056 * 123.80032 * 2 1 3 20 20 H 1.09002 * 109.46864 * 296.20688 * 1 2 3 21 21 H 1.09002 * 109.46808 * 56.19761 * 1 2 3 22 22 H 1.08996 * 109.47392 * 176.20281 * 1 2 3 23 23 H 1.08994 * 109.49069 * 63.21976 * 3 2 1 24 24 H 1.09007 * 109.48712 * 303.15614 * 3 2 1 25 25 H 1.09002 * 109.48372 * 181.63053 * 4 3 2 26 26 H 1.08994 * 109.48790 * 61.56444 * 4 3 2 27 27 H 1.08996 * 109.47248 * 195.76314 * 6 5 4 28 28 H 1.08997 * 109.46900 * 315.75779 * 6 5 4 29 29 H 0.96700 * 113.99730 * 60.00554 * 9 7 6 30 30 H 0.96991 * 119.99730 * 180.02562 * 13 12 10 31 31 H 1.09006 * 109.48688 * 60.64607 * 18 5 4 32 32 H 1.08995 * 109.49113 * 180.69017 * 18 5 4 33 33 H 1.09007 * 109.48934 * 56.84049 * 19 2 1 34 34 H 1.09000 * 109.50327 * 296.78818 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5235 1.3290 -0.0804 5 7 4.0502 0.5658 1.0597 6 6 5.5191 0.5658 1.0597 7 6 6.0292 1.9250 1.5425 8 1 5.6240 2.7120 0.9064 9 8 5.6093 2.1395 2.8915 10 6 7.5345 1.9496 1.4751 11 1 8.0734 1.0826 1.1226 12 6 8.2236 3.0793 1.8623 13 7 9.5372 3.1009 1.8030 14 14 7.2913 4.5791 2.4713 15 1 7.1115 4.4865 3.9424 16 1 8.0598 5.8066 2.1428 17 1 5.9617 4.6365 1.8127 18 6 3.5235 -0.8061 1.0597 19 6 1.9957 -0.7632 1.1400 20 1 -0.3633 0.4538 0.9221 21 1 -0.3633 0.5717 -0.8540 22 1 -0.3634 -1.0254 -0.0681 23 1 1.6939 1.8774 0.9173 24 1 1.6014 1.9129 -0.8603 25 1 3.9179 2.3448 -0.0513 26 1 3.8253 0.8478 -1.0106 27 1 5.8824 -0.2164 1.7262 28 1 5.8824 0.3795 0.0491 29 1 5.9338 1.4752 3.5147 30 1 10.0220 3.8955 2.0757 31 1 3.8253 -1.3115 0.1423 32 1 3.9181 -1.3471 1.9197 33 1 1.6013 -1.7790 1.1110 34 1 1.6938 -0.2823 2.0705 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219056240.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:01 Heat of formation + Delta-G solvation = -63.232024 kcal Electronic energy + Delta-G solvation = -15028.731617 eV Core-core repulsion = 12574.532172 eV Total energy + Delta-G solvation = -2454.199445 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.30432 -38.11581 -35.87721 -34.43578 -31.93889 -31.13455 -28.91795 -26.21724 -24.67902 -24.10908 -22.10103 -20.75131 -19.41237 -17.09619 -16.79696 -16.56955 -16.35476 -15.98920 -15.76906 -15.20359 -15.02644 -14.91594 -14.62283 -13.54628 -13.42000 -13.13536 -13.04544 -12.81026 -12.72120 -12.32781 -12.23853 -11.94860 -11.70669 -11.67752 -11.11910 -10.88197 -10.35819 -9.37837 -9.15553 -8.37604 -6.52300 1.40067 1.43206 1.58583 2.37653 2.92947 2.98378 3.00808 3.91517 4.01322 4.06505 4.11389 4.27309 4.37701 4.46943 4.53871 4.60321 4.64190 4.70843 4.82483 4.90216 4.92833 4.99051 5.01590 5.09314 5.44008 5.44880 5.98546 5.99280 6.07280 6.19977 6.24798 6.60773 7.19883 7.34634 8.76661 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.055050 B = 0.007532 C = 0.007142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.505309 B = 3716.507772 C = 3919.450528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.557 5.557 3 C 0.066 3.934 4 C 0.055 3.945 5 N -0.541 5.541 6 C 0.055 3.945 7 C 0.210 3.790 8 H 0.047 0.953 9 O -0.579 6.579 10 C -0.565 4.565 11 H 0.041 0.959 12 C 0.032 3.968 13 N -0.937 5.937 14 Si 0.976 3.024 15 H -0.275 1.275 16 H -0.302 1.302 17 H -0.265 1.265 18 C 0.055 3.945 19 C 0.063 3.937 20 H 0.025 0.975 21 H 0.076 0.924 22 H 0.081 0.919 23 H 0.033 0.967 24 H 0.093 0.907 25 H 0.065 0.935 26 H 0.034 0.966 27 H 0.072 0.928 28 H 0.027 0.973 29 H 0.371 0.629 30 H 0.269 0.731 31 H 0.033 0.967 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.609 -6.127 -2.090 18.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.283 5.283 3 C -0.063 4.063 4 C -0.074 4.074 5 N -0.266 5.266 6 C -0.073 4.073 7 C 0.152 3.848 8 H 0.064 0.936 9 O -0.386 6.386 10 C -0.603 4.603 11 H 0.059 0.941 12 C -0.168 4.168 13 N -0.576 5.576 14 Si 0.804 3.196 15 H -0.201 1.201 16 H -0.230 1.230 17 H -0.190 1.190 18 C -0.073 4.073 19 C -0.065 4.065 20 H 0.044 0.956 21 H 0.095 0.905 22 H 0.099 0.901 23 H 0.051 0.949 24 H 0.111 0.889 25 H 0.084 0.916 26 H 0.053 0.947 27 H 0.090 0.910 28 H 0.045 0.955 29 H 0.218 0.782 30 H 0.078 0.922 31 H 0.051 0.949 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -17.774 -5.542 -2.344 18.765 hybrid contribution 0.721 0.238 0.394 0.855 sum -17.053 -5.304 -1.950 17.965 Atomic orbital electron populations 1.22397 0.85645 1.03142 1.00922 1.62198 1.09256 1.13664 1.43146 1.22092 0.93345 0.89711 1.01121 1.22174 0.95302 0.98382 0.91526 1.62120 1.07454 1.14215 1.42818 1.22487 0.86376 0.99139 0.99300 1.19590 0.90598 0.93294 0.81357 0.93566 1.86305 1.77344 1.55231 1.19703 1.21879 0.92478 1.00752 1.45241 0.94071 1.25782 0.95272 1.01814 0.93935 1.70066 1.08277 1.30746 1.48523 0.85258 0.78035 0.77042 0.79275 1.20054 1.22979 1.18995 1.22237 0.95188 0.89009 1.00861 1.22152 0.93662 0.99147 0.91522 0.95600 0.90526 0.90063 0.94890 0.88870 0.91616 0.94741 0.90955 0.95519 0.78194 0.92240 0.94885 0.89696 0.88347 0.94684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.60 127.69 1.23 1.69 16 2 N -0.56 -13.22 4.97 -921.91 -4.58 -17.80 16 3 C 0.07 1.72 5.62 86.31 0.49 2.20 16 4 C 0.05 1.75 5.43 86.31 0.47 2.22 16 5 N -0.54 -18.52 4.56 -895.77 -4.08 -22.60 16 6 C 0.06 2.18 4.59 86.30 0.40 2.58 16 7 C 0.21 9.91 2.38 29.85 0.07 9.98 16 8 H 0.05 2.30 5.85 -2.39 -0.01 2.29 16 9 O -0.58 -26.36 10.95 -148.98 -1.63 -27.99 16 10 C -0.57 -31.99 9.34 25.60 0.24 -31.75 16 11 H 0.04 2.53 7.99 -2.91 -0.02 2.51 16 12 C 0.03 1.88 5.47 84.65 0.46 2.34 16 13 N -0.94 -58.16 13.96 21.45 0.30 -57.86 16 14 Si 0.98 48.50 26.18 68.60 1.80 50.30 16 15 H -0.27 -13.43 7.11 99.48 0.71 -12.72 16 16 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 17 H -0.27 -12.96 6.54 99.48 0.65 -12.31 16 18 C 0.06 1.53 5.57 86.31 0.48 2.01 16 19 C 0.06 1.48 5.62 86.31 0.49 1.96 16 20 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 21 H 0.08 1.18 8.13 -2.39 -0.02 1.16 16 22 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.09 2.08 8.13 -2.38 -0.02 2.06 16 25 H 0.07 2.30 6.75 -2.39 -0.02 2.29 16 26 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.07 2.76 7.84 -2.39 -0.02 2.74 16 28 H 0.03 1.10 8.00 -2.39 -0.02 1.08 16 29 H 0.37 14.89 9.04 -74.06 -0.67 14.22 16 30 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 31 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.08 2.19 8.00 -2.39 -0.02 2.17 16 33 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -65.65 270.00 -3.54 -69.19 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.34 Total: 13.53 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: 4.31 Total: -6.77 kcal Atomic # 7 Polarization: -89.90 SS G_CDS: -8.36 Total: -98.26 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -1.63 Total: -27.99 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 1.80 Total: 50.30 kcal Total: -65.65 -3.54 -69.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219056240.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.961 kcal (2) G-P(sol) polarization free energy of solvation -65.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds