Wall clock time and date at job start Mon Mar 30 2020 03:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00201 * 2 1 4 4 C 1.52997 * 109.47312 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.47227 * 67.35169 * 4 3 2 6 6 C 1.46957 * 110.99681 * 286.50817 * 5 4 3 7 7 C 1.53056 * 109.36458 * 176.80700 * 6 5 4 8 8 N 1.46964 * 109.36124 * 58.40292 * 7 6 5 9 9 C 1.46957 * 110.87673 * 300.67761 * 8 7 6 10 10 C 1.46951 * 111.00364 * 162.71068 * 5 4 3 11 11 H 1.08995 * 109.51139 * 63.20817 * 10 5 4 12 12 C 1.50706 * 109.48428 * 303.15273 * 10 5 4 13 13 H 1.07990 * 120.00262 * 0.11190 * 12 10 5 14 14 C 1.37884 * 119.99778 * 180.10809 * 12 10 5 15 15 N 1.31513 * 119.99707 * 180.02562 * 14 12 10 16 16 Si 1.86805 * 119.99940 * 0.02562 * 14 12 10 17 17 H 1.48506 * 109.47014 * 89.99857 * 16 14 12 18 18 H 1.48498 * 109.46842 * 209.99824 * 16 14 12 19 19 H 1.48496 * 109.46963 * 330.00078 * 16 14 12 20 20 H 1.08996 * 109.47278 * 59.99867 * 1 2 3 21 21 H 1.09001 * 109.47097 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46965 * 299.99432 * 1 2 3 23 23 H 1.09003 * 109.46825 * 60.00038 * 3 2 1 24 24 H 1.08998 * 109.47362 * 300.00129 * 3 2 1 25 25 H 1.08998 * 109.47199 * 307.34914 * 4 3 2 26 26 H 1.09003 * 109.47164 * 187.34734 * 4 3 2 27 27 H 1.08999 * 109.48866 * 296.77761 * 6 5 4 28 28 H 1.08998 * 109.49144 * 56.82543 * 6 5 4 29 29 H 1.08998 * 109.49273 * 298.43925 * 7 6 5 30 30 H 1.09003 * 109.48792 * 178.36704 * 7 6 5 31 31 H 1.00899 * 110.99962 * 176.81166 * 8 7 6 32 32 H 1.09007 * 109.48447 * 179.28938 * 9 8 7 33 33 H 1.08997 * 109.49090 * 299.32765 * 9 8 7 34 34 H 0.97000 * 119.99403 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9820 0.6141 -1.2772 6 6 3.6757 -0.8214 -1.3487 7 6 4.0831 -1.3596 -2.7224 8 7 5.5174 -1.1188 -2.9341 9 6 5.8236 0.3167 -2.8627 10 6 5.4161 0.8547 -1.4890 11 1 5.9890 0.3452 -0.7143 12 6 5.6920 2.3350 -1.4268 13 1 4.8835 3.0279 -1.2461 14 6 6.9766 2.8048 -1.6006 15 7 7.2174 4.0965 -1.5458 16 14 8.3750 1.6064 -1.9137 17 1 8.5224 1.3888 -3.3754 18 1 9.6374 2.1650 -1.3665 19 1 8.0765 0.3128 -1.2484 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 1.6886 1.8463 0.8900 24 1 1.6886 1.8464 -0.8899 25 1 3.8481 0.5346 0.8178 26 1 3.9781 2.1720 0.1321 27 1 4.2285 -1.3503 -0.5723 28 1 2.6064 -0.9730 -1.2011 29 1 3.5106 -0.8497 -3.4971 30 1 3.8836 -2.4302 -2.7673 31 1 5.8241 -1.5107 -3.8119 32 1 6.8930 0.4682 -3.0100 33 1 5.2711 0.8455 -3.6393 34 1 8.1211 4.4270 -1.6684 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219059792.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:06 Heat of formation + Delta-G solvation = -23.680017 kcal Electronic energy + Delta-G solvation = -15368.356752 eV Core-core repulsion = 12915.872411 eV Total energy + Delta-G solvation = -2452.484341 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.60175 -37.22919 -33.84495 -32.80189 -30.24023 -29.27484 -26.32484 -25.35151 -23.89218 -21.73956 -20.96099 -18.81983 -16.90934 -16.39634 -15.99465 -15.43924 -14.88936 -14.20168 -13.97203 -13.82423 -13.75206 -13.07189 -12.71755 -12.32749 -11.79339 -11.56659 -11.40155 -11.12748 -10.97284 -10.62491 -10.41106 -10.14685 -10.05331 -9.48320 -9.16105 -9.06077 -8.56973 -7.86197 -7.27053 -6.10632 -4.10255 3.26088 3.38716 3.46158 4.10306 4.38678 4.80529 4.89444 5.23560 5.37389 5.45868 5.65369 5.71865 5.73775 5.77619 5.84148 5.98316 6.03224 6.30702 6.35457 6.46584 6.57763 6.60660 6.64499 6.87954 7.24231 7.40024 7.45563 7.73201 7.89775 8.01524 8.17127 8.65721 8.94504 9.51455 11.01442 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.035098 B = 0.010672 C = 0.008606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.567452 B = 2623.011093 C = 3252.632284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.387 6.387 3 C 0.066 3.934 4 C 0.061 3.939 5 N -0.524 5.524 6 C 0.050 3.950 7 C 0.064 3.936 8 N -0.700 5.700 9 C 0.058 3.942 10 C 0.190 3.810 11 H 0.006 0.994 12 C -0.511 4.511 13 H 0.084 0.916 14 C 0.072 3.928 15 N -0.897 5.897 16 Si 0.879 3.121 17 H -0.279 1.279 18 H -0.296 1.296 19 H -0.259 1.259 20 H 0.038 0.962 21 H 0.078 0.922 22 H 0.035 0.965 23 H 0.045 0.955 24 H 0.056 0.944 25 H 0.029 0.971 26 H 0.110 0.890 27 H 0.025 0.975 28 H 0.094 0.906 29 H 0.031 0.969 30 H 0.064 0.936 31 H 0.327 0.673 32 H 0.060 0.940 33 H 0.037 0.963 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.155 -8.303 0.602 12.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.307 6.307 3 C -0.010 4.010 4 C -0.067 4.067 5 N -0.249 5.249 6 C -0.079 4.079 7 C -0.066 4.066 8 N -0.330 5.330 9 C -0.071 4.071 10 C 0.082 3.918 11 H 0.024 0.976 12 C -0.549 4.549 13 H 0.102 0.898 14 C -0.130 4.130 15 N -0.534 5.534 16 Si 0.709 3.291 17 H -0.206 1.206 18 H -0.223 1.223 19 H -0.184 1.184 20 H 0.056 0.944 21 H 0.096 0.904 22 H 0.053 0.947 23 H 0.063 0.937 24 H 0.075 0.925 25 H 0.047 0.953 26 H 0.128 0.872 27 H 0.043 0.957 28 H 0.112 0.888 29 H 0.049 0.951 30 H 0.083 0.917 31 H 0.143 0.857 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.992 -8.201 0.882 12.202 hybrid contribution 0.760 -0.379 -0.536 1.004 sum -8.232 -8.580 0.346 11.895 Atomic orbital electron populations 1.22661 0.82493 1.01938 0.99550 1.87920 1.18581 1.29081 1.95093 1.22759 0.94702 0.83855 0.99696 1.22144 0.91568 1.02371 0.90648 1.62013 1.19132 1.12040 1.31728 1.22395 1.01348 0.89030 0.95083 1.21938 0.88347 0.98821 0.97513 1.60675 1.16662 1.16849 1.38836 1.22551 0.99111 0.85166 1.00262 1.19697 0.84002 0.96489 0.91614 0.97610 1.20998 0.94878 0.89618 1.49414 0.89806 1.24934 0.98482 0.94979 0.94637 1.69877 1.21200 1.12470 1.49903 0.86964 0.81610 0.82105 0.78392 1.20646 1.22306 1.18386 0.94378 0.90357 0.94675 0.93725 0.92536 0.95295 0.87198 0.95719 0.88771 0.95107 0.91742 0.85669 0.92260 0.94452 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.39 -6.10 7.73 -35.23 -0.27 -6.37 16 3 C 0.07 1.09 6.23 37.16 0.23 1.32 16 4 C 0.06 1.21 5.33 -3.83 -0.02 1.19 16 5 N -0.52 -11.44 4.46 -227.88 -1.02 -12.45 16 6 C 0.05 0.96 5.28 -3.76 -0.02 0.94 16 7 C 0.06 1.13 6.72 -3.76 -0.03 1.11 16 8 N -0.70 -13.77 6.90 -113.62 -0.78 -14.55 16 9 C 0.06 1.33 5.46 -3.77 -0.02 1.31 16 10 C 0.19 4.69 1.54 -68.81 -0.11 4.59 16 11 H 0.01 0.17 7.20 -51.93 -0.37 -0.21 16 12 C -0.51 -14.21 8.27 -34.43 -0.28 -14.49 16 13 H 0.08 2.49 6.85 -52.49 -0.36 2.13 16 14 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 15 N -0.90 -27.00 13.96 55.43 0.77 -26.23 16 16 Si 0.88 22.05 24.36 -169.99 -4.14 17.91 16 17 H -0.28 -6.81 6.88 56.52 0.39 -6.42 16 18 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 19 H -0.26 -6.48 6.53 56.52 0.37 -6.11 16 20 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 21 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.03 0.57 8.03 -51.93 -0.42 0.16 16 26 H 0.11 2.39 5.87 -51.93 -0.30 2.08 16 27 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 1.70 5.26 -51.93 -0.27 1.43 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.33 5.50 8.90 -39.29 -0.35 5.15 16 32 H 0.06 1.42 3.31 -51.93 -0.17 1.25 16 33 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 260.23 15.07 3.92 3.92 Total: -1.00 -30.52 260.23 -5.98 -36.51 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -5.24 Total: 1.88 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 0.77 Total: -0.60 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -1.03 Total: -53.24 kcal Atomic # 8 Polarization: -6.10 SS G_CDS: -0.27 Total: -6.37 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.14 Total: 17.91 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.52 -5.98 -36.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219059792.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.827 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds