Wall clock time and date at job start Mon Mar 30 2020 03:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42902 * 114.00112 * 2 1 4 4 C 1.52999 * 109.47249 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.47407 * 62.58982 * 4 3 2 6 6 C 1.46951 * 111.00125 * 52.36719 * 5 4 3 7 7 C 1.53045 * 109.36791 * 183.18992 * 6 5 4 8 8 N 1.46964 * 109.36419 * 301.60298 * 7 6 5 9 9 C 1.46951 * 110.88220 * 59.31535 * 8 7 6 10 10 H 1.09001 * 109.48917 * 60.65015 * 9 8 7 11 11 C 1.50699 * 109.48897 * 180.71636 * 9 8 7 12 12 H 1.07999 * 120.00080 * 119.89907 * 11 9 8 13 13 C 1.37872 * 119.99893 * 299.88898 * 11 9 8 14 14 N 1.31512 * 120.00280 * 180.02562 * 13 11 9 15 15 Si 1.86805 * 120.00116 * 0.02562 * 13 11 9 16 16 H 1.48500 * 109.47239 * 89.99493 * 15 13 11 17 17 H 1.48503 * 109.46983 * 210.00151 * 15 13 11 18 18 H 1.48503 * 109.46770 * 329.99640 * 15 13 11 19 19 C 1.46955 * 110.99984 * 176.17127 * 5 4 3 20 20 H 1.09005 * 109.47315 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.47072 * 60.00468 * 1 2 3 22 22 H 1.09001 * 109.47508 * 300.00179 * 1 2 3 23 23 H 1.09004 * 109.46389 * 299.99587 * 3 2 1 24 24 H 1.08992 * 109.47400 * 59.99821 * 3 2 1 25 25 H 1.08997 * 109.47324 * 182.58961 * 4 3 2 26 26 H 1.08999 * 109.46745 * 302.58680 * 4 3 2 27 27 H 1.08997 * 109.48832 * 303.16019 * 6 5 4 28 28 H 1.09001 * 109.48917 * 63.22222 * 6 5 4 29 29 H 1.08993 * 109.49414 * 181.63470 * 7 6 5 30 30 H 1.08997 * 109.50525 * 61.57579 * 7 6 5 31 31 H 1.00906 * 110.99717 * 295.45184 * 8 7 6 32 32 H 0.97002 * 120.00541 * 180.02562 * 14 13 11 33 33 H 1.09000 * 109.48845 * 296.77700 * 19 5 4 34 34 H 1.09004 * 109.49131 * 56.82103 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9728 0.5106 -1.2304 6 6 3.4080 1.1648 -2.4190 7 6 3.8213 0.3874 -3.6708 8 7 5.2879 0.3343 -3.7493 9 6 5.8527 -0.3199 -2.5608 10 1 5.4776 -1.3412 -2.4950 11 6 7.3559 -0.3417 -2.6655 12 1 7.9567 0.1496 -1.9144 13 6 7.9642 -0.9889 -3.7200 14 7 9.2760 -1.0084 -3.8111 15 14 6.9250 -1.8383 -5.0193 16 1 6.6152 -0.8794 -6.1101 17 1 7.6739 -2.9944 -5.5742 18 1 5.6596 -2.3164 -4.4063 19 6 5.4392 0.4575 -1.3089 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 0.5138 0.8899 23 1 1.6885 1.8463 -0.8901 24 1 1.6886 1.8464 0.8899 25 1 3.9787 2.1793 0.0458 26 1 3.8542 0.6041 0.8650 27 1 2.3207 1.1806 -2.3432 28 1 3.7831 2.1861 -2.4847 29 1 3.4277 0.8872 -4.5558 30 1 3.4231 -0.6258 -3.6180 31 1 5.6770 1.2570 -3.8734 32 1 9.7039 -1.4635 -4.5532 33 1 5.8375 1.4708 -1.3620 34 1 5.8330 -0.0420 -0.4236 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219057880.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:12 Heat of formation + Delta-G solvation = -56.933470 kcal Electronic energy + Delta-G solvation = -15086.455030 eV Core-core repulsion = 12632.528711 eV Total energy + Delta-G solvation = -2453.926319 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.34677 -38.58669 -35.78756 -34.34672 -32.12931 -30.51386 -27.57552 -27.12309 -25.37228 -23.88107 -22.09622 -21.18939 -18.97824 -17.51844 -17.32722 -16.68668 -16.12291 -15.91164 -15.54249 -15.51256 -15.11354 -15.01778 -14.39465 -14.00441 -13.49621 -12.94356 -12.91107 -12.74522 -12.53468 -12.25139 -12.06769 -11.89259 -11.71505 -11.65349 -11.11962 -10.74672 -10.51652 -9.32297 -8.95143 -8.25229 -6.38300 1.50889 1.56859 1.72717 2.53215 2.84179 3.01885 3.07168 3.74789 3.96838 4.12043 4.23504 4.32094 4.34013 4.38035 4.53533 4.54424 4.59511 4.63265 4.66017 4.81565 4.89766 4.91090 4.96674 5.13515 5.20978 5.61318 6.05542 6.09079 6.22439 6.38656 6.39451 6.77092 6.82855 7.39226 8.87405 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.049965 B = 0.007986 C = 0.007497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.253361 B = 3505.205566 C = 3734.045053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.066 3.934 4 C 0.052 3.948 5 N -0.542 5.542 6 C 0.026 3.974 7 C 0.055 3.945 8 N -0.697 5.697 9 C 0.196 3.804 10 H 0.030 0.970 11 C -0.525 4.525 12 H 0.036 0.964 13 C 0.032 3.968 14 N -0.946 5.946 15 Si 0.996 3.004 16 H -0.273 1.273 17 H -0.321 1.321 18 H -0.267 1.267 19 C 0.053 3.947 20 H 0.088 0.912 21 H 0.047 0.953 22 H 0.052 0.948 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.032 0.968 29 H 0.094 0.906 30 H 0.059 0.941 31 H 0.336 0.664 32 H 0.266 0.734 33 H 0.021 0.979 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.665 6.196 5.037 20.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C -0.010 4.010 4 C -0.075 4.075 5 N -0.268 5.268 6 C -0.103 4.103 7 C -0.075 4.075 8 N -0.328 5.328 9 C 0.087 3.913 10 H 0.048 0.952 11 C -0.564 4.564 12 H 0.054 0.946 13 C -0.168 4.168 14 N -0.585 5.585 15 Si 0.826 3.174 16 H -0.198 1.198 17 H -0.251 1.251 18 H -0.192 1.192 19 C -0.076 4.076 20 H 0.107 0.893 21 H 0.066 0.934 22 H 0.071 0.929 23 H 0.078 0.922 24 H 0.091 0.909 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.112 0.888 28 H 0.050 0.950 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.154 0.846 32 H 0.074 0.926 33 H 0.039 0.961 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.598 4.932 4.586 19.780 hybrid contribution 0.302 1.262 0.201 1.313 sum -18.295 6.194 4.787 19.900 Atomic orbital electron populations 1.22885 0.80093 1.03398 1.00676 1.88013 1.20808 1.28190 1.95460 1.22660 0.92081 0.85020 1.01279 1.22227 0.94739 0.97539 0.93042 1.62109 1.08416 1.53693 1.02538 1.22840 1.00812 0.95412 0.91259 1.22152 0.88497 1.00315 0.96496 1.60840 1.05161 1.25212 1.41568 1.19349 0.92413 0.93989 0.85522 0.95240 1.21132 0.90627 1.35069 1.09577 0.94603 1.25787 0.95547 0.95576 0.99874 1.70072 1.10827 1.44912 1.32732 0.84897 0.77618 0.76080 0.78767 1.19826 1.25080 1.19229 1.22482 0.86638 0.98257 1.00230 0.89333 0.93425 0.92926 0.92233 0.90917 0.92802 0.90772 0.88821 0.94983 0.88809 0.92212 0.84560 0.92583 0.96130 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 113.37 1.25 1.69 16 2 O -0.41 -10.57 10.61 -148.98 -1.58 -12.15 16 3 C 0.07 1.44 5.58 71.98 0.40 1.84 16 4 C 0.05 1.42 5.53 86.30 0.48 1.90 16 5 N -0.54 -18.56 4.73 -895.73 -4.23 -22.79 16 6 C 0.03 0.77 5.12 86.31 0.44 1.21 16 7 C 0.06 1.85 6.72 86.31 0.58 2.43 16 8 N -0.70 -29.55 4.11 -495.02 -2.03 -31.58 16 9 C 0.20 9.39 1.94 44.18 0.09 9.48 16 10 H 0.03 1.55 7.20 -2.39 -0.02 1.53 16 11 C -0.53 -30.36 9.27 25.60 0.24 -30.13 16 12 H 0.04 2.26 7.99 -2.91 -0.02 2.24 16 13 C 0.03 1.88 5.47 84.65 0.46 2.34 16 14 N -0.95 -60.01 13.96 21.45 0.30 -59.71 16 15 Si 1.00 50.47 26.04 68.60 1.79 52.25 16 16 H -0.27 -13.35 7.11 99.48 0.71 -12.64 16 17 H -0.32 -16.27 7.11 99.48 0.71 -15.56 16 18 H -0.27 -13.30 6.54 99.48 0.65 -12.65 16 19 C 0.05 2.20 4.83 86.31 0.42 2.61 16 20 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 21 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 22 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 23 H 0.06 1.17 6.09 -2.38 -0.01 1.15 16 24 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.09 2.36 5.95 -2.39 -0.01 2.35 16 28 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.06 2.17 8.14 -2.39 -0.02 2.16 16 31 H 0.34 13.92 8.79 -89.69 -0.79 13.13 16 32 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 33 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 2.58 8.14 -2.38 -0.02 2.56 16 Total: -1.00 -68.38 269.55 -1.19 -69.56 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.22 Total: 11.05 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: 4.35 Total: -6.62 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -5.97 Total: -114.09 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: -1.58 Total: -12.15 kcal Atomic # 14 Polarization: 50.47 SS G_CDS: 1.79 Total: 52.25 kcal Total: -68.38 -1.19 -69.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219057880.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.631 kcal (2) G-P(sol) polarization free energy of solvation -68.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds