Wall clock time and date at job start Mon Mar 30 2020 03:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42894 * 114.00322 * 2 1 4 4 C 1.53005 * 109.47286 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.46952 * 64.64353 * 4 3 2 6 6 C 1.46954 * 111.00097 * 199.50634 * 5 4 3 7 7 C 1.53046 * 109.36598 * 176.81024 * 6 5 4 8 8 N 1.46959 * 109.36324 * 58.40265 * 7 6 5 9 9 C 1.46954 * 110.89721 * 300.68846 * 8 7 6 10 10 H 1.09001 * 109.47184 * 299.33091 * 9 8 7 11 11 C 1.50706 * 109.50631 * 179.26527 * 9 8 7 12 12 H 1.08001 * 119.99762 * 240.09323 * 11 9 8 13 13 C 1.37878 * 119.99889 * 60.10324 * 11 9 8 14 14 N 1.31514 * 120.00034 * 179.97438 * 13 11 9 15 15 Si 1.86803 * 119.99752 * 359.97438 * 13 11 9 16 16 H 1.48491 * 109.47213 * 90.00470 * 15 13 11 17 17 H 1.48503 * 109.46686 * 210.00244 * 15 13 11 18 18 H 1.48495 * 109.47194 * 329.99875 * 15 13 11 19 19 C 1.46961 * 110.99841 * 75.70401 * 5 4 3 20 20 H 1.09005 * 109.47120 * 300.00102 * 1 2 3 21 21 H 1.08997 * 109.47457 * 59.99777 * 1 2 3 22 22 H 1.08997 * 109.47795 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47526 * 59.99857 * 3 2 1 24 24 H 1.09004 * 109.47166 * 299.99972 * 3 2 1 25 25 H 1.08992 * 109.46998 * 304.64656 * 4 3 2 26 26 H 1.08995 * 109.46750 * 184.64047 * 4 3 2 27 27 H 1.09000 * 109.48576 * 296.78013 * 6 5 4 28 28 H 1.08999 * 109.48804 * 56.84017 * 6 5 4 29 29 H 1.08998 * 109.48756 * 178.36714 * 7 6 5 30 30 H 1.08994 * 109.48915 * 298.40985 * 7 6 5 31 31 H 1.00896 * 111.00011 * 64.54643 * 8 7 6 32 32 H 0.96999 * 119.99937 * 180.02562 * 14 13 11 33 33 H 1.08998 * 109.49184 * 303.15424 * 19 5 4 34 34 H 1.08999 * 109.48717 * 63.20627 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9773 0.5543 -1.2507 6 6 5.3327 0.0035 -1.1130 7 6 5.7238 -0.7117 -2.4083 8 7 5.6552 0.2369 -3.5286 9 6 4.2999 0.7881 -3.6665 10 1 3.5966 -0.0213 -3.8619 11 6 4.2694 1.7686 -4.8106 12 1 3.9980 2.7986 -4.6320 13 6 4.5878 1.3506 -6.0853 14 7 4.5607 2.2060 -7.0839 15 14 5.0577 -0.4308 -6.3940 16 1 3.8379 -1.2171 -6.7086 17 1 6.0017 -0.5026 -7.5382 18 1 5.7071 -0.9888 -5.1808 19 6 3.9086 1.5030 -2.3710 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.6887 1.8464 0.8899 24 1 1.6886 1.8463 -0.8900 25 1 3.8512 0.5736 0.8463 26 1 3.9785 2.1769 0.0838 27 1 6.0361 0.8131 -0.9180 28 1 5.3549 -0.7052 -0.2852 29 1 6.7399 -1.0960 -2.3190 30 1 5.0369 -1.5385 -2.5888 31 1 6.3357 0.9739 -3.4205 32 1 4.7843 1.9119 -7.9807 33 1 2.8925 1.8873 -2.4603 34 1 4.5956 2.3297 -2.1900 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219057811.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:09 Heat of formation + Delta-G solvation = -52.109604 kcal Electronic energy + Delta-G solvation = -15110.572933 eV Core-core repulsion = 12656.855793 eV Total energy + Delta-G solvation = -2453.717141 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.23245 -38.56383 -35.74211 -34.34177 -32.08388 -30.52842 -27.38081 -27.12436 -25.70037 -23.15780 -22.51556 -21.16252 -18.92193 -17.43442 -17.33704 -16.50716 -16.13516 -15.87531 -15.67340 -15.39760 -15.33512 -14.54713 -14.44412 -14.04224 -13.59607 -12.92836 -12.77562 -12.63202 -12.59036 -12.22398 -12.12176 -11.88601 -11.69462 -11.46071 -11.13140 -10.71272 -10.52148 -9.25033 -8.64385 -8.24550 -6.37203 1.52338 1.57699 1.95915 2.62515 2.88632 3.01618 3.12336 3.79740 4.03652 4.17549 4.26435 4.32487 4.40943 4.45970 4.53499 4.57145 4.58092 4.64138 4.68256 4.84983 4.87870 4.90053 5.01646 5.19912 5.23636 5.62787 6.07112 6.10557 6.25921 6.38375 6.43727 6.79430 6.88488 7.41634 8.88648 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.034104 B = 0.009018 C = 0.008276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.832050 B = 3104.264232 C = 3382.554760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.067 3.933 4 C 0.055 3.945 5 N -0.542 5.542 6 C 0.027 3.973 7 C 0.054 3.946 8 N -0.688 5.688 9 C 0.200 3.800 10 H 0.028 0.972 11 C -0.528 4.528 12 H 0.029 0.971 13 C 0.029 3.971 14 N -0.950 5.950 15 Si 0.927 3.073 16 H -0.304 1.304 17 H -0.312 1.312 18 H -0.158 1.158 19 C 0.054 3.946 20 H 0.055 0.945 21 H 0.034 0.966 22 H 0.093 0.907 23 H 0.074 0.926 24 H 0.034 0.966 25 H 0.092 0.908 26 H 0.054 0.946 27 H 0.031 0.969 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.063 0.937 31 H 0.332 0.668 32 H 0.263 0.737 33 H 0.057 0.943 34 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.896 -5.209 16.879 17.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.320 6.320 3 C -0.009 4.009 4 C -0.073 4.073 5 N -0.267 5.267 6 C -0.103 4.103 7 C -0.076 4.076 8 N -0.318 5.318 9 C 0.092 3.908 10 H 0.046 0.954 11 C -0.566 4.566 12 H 0.048 0.952 13 C -0.170 4.170 14 N -0.589 5.589 15 Si 0.752 3.248 16 H -0.232 1.232 17 H -0.240 1.240 18 H -0.078 1.078 19 C -0.076 4.076 20 H 0.074 0.926 21 H 0.053 0.947 22 H 0.112 0.888 23 H 0.092 0.908 24 H 0.052 0.948 25 H 0.110 0.890 26 H 0.072 0.928 27 H 0.049 0.951 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.081 0.919 31 H 0.150 0.850 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -2.158 -6.238 16.167 17.463 hybrid contribution 0.132 1.461 -0.043 1.468 sum -2.026 -4.777 16.125 16.939 Atomic orbital electron populations 1.22862 0.80402 1.03454 1.00271 1.87925 1.20543 1.28180 1.95393 1.22586 0.93450 0.84788 1.00123 1.22199 0.94093 0.98549 0.92427 1.62090 1.25103 1.35516 1.04028 1.22832 0.88181 0.98832 1.00422 1.22160 1.01788 0.95864 0.87750 1.61493 1.07122 1.20965 1.42226 1.19207 0.87615 0.92930 0.91085 0.95408 1.21129 1.47281 0.95765 0.92453 0.95222 1.25857 0.93107 1.02682 0.95321 1.70095 1.50283 1.37704 1.00863 0.86316 0.77785 0.80506 0.80162 1.23206 1.24008 1.07819 1.22511 0.99810 0.93031 0.92241 0.92601 0.94740 0.88840 0.90794 0.94769 0.88977 0.92775 0.95091 0.88927 0.88797 0.91880 0.84993 0.92882 0.92487 0.96430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 113.37 1.25 1.82 16 2 O -0.40 -11.65 10.64 -148.98 -1.59 -13.24 16 3 C 0.07 1.76 6.13 71.98 0.44 2.20 16 4 C 0.06 1.47 5.39 86.30 0.46 1.93 16 5 N -0.54 -18.11 4.58 -895.71 -4.11 -22.22 16 6 C 0.03 0.77 5.56 86.31 0.48 1.25 16 7 C 0.05 1.73 6.71 86.31 0.58 2.31 16 8 N -0.69 -27.98 3.18 -495.01 -1.57 -29.55 16 9 C 0.20 9.37 1.95 44.18 0.09 9.46 16 10 H 0.03 1.41 7.57 -2.39 -0.02 1.39 16 11 C -0.53 -30.35 9.27 25.60 0.24 -30.11 16 12 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 13 C 0.03 1.73 5.47 84.65 0.46 2.20 16 14 N -0.95 -60.86 13.96 21.45 0.30 -60.56 16 15 Si 0.93 45.85 26.94 68.60 1.85 47.70 16 16 H -0.30 -15.37 7.11 99.48 0.71 -14.66 16 17 H -0.31 -15.70 7.11 99.48 0.71 -14.99 16 18 H -0.16 -6.97 5.16 99.48 0.51 -6.46 16 19 C 0.05 2.17 4.65 86.31 0.40 2.57 16 20 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 21 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 22 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.03 1.00 6.74 -2.39 -0.02 0.99 16 25 H 0.09 2.14 7.85 -2.39 -0.02 2.12 16 26 H 0.05 1.35 8.00 -2.39 -0.02 1.33 16 27 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.09 2.25 8.00 -2.39 -0.02 2.23 16 29 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.33 13.35 8.79 -89.70 -0.79 12.57 16 32 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 33 H 0.06 2.40 6.72 -2.39 -0.02 2.38 16 34 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -68.66 269.90 -0.64 -69.29 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.08 Total: 14.96 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 4.40 Total: -6.38 kcal Atomic # 7 Polarization: -106.95 SS G_CDS: -5.38 Total: -112.33 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -1.59 Total: -13.24 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.85 Total: 47.70 kcal Total: -68.66 -0.64 -69.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219057811.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.183 kcal (2) G-P(sol) polarization free energy of solvation -68.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds