Wall clock time and date at job start Mon Mar 30 2020 03:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00201 * 2 1 4 4 C 1.52997 * 109.47312 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.47227 * 67.35169 * 4 3 2 6 6 C 1.46957 * 110.99681 * 286.50817 * 5 4 3 7 7 C 1.53056 * 109.36458 * 176.80700 * 6 5 4 8 8 N 1.46964 * 109.36124 * 58.40292 * 7 6 5 9 9 C 1.46957 * 110.87673 * 300.67761 * 8 7 6 10 10 C 1.46951 * 111.00364 * 162.71068 * 5 4 3 11 11 H 1.08995 * 109.51139 * 63.20817 * 10 5 4 12 12 C 1.50706 * 109.48428 * 303.15273 * 10 5 4 13 13 H 1.07990 * 120.00262 * 0.11190 * 12 10 5 14 14 C 1.37884 * 119.99778 * 180.10809 * 12 10 5 15 15 N 1.31513 * 119.99707 * 180.02562 * 14 12 10 16 16 Si 1.86805 * 119.99940 * 0.02562 * 14 12 10 17 17 H 1.48506 * 109.47014 * 89.99857 * 16 14 12 18 18 H 1.48498 * 109.46842 * 209.99824 * 16 14 12 19 19 H 1.48496 * 109.46963 * 330.00078 * 16 14 12 20 20 H 1.08996 * 109.47278 * 59.99867 * 1 2 3 21 21 H 1.09001 * 109.47097 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46965 * 299.99432 * 1 2 3 23 23 H 1.09003 * 109.46825 * 60.00038 * 3 2 1 24 24 H 1.08998 * 109.47362 * 300.00129 * 3 2 1 25 25 H 1.08998 * 109.47199 * 307.34914 * 4 3 2 26 26 H 1.09003 * 109.47164 * 187.34734 * 4 3 2 27 27 H 1.08999 * 109.48866 * 296.77761 * 6 5 4 28 28 H 1.08998 * 109.49144 * 56.82543 * 6 5 4 29 29 H 1.08998 * 109.49273 * 298.43925 * 7 6 5 30 30 H 1.09003 * 109.48792 * 178.36704 * 7 6 5 31 31 H 1.00899 * 110.99962 * 176.81166 * 8 7 6 32 32 H 1.09007 * 109.48447 * 179.28938 * 9 8 7 33 33 H 1.08997 * 109.49090 * 299.32765 * 9 8 7 34 34 H 0.97000 * 119.99403 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9820 0.6141 -1.2772 6 6 3.6757 -0.8214 -1.3487 7 6 4.0831 -1.3596 -2.7224 8 7 5.5174 -1.1188 -2.9341 9 6 5.8236 0.3167 -2.8627 10 6 5.4161 0.8547 -1.4890 11 1 5.9890 0.3452 -0.7143 12 6 5.6920 2.3350 -1.4268 13 1 4.8835 3.0279 -1.2461 14 6 6.9766 2.8048 -1.6006 15 7 7.2174 4.0965 -1.5458 16 14 8.3750 1.6064 -1.9137 17 1 8.5224 1.3888 -3.3754 18 1 9.6374 2.1650 -1.3665 19 1 8.0765 0.3128 -1.2484 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 1.6886 1.8463 0.8900 24 1 1.6886 1.8464 -0.8899 25 1 3.8481 0.5346 0.8178 26 1 3.9781 2.1720 0.1321 27 1 4.2285 -1.3503 -0.5723 28 1 2.6064 -0.9730 -1.2011 29 1 3.5106 -0.8497 -3.4971 30 1 3.8836 -2.4302 -2.7673 31 1 5.8241 -1.5107 -3.8119 32 1 6.8930 0.4682 -3.0100 33 1 5.2711 0.8455 -3.6393 34 1 8.1211 4.4270 -1.6684 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219059792.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:06 Heat of formation + Delta-G solvation = -49.341332 kcal Electronic energy + Delta-G solvation = -15369.469510 eV Core-core repulsion = 12915.872411 eV Total energy + Delta-G solvation = -2453.597099 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.21028 -38.53216 -35.46321 -34.85690 -32.12139 -30.72156 -27.63069 -27.00450 -25.50298 -23.52180 -22.51757 -20.56592 -18.98318 -17.99432 -17.30940 -16.74941 -16.28684 -16.04206 -15.68474 -15.47711 -15.32440 -14.81355 -14.31251 -14.06501 -13.32119 -13.09489 -12.92186 -12.60767 -12.50802 -12.45238 -12.12940 -11.96678 -11.69710 -11.24658 -11.09179 -10.73986 -10.40108 -9.44990 -9.02075 -8.32234 -6.35780 1.26167 1.34805 1.46459 2.28671 2.91292 3.01005 3.18612 3.39850 4.12761 4.18919 4.31462 4.37372 4.45670 4.50490 4.57720 4.60729 4.63244 4.72147 4.83022 4.90212 4.90986 5.00865 5.06018 5.24613 5.36078 5.51503 5.98214 6.02528 6.27876 6.34112 6.57906 6.69141 6.72011 7.29677 8.83136 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.035098 B = 0.010672 C = 0.008606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.567452 B = 2623.011093 C = 3252.632284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.080 3.920 4 C 0.060 3.940 5 N -0.533 5.533 6 C 0.051 3.949 7 C 0.064 3.936 8 N -0.702 5.702 9 C 0.065 3.935 10 C 0.195 3.805 11 H -0.016 1.016 12 C -0.510 4.510 13 H 0.051 0.949 14 C 0.021 3.979 15 N -0.939 5.939 16 Si 0.940 3.060 17 H -0.264 1.264 18 H -0.293 1.293 19 H -0.258 1.258 20 H 0.043 0.957 21 H 0.099 0.901 22 H 0.049 0.951 23 H 0.067 0.933 24 H 0.051 0.949 25 H 0.025 0.975 26 H 0.081 0.919 27 H 0.013 0.987 28 H 0.111 0.889 29 H 0.034 0.966 30 H 0.102 0.898 31 H 0.348 0.652 32 H 0.051 0.949 33 H 0.028 0.972 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.032 -10.473 0.072 14.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C 0.003 3.997 4 C -0.068 4.068 5 N -0.258 5.258 6 C -0.077 4.077 7 C -0.065 4.065 8 N -0.334 5.334 9 C -0.065 4.065 10 C 0.086 3.914 11 H 0.001 0.999 12 C -0.549 4.549 13 H 0.069 0.931 14 C -0.177 4.177 15 N -0.579 5.579 16 Si 0.768 3.232 17 H -0.190 1.190 18 H -0.221 1.221 19 H -0.182 1.182 20 H 0.062 0.938 21 H 0.117 0.883 22 H 0.067 0.933 23 H 0.085 0.915 24 H 0.069 0.931 25 H 0.044 0.956 26 H 0.099 0.901 27 H 0.031 0.969 28 H 0.129 0.871 29 H 0.052 0.948 30 H 0.120 0.880 31 H 0.166 0.834 32 H 0.069 0.931 33 H 0.046 0.954 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.895 -10.395 0.339 14.356 hybrid contribution 0.888 0.292 -0.313 0.986 sum -9.007 -10.103 0.026 13.535 Atomic orbital electron populations 1.22899 0.80000 1.03671 1.00536 1.87839 1.21145 1.28238 1.95263 1.22479 0.92050 0.84621 1.00528 1.22094 0.94297 1.00508 0.89936 1.62049 1.16988 1.14077 1.32689 1.22494 1.02237 0.87057 0.95883 1.22052 0.87077 1.01038 0.96346 1.60582 1.18144 1.14278 1.40363 1.22245 0.98372 0.87392 0.98455 1.19477 0.85781 0.94021 0.92127 0.99876 1.21175 0.94116 0.91138 1.48438 0.93058 1.25671 1.00994 0.96437 0.94636 1.70000 1.21955 1.14332 1.51624 0.85978 0.78415 0.79791 0.79042 1.18986 1.22082 1.18244 0.93819 0.88301 0.93251 0.91490 0.93084 0.95646 0.90110 0.96879 0.87095 0.94818 0.88010 0.83370 0.93080 0.95402 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 11.01 113.37 1.25 1.75 16 2 O -0.41 -11.83 7.73 -148.98 -1.15 -12.98 16 3 C 0.08 2.54 6.23 71.98 0.45 2.99 16 4 C 0.06 2.41 5.33 86.30 0.46 2.87 16 5 N -0.53 -23.13 4.46 -874.89 -3.91 -27.04 16 6 C 0.05 1.87 5.28 86.31 0.46 2.33 16 7 C 0.06 2.07 6.72 86.31 0.58 2.65 16 8 N -0.70 -25.70 6.90 -513.39 -3.54 -29.25 16 9 C 0.06 2.91 5.46 86.31 0.47 3.38 16 10 C 0.19 9.66 1.54 44.18 0.07 9.73 16 11 H -0.02 -0.87 7.20 -2.39 -0.02 -0.89 16 12 C -0.51 -29.24 8.27 25.60 0.21 -29.03 16 13 H 0.05 3.21 6.85 -2.92 -0.02 3.19 16 14 C 0.02 1.23 5.45 84.66 0.46 1.69 16 15 N -0.94 -58.04 13.96 21.45 0.30 -57.74 16 16 Si 0.94 45.81 24.36 68.60 1.67 47.48 16 17 H -0.26 -12.12 6.88 99.48 0.68 -11.44 16 18 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 19 H -0.26 -12.42 6.53 99.48 0.65 -11.77 16 20 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 21 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.03 1.02 8.03 -2.39 -0.02 1.00 16 26 H 0.08 3.69 5.87 -2.39 -0.01 3.68 16 27 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.11 3.72 5.26 -2.39 -0.01 3.70 16 29 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.35 10.49 8.90 -89.69 -0.80 9.69 16 32 H 0.05 2.37 3.31 -2.38 -0.01 2.36 16 33 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.27 15.50 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -66.15 260.23 -2.02 -68.17 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.21 Total: 12.98 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: 4.40 Total: -1.63 kcal Atomic # 7 Polarization: -106.87 SS G_CDS: -7.15 Total: -114.02 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -1.15 Total: -12.98 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.67 Total: 47.48 kcal Total: -66.15 -2.02 -68.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219059792.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.832 kcal (2) G-P(sol) polarization free energy of solvation -66.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds