Wall clock time and date at job start Mon Mar 30 2020 03:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47122 * 2 1 4 4 C 1.50707 * 109.46801 * 119.99666 * 2 1 3 5 5 H 1.08007 * 119.99643 * 120.00274 * 4 2 1 6 6 C 1.37875 * 119.99831 * 300.00210 * 4 2 1 7 7 N 1.31514 * 120.00390 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99532 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47000 * 90.00264 * 8 6 4 10 10 H 1.48506 * 109.46926 * 209.99758 * 8 6 4 11 11 H 1.48493 * 109.47356 * 329.99820 * 8 6 4 12 12 N 1.46892 * 109.47439 * 239.99522 * 2 1 3 13 13 C 1.47009 * 111.00400 * 296.37091 * 12 2 1 14 14 C 1.53098 * 109.26122 * 182.39014 * 13 12 2 15 15 O 1.43013 * 109.26113 * 303.15107 * 14 13 12 16 16 C 1.43013 * 113.73873 * 58.66632 * 15 14 13 17 17 H 1.08996 * 109.54452 * 61.28820 * 16 15 14 18 18 C 1.52998 * 109.50853 * 181.40004 * 16 15 14 19 19 N 1.46905 * 109.46978 * 299.78366 * 18 16 15 20 20 C 1.47018 * 110.99825 * 60.00350 * 12 2 1 21 21 H 1.08997 * 109.47122 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47461 * 300.00399 * 1 2 3 23 23 H 1.09007 * 109.46794 * 60.00443 * 1 2 3 24 24 H 0.96999 * 119.99645 * 179.97438 * 7 6 4 25 25 H 1.09007 * 109.50334 * 302.32675 * 13 12 2 26 26 H 1.08996 * 109.50877 * 62.45183 * 13 12 2 27 27 H 1.09005 * 109.50576 * 63.08548 * 14 13 12 28 28 H 1.09003 * 109.50642 * 183.16930 * 14 13 12 29 29 H 1.09002 * 109.47288 * 179.78267 * 18 16 15 30 30 H 1.08995 * 109.47151 * 59.78327 * 18 16 15 31 31 H 1.00901 * 110.99869 * 180.02562 * 19 18 16 32 32 H 1.00896 * 110.99543 * 303.95346 * 19 18 16 33 33 H 1.08997 * 109.50950 * 57.67284 * 20 12 2 34 34 H 1.08997 * 109.50584 * 297.54375 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3211 -1.1203 4.0081 9 1 3.6294 -0.5458 4.4125 10 1 1.3428 -0.9491 5.1121 11 1 2.4855 -2.5661 3.7121 12 7 2.0197 -0.6925 -1.1993 13 6 1.6206 -2.1074 -1.1906 14 6 2.2006 -2.8033 -2.4248 15 8 1.7572 -2.1230 -3.6020 16 6 2.1291 -0.7427 -3.6438 17 1 3.2157 -0.6574 -3.6334 18 6 1.5787 -0.1037 -4.9204 19 7 2.1364 -0.7920 -6.0923 20 6 1.5484 -0.0259 -2.4220 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 0.7087 1.1615 3.4844 25 1 2.0018 -2.5875 -0.2892 26 1 0.5332 -2.1790 -1.2098 27 1 3.2894 -2.7787 -2.3785 28 1 1.8609 -3.8387 -2.4522 29 1 1.8593 0.9492 -4.9498 30 1 0.4923 -0.1907 -4.9309 31 1 1.7882 -0.3879 -6.9487 32 1 3.1451 -0.7813 -6.0717 33 1 1.8768 1.0134 -2.4196 34 1 0.4598 -0.0642 -2.4608 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229010003.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:37 Heat of formation + Delta-G solvation = -37.989803 kcal Electronic energy + Delta-G solvation = -15215.717636 eV Core-core repulsion = 12762.612776 eV Total energy + Delta-G solvation = -2453.104860 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.17996 -35.93284 -34.45036 -32.59274 -30.41757 -29.22311 -26.20946 -25.42456 -23.78735 -22.25629 -20.64575 -19.01094 -16.40711 -16.33329 -15.68498 -15.06903 -14.65351 -14.42614 -14.09739 -14.03899 -13.46972 -12.86187 -12.52887 -12.36993 -11.76894 -11.46878 -11.06453 -10.84352 -10.79485 -10.76147 -10.46476 -10.25153 -9.97694 -9.70635 -9.04195 -8.79283 -8.63843 -8.41933 -7.20728 -6.04298 -4.08748 3.29272 3.35667 3.38657 4.14165 4.36512 4.53603 4.96891 5.26988 5.32113 5.33998 5.58573 5.60835 5.78118 5.84175 5.97381 6.06510 6.12922 6.39467 6.58427 6.62744 6.79340 6.85390 7.09831 7.10692 7.42070 7.46241 7.68078 7.71627 7.77592 8.05219 8.33211 8.54465 8.96509 9.56544 11.02844 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.056605 B = 0.007694 C = 0.007149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.535280 B = 3638.362034 C = 3915.929150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.210 3.790 3 H 0.040 0.960 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.529 5.529 13 C 0.025 3.975 14 C 0.061 3.939 15 O -0.372 6.372 16 C 0.098 3.902 17 H 0.057 0.943 18 C 0.070 3.930 19 N -0.841 5.841 20 C 0.022 3.978 21 H 0.029 0.971 22 H 0.088 0.912 23 H 0.009 0.991 24 H 0.261 0.739 25 H 0.092 0.908 26 H 0.034 0.966 27 H 0.050 0.950 28 H 0.087 0.913 29 H 0.040 0.960 30 H 0.077 0.923 31 H 0.337 0.663 32 H 0.338 0.662 33 H 0.072 0.928 34 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.470 -1.964 -11.085 11.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.104 3.896 3 H 0.058 0.942 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.254 5.254 13 C -0.104 4.104 14 C -0.016 4.016 15 O -0.291 6.291 16 C 0.039 3.961 17 H 0.075 0.925 18 C -0.061 4.061 19 N -0.371 5.371 20 C -0.107 4.107 21 H 0.048 0.952 22 H 0.107 0.893 23 H 0.028 0.972 24 H 0.070 0.930 25 H 0.111 0.889 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.105 0.895 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.091 0.909 34 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.424 -2.560 -10.785 11.175 hybrid contribution -0.101 0.703 0.977 1.208 sum 1.323 -1.857 -9.808 10.069 Atomic orbital electron populations 1.22390 1.00780 0.99342 1.00562 1.19314 0.89855 0.94600 0.85790 0.94189 1.21126 1.30796 1.12578 0.89732 0.91888 1.24933 0.95137 0.95112 0.99040 1.69887 1.36890 1.23026 1.23459 0.86508 0.78523 0.79981 0.82451 1.20659 1.21327 1.19919 1.62576 1.59048 1.01542 1.02226 1.22650 0.98290 0.90984 0.98434 1.22730 0.98494 0.95524 0.84877 1.87991 1.78609 1.21606 1.40865 1.22097 0.98026 0.82645 0.93328 0.92525 1.21786 1.00563 0.94305 0.89487 1.58566 1.12786 1.61625 1.04076 1.22653 0.98206 0.98530 0.91352 0.95226 0.89322 0.97208 0.92958 0.88938 0.94777 0.93208 0.89502 0.94231 0.90465 0.85111 0.84951 0.90947 0.94357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.20 8.27 37.16 0.31 -3.89 16 2 C 0.21 5.31 2.42 -68.87 -0.17 5.15 16 3 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 4 C -0.50 -13.68 7.90 -34.44 -0.27 -13.95 16 5 H 0.06 1.70 6.42 -52.48 -0.34 1.36 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -25.35 11.32 55.43 0.63 -24.72 16 8 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.53 -11.55 4.75 -227.72 -1.08 -12.63 16 13 C 0.02 0.50 4.98 -3.71 -0.02 0.49 16 14 C 0.06 1.05 7.01 37.21 0.26 1.31 16 15 O -0.37 -6.70 10.34 -35.23 -0.36 -7.06 16 16 C 0.10 1.60 3.01 -26.68 -0.08 1.52 16 17 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 18 C 0.07 0.92 6.48 -3.82 -0.02 0.90 16 19 N -0.84 -9.92 9.50 -10.37 -0.10 -10.02 16 20 C 0.02 0.41 4.48 -3.71 -0.02 0.40 16 21 H 0.03 0.71 6.54 -51.93 -0.34 0.37 16 22 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 23 H 0.01 0.20 6.46 -51.92 -0.34 -0.13 16 24 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 25 H 0.09 1.97 6.18 -51.92 -0.32 1.65 16 26 H 0.03 0.72 6.52 -51.93 -0.34 0.38 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.34 3.12 9.08 -39.29 -0.36 2.76 16 32 H 0.34 3.59 8.99 -39.29 -0.35 3.23 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.04 0.75 6.44 -51.93 -0.33 0.42 16 LS Contribution 264.62 15.07 3.99 3.99 Total: -1.00 -29.31 264.62 -7.18 -36.49 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -5.13 Total: 4.35 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -0.11 Total: -6.57 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.55 Total: -47.37 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.36 Total: -7.06 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.31 -7.18 -36.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229010003.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.495 kcal (2) G-P(sol) polarization free energy of solvation -29.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds