Wall clock time and date at job start Mon Mar 30 2020 03:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47122 * 2 1 4 4 C 1.50707 * 109.46801 * 119.99666 * 2 1 3 5 5 H 1.08007 * 119.99643 * 120.00274 * 4 2 1 6 6 C 1.37875 * 119.99831 * 300.00210 * 4 2 1 7 7 N 1.31514 * 120.00390 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99532 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47000 * 90.00264 * 8 6 4 10 10 H 1.48506 * 109.46926 * 209.99758 * 8 6 4 11 11 H 1.48493 * 109.47356 * 329.99820 * 8 6 4 12 12 N 1.46892 * 109.47439 * 239.99522 * 2 1 3 13 13 C 1.47009 * 111.00400 * 296.37091 * 12 2 1 14 14 C 1.53098 * 109.26122 * 182.39014 * 13 12 2 15 15 O 1.43013 * 109.26113 * 303.15107 * 14 13 12 16 16 C 1.43013 * 113.73873 * 58.66632 * 15 14 13 17 17 H 1.08996 * 109.54452 * 61.28820 * 16 15 14 18 18 C 1.52998 * 109.50853 * 181.40004 * 16 15 14 19 19 N 1.46905 * 109.46978 * 299.78366 * 18 16 15 20 20 C 1.47018 * 110.99825 * 60.00350 * 12 2 1 21 21 H 1.08997 * 109.47122 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47461 * 300.00399 * 1 2 3 23 23 H 1.09007 * 109.46794 * 60.00443 * 1 2 3 24 24 H 0.96999 * 119.99645 * 179.97438 * 7 6 4 25 25 H 1.09007 * 109.50334 * 302.32675 * 13 12 2 26 26 H 1.08996 * 109.50877 * 62.45183 * 13 12 2 27 27 H 1.09005 * 109.50576 * 63.08548 * 14 13 12 28 28 H 1.09003 * 109.50642 * 183.16930 * 14 13 12 29 29 H 1.09002 * 109.47288 * 179.78267 * 18 16 15 30 30 H 1.08995 * 109.47151 * 59.78327 * 18 16 15 31 31 H 1.00901 * 110.99869 * 180.02562 * 19 18 16 32 32 H 1.00896 * 110.99543 * 303.95346 * 19 18 16 33 33 H 1.08997 * 109.50950 * 57.67284 * 20 12 2 34 34 H 1.08997 * 109.50584 * 297.54375 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3211 -1.1203 4.0081 9 1 3.6294 -0.5458 4.4125 10 1 1.3428 -0.9491 5.1121 11 1 2.4855 -2.5661 3.7121 12 7 2.0197 -0.6925 -1.1993 13 6 1.6206 -2.1074 -1.1906 14 6 2.2006 -2.8033 -2.4248 15 8 1.7572 -2.1230 -3.6020 16 6 2.1291 -0.7427 -3.6438 17 1 3.2157 -0.6574 -3.6334 18 6 1.5787 -0.1037 -4.9204 19 7 2.1364 -0.7920 -6.0923 20 6 1.5484 -0.0259 -2.4220 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 0.7087 1.1615 3.4844 25 1 2.0018 -2.5875 -0.2892 26 1 0.5332 -2.1790 -1.2098 27 1 3.2894 -2.7787 -2.3785 28 1 1.8609 -3.8387 -2.4522 29 1 1.8593 0.9492 -4.9498 30 1 0.4923 -0.1907 -4.9309 31 1 1.7882 -0.3879 -6.9487 32 1 3.1451 -0.7813 -6.0717 33 1 1.8768 1.0134 -2.4196 34 1 0.4598 -0.0642 -2.4608 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229010003.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:37 Heat of formation + Delta-G solvation = -61.322561 kcal Electronic energy + Delta-G solvation = -15216.729421 eV Core-core repulsion = 12762.612776 eV Total energy + Delta-G solvation = -2454.116644 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.68622 -37.59799 -35.58034 -34.57199 -31.75138 -31.08805 -27.71330 -27.45300 -25.30208 -23.74903 -22.14407 -20.72990 -18.31577 -17.63293 -17.30244 -16.54053 -16.08934 -16.03489 -15.62485 -15.49373 -14.88363 -14.51872 -14.26266 -13.69338 -13.55984 -12.99783 -12.94543 -12.69241 -12.60659 -12.32775 -12.18425 -11.97080 -11.91591 -11.21877 -10.94338 -10.53007 -10.39772 -9.54274 -8.96654 -8.13541 -6.25083 1.42532 1.43003 1.53213 2.41149 2.85247 3.15056 3.18597 3.66969 4.06917 4.10362 4.24926 4.26099 4.37631 4.51521 4.59143 4.66166 4.68822 4.76540 4.84417 4.99562 5.07529 5.08069 5.16807 5.49531 5.66689 5.72672 6.10301 6.17959 6.37011 6.39037 6.65210 6.67437 6.87358 7.44305 8.92996 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.056605 B = 0.007694 C = 0.007149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.535280 B = 3638.362034 C = 3915.929150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.214 3.786 3 H 0.009 0.991 4 C -0.519 4.519 5 H 0.060 0.940 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.961 3.039 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.267 1.267 12 N -0.538 5.538 13 C 0.028 3.972 14 C 0.068 3.932 15 O -0.380 6.380 16 C 0.102 3.898 17 H 0.060 0.940 18 C 0.077 3.923 19 N -0.849 5.849 20 C 0.023 3.977 21 H 0.026 0.974 22 H 0.063 0.937 23 H 0.025 0.975 24 H 0.262 0.738 25 H 0.078 0.922 26 H 0.021 0.979 27 H 0.056 0.944 28 H 0.113 0.887 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.353 0.647 32 H 0.346 0.654 33 H 0.076 0.924 34 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.033 -2.763 -12.031 12.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.107 3.893 3 H 0.027 0.973 4 C -0.557 4.557 5 H 0.079 0.921 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.787 3.213 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.191 1.191 12 N -0.262 5.262 13 C -0.100 4.100 14 C -0.009 4.009 15 O -0.299 6.299 16 C 0.043 3.957 17 H 0.078 0.922 18 C -0.055 4.055 19 N -0.381 5.381 20 C -0.107 4.107 21 H 0.045 0.955 22 H 0.082 0.918 23 H 0.044 0.956 24 H 0.071 0.929 25 H 0.096 0.904 26 H 0.039 0.961 27 H 0.074 0.926 28 H 0.131 0.869 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.167 0.833 32 H 0.159 0.841 33 H 0.094 0.906 34 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 1.993 -3.363 -11.763 12.395 hybrid contribution -0.275 0.977 1.223 1.589 sum 1.718 -2.386 -10.540 10.942 Atomic orbital electron populations 1.22186 1.00433 0.98913 1.00051 1.19081 0.89981 0.93141 0.87101 0.97330 1.21396 1.30875 1.12648 0.90814 0.92140 1.25717 0.95282 0.95786 1.01939 1.70013 1.37753 1.24202 1.24103 0.85505 0.77948 0.79115 0.78754 1.20217 1.21023 1.19147 1.62476 1.59230 1.02348 1.02156 1.22645 0.97576 0.90203 0.99625 1.22738 0.98687 0.96296 0.83137 1.87995 1.78809 1.22330 1.40778 1.22171 0.98160 0.81817 0.93554 0.92222 1.21675 1.00092 0.95145 0.88578 1.58494 1.13494 1.61795 1.04287 1.22735 0.97777 0.99014 0.91128 0.95455 0.91839 0.95584 0.92916 0.90380 0.96054 0.92583 0.86940 0.92219 0.91073 0.83325 0.84091 0.90551 0.95228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.78 8.27 71.98 0.60 -7.18 16 2 C 0.21 10.98 2.42 44.17 0.11 11.09 16 3 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 4 C -0.52 -28.47 7.90 25.60 0.20 -28.26 16 5 H 0.06 3.28 6.42 -2.91 -0.02 3.26 16 6 C 0.01 0.63 5.30 84.65 0.45 1.08 16 7 N -0.92 -52.96 11.32 21.45 0.24 -52.72 16 8 Si 0.96 43.46 29.54 68.60 2.03 45.48 16 9 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 11 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 12 N -0.54 -23.39 4.75 -874.38 -4.15 -27.54 16 13 C 0.03 1.12 4.98 86.32 0.43 1.55 16 14 C 0.07 2.22 7.01 72.01 0.50 2.73 16 15 O -0.38 -12.87 10.34 -148.98 -1.54 -14.41 16 16 C 0.10 3.13 3.01 30.63 0.09 3.22 16 17 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 18 C 0.08 1.84 6.48 86.30 0.56 2.40 16 19 N -0.85 -17.70 9.50 -186.71 -1.77 -19.47 16 20 C 0.02 0.83 4.48 86.32 0.39 1.22 16 21 H 0.03 1.32 6.54 -2.39 -0.02 1.30 16 22 H 0.06 3.48 6.07 -2.39 -0.01 3.47 16 23 H 0.03 1.16 6.46 -2.38 -0.02 1.14 16 24 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 25 H 0.08 3.32 6.18 -2.38 -0.01 3.30 16 26 H 0.02 0.90 6.52 -2.39 -0.02 0.88 16 27 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 28 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.35 5.53 9.08 -89.69 -0.81 4.71 16 32 H 0.35 6.37 8.99 -89.70 -0.81 5.57 16 33 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.03 1.14 6.44 -2.39 -0.02 1.12 16 Total: -1.00 -61.83 264.62 -2.39 -64.22 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -0.52 Total: 16.60 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: 3.33 Total: -12.17 kcal Atomic # 7 Polarization: -94.05 SS G_CDS: -5.68 Total: -99.73 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -1.54 Total: -14.41 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -61.83 -2.39 -64.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229010003.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.895 kcal (2) G-P(sol) polarization free energy of solvation -61.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds