Wall clock time and date at job start Mon Mar 30 2020 03:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42902 * 114.00112 * 2 1 4 4 C 1.52999 * 109.47249 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.47407 * 62.58982 * 4 3 2 6 6 C 1.46951 * 111.00125 * 52.36719 * 5 4 3 7 7 C 1.53045 * 109.36791 * 183.18992 * 6 5 4 8 8 N 1.46964 * 109.36419 * 301.60298 * 7 6 5 9 9 C 1.46951 * 110.88220 * 59.31535 * 8 7 6 10 10 H 1.09001 * 109.48917 * 60.65015 * 9 8 7 11 11 C 1.50699 * 109.48897 * 180.71636 * 9 8 7 12 12 H 1.07999 * 120.00080 * 119.89907 * 11 9 8 13 13 C 1.37872 * 119.99893 * 299.88898 * 11 9 8 14 14 N 1.31512 * 120.00280 * 180.02562 * 13 11 9 15 15 Si 1.86805 * 120.00116 * 0.02562 * 13 11 9 16 16 H 1.48500 * 109.47239 * 89.99493 * 15 13 11 17 17 H 1.48503 * 109.46983 * 210.00151 * 15 13 11 18 18 H 1.48503 * 109.46770 * 329.99640 * 15 13 11 19 19 C 1.46955 * 110.99984 * 176.17127 * 5 4 3 20 20 H 1.09005 * 109.47315 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.47072 * 60.00468 * 1 2 3 22 22 H 1.09001 * 109.47508 * 300.00179 * 1 2 3 23 23 H 1.09004 * 109.46389 * 299.99587 * 3 2 1 24 24 H 1.08992 * 109.47400 * 59.99821 * 3 2 1 25 25 H 1.08997 * 109.47324 * 182.58961 * 4 3 2 26 26 H 1.08999 * 109.46745 * 302.58680 * 4 3 2 27 27 H 1.08997 * 109.48832 * 303.16019 * 6 5 4 28 28 H 1.09001 * 109.48917 * 63.22222 * 6 5 4 29 29 H 1.08993 * 109.49414 * 181.63470 * 7 6 5 30 30 H 1.08997 * 109.50525 * 61.57579 * 7 6 5 31 31 H 1.00906 * 110.99717 * 295.45184 * 8 7 6 32 32 H 0.97002 * 120.00541 * 180.02562 * 14 13 11 33 33 H 1.09000 * 109.48845 * 296.77700 * 19 5 4 34 34 H 1.09004 * 109.49131 * 56.82103 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9728 0.5106 -1.2304 6 6 3.4080 1.1648 -2.4190 7 6 3.8213 0.3874 -3.6708 8 7 5.2879 0.3343 -3.7493 9 6 5.8527 -0.3199 -2.5608 10 1 5.4776 -1.3412 -2.4950 11 6 7.3559 -0.3417 -2.6655 12 1 7.9567 0.1496 -1.9144 13 6 7.9642 -0.9889 -3.7200 14 7 9.2760 -1.0084 -3.8111 15 14 6.9250 -1.8383 -5.0193 16 1 6.6152 -0.8794 -6.1101 17 1 7.6739 -2.9944 -5.5742 18 1 5.6596 -2.3164 -4.4063 19 6 5.4392 0.4575 -1.3089 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 0.5138 0.8899 23 1 1.6885 1.8463 -0.8901 24 1 1.6886 1.8464 0.8899 25 1 3.9787 2.1793 0.0458 26 1 3.8542 0.6041 0.8650 27 1 2.3207 1.1806 -2.3432 28 1 3.7831 2.1861 -2.4847 29 1 3.4277 0.8872 -4.5558 30 1 3.4231 -0.6258 -3.6180 31 1 5.6770 1.2570 -3.8734 32 1 9.7039 -1.4635 -4.5532 33 1 5.8375 1.4708 -1.3620 34 1 5.8330 -0.0420 -0.4236 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219057880.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:12 Heat of formation + Delta-G solvation = -31.470407 kcal Electronic energy + Delta-G solvation = -15085.350869 eV Core-core repulsion = 12632.528711 eV Total energy + Delta-G solvation = -2452.822158 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.94368 -37.46584 -34.20331 -32.32673 -30.38627 -29.31232 -26.31873 -25.63799 -23.84596 -22.43175 -20.58652 -19.55973 -16.96038 -16.42847 -16.17818 -15.27009 -14.77049 -14.32138 -14.15318 -13.97847 -13.56418 -13.37443 -12.64578 -12.46055 -12.23211 -11.69386 -11.53053 -11.23119 -10.90034 -10.79955 -10.62808 -10.26311 -9.93714 -9.61549 -9.60880 -9.05972 -8.48699 -7.88762 -7.28914 -5.97727 -4.07640 3.62431 3.65667 3.79922 3.81718 4.30264 4.69971 4.99811 5.10180 5.12934 5.27480 5.29596 5.32442 5.50614 5.54795 5.59665 5.71713 5.80674 5.88976 5.99247 6.10745 6.19067 6.26931 6.58955 6.67129 7.04923 7.17186 7.53591 7.56202 7.75264 8.21384 8.26547 8.69727 9.00765 9.66475 11.11640 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.049965 B = 0.007986 C = 0.007497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.253361 B = 3505.205566 C = 3734.045053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.370 6.370 3 C 0.062 3.938 4 C 0.055 3.945 5 N -0.529 5.529 6 C 0.020 3.980 7 C 0.055 3.945 8 N -0.685 5.685 9 C 0.187 3.813 10 H 0.051 0.949 11 C -0.525 4.525 12 H 0.070 0.930 13 C 0.082 3.918 14 N -0.901 5.901 15 Si 0.933 3.067 16 H -0.281 1.281 17 H -0.318 1.318 18 H -0.270 1.270 19 C 0.040 3.960 20 H 0.084 0.916 21 H 0.037 0.963 22 H 0.035 0.965 23 H 0.049 0.951 24 H 0.047 0.953 25 H 0.042 0.958 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.022 0.978 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.333 0.667 32 H 0.263 0.737 33 H 0.024 0.976 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.896 5.325 5.285 17.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.288 6.288 3 C -0.015 4.015 4 C -0.073 4.073 5 N -0.254 5.254 6 C -0.110 4.110 7 C -0.075 4.075 8 N -0.315 5.315 9 C 0.080 3.920 10 H 0.069 0.931 11 C -0.563 4.563 12 H 0.088 0.912 13 C -0.122 4.122 14 N -0.538 5.538 15 Si 0.765 3.235 16 H -0.207 1.207 17 H -0.247 1.247 18 H -0.195 1.195 19 C -0.089 4.089 20 H 0.102 0.898 21 H 0.055 0.945 22 H 0.053 0.947 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.100 0.900 27 H 0.087 0.913 28 H 0.041 0.959 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.151 0.849 32 H 0.073 0.927 33 H 0.042 0.958 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.797 4.043 4.821 17.004 hybrid contribution -0.518 1.498 0.040 1.586 sum -16.315 5.541 4.862 17.903 Atomic orbital electron populations 1.22715 0.82081 1.02544 0.99325 1.88066 1.18524 1.27110 1.95149 1.22658 0.94076 0.85220 0.99533 1.22133 0.92720 0.97441 0.95011 1.62178 1.10703 1.51977 1.00513 1.22875 0.99489 0.95631 0.92979 1.22055 0.91266 1.00149 0.94038 1.61145 1.02560 1.25026 1.42810 1.19701 0.95219 0.94181 0.82914 0.93113 1.20868 0.88221 1.36296 1.10928 0.91157 1.25016 0.94747 0.94703 0.97742 1.69961 1.09162 1.43154 1.31565 0.85904 0.79335 0.77161 0.81135 1.20690 1.24741 1.19475 1.22839 0.84253 0.99290 1.02478 0.89781 0.94480 0.94661 0.93260 0.93516 0.94045 0.90050 0.91317 0.95944 0.91897 0.90977 0.84925 0.92747 0.95778 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.37 -5.34 10.61 -35.23 -0.37 -5.71 16 3 C 0.06 0.78 5.58 37.16 0.21 0.99 16 4 C 0.06 0.81 5.53 -3.82 -0.02 0.79 16 5 N -0.53 -9.55 4.73 -234.47 -1.11 -10.66 16 6 C 0.02 0.33 5.12 -3.77 -0.02 0.31 16 7 C 0.06 1.01 6.72 -3.77 -0.03 0.99 16 8 N -0.68 -15.06 4.11 -107.82 -0.44 -15.51 16 9 C 0.19 4.50 1.94 -68.81 -0.13 4.37 16 10 H 0.05 1.33 7.20 -51.93 -0.37 0.95 16 11 C -0.52 -14.82 9.27 -34.44 -0.32 -15.13 16 12 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 13 C 0.08 2.41 5.47 -17.82 -0.10 2.31 16 14 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 15 Si 0.93 24.29 26.04 -169.99 -4.43 19.87 16 16 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 17 H -0.32 -8.34 7.11 56.52 0.40 -7.93 16 18 H -0.27 -6.97 6.54 56.52 0.37 -6.60 16 19 C 0.04 0.83 4.83 -3.77 -0.02 0.81 16 20 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 21 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 22 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 23 H 0.05 0.59 6.09 -51.93 -0.32 0.28 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.07 1.02 5.95 -51.93 -0.31 0.71 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.33 7.14 8.79 -39.29 -0.35 6.80 16 32 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 LS Contribution 269.55 15.07 4.06 4.06 Total: -1.00 -31.62 269.55 -6.41 -38.03 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -5.58 Total: 0.23 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: 0.69 Total: -3.14 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: -0.78 Total: -53.34 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.37 Total: -5.71 kcal Atomic # 14 Polarization: 24.29 SS G_CDS: -4.43 Total: 19.87 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -31.62 -6.41 -38.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219057880.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.557 kcal (2) G-P(sol) polarization free energy of solvation -31.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds