Wall clock time and date at job start Mon Mar 30 2020 03:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 H 1.07998 * 120.00129 * 240.00616 * 4 2 1 6 6 C 1.37880 * 119.99861 * 59.99898 * 4 2 1 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47094 * 90.00289 * 8 6 4 10 10 H 1.48505 * 109.47195 * 210.00171 * 8 6 4 11 11 H 1.48493 * 109.47449 * 330.00136 * 8 6 4 12 12 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 13 13 C 1.47010 * 111.00217 * 171.36730 * 12 2 1 14 14 C 1.53096 * 109.26223 * 182.39169 * 13 12 2 15 15 O 1.43016 * 109.25499 * 303.14990 * 14 13 12 16 16 C 1.43011 * 113.74162 * 58.67109 * 15 14 13 17 17 H 1.08998 * 109.50720 * 61.25887 * 16 15 14 18 18 C 1.53005 * 109.54544 * 181.37506 * 16 15 14 19 19 N 1.46897 * 109.46590 * 299.80097 * 18 16 15 20 20 C 1.47017 * 111.00014 * 294.99844 * 12 2 1 21 21 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 23 23 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 24 24 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 25 25 H 1.09001 * 109.50481 * 302.32782 * 13 12 2 26 26 H 1.09003 * 109.51043 * 62.45290 * 13 12 2 27 27 H 1.09000 * 109.50892 * 183.21980 * 14 13 12 28 28 H 1.08993 * 109.54204 * 63.10190 * 14 13 12 29 29 H 1.09001 * 109.46953 * 59.80123 * 18 16 15 30 30 H 1.08999 * 109.46903 * 179.80290 * 18 16 15 31 31 H 1.00898 * 111.00240 * 56.04924 * 19 18 16 32 32 H 1.00905 * 110.99773 * 179.97438 * 19 18 16 33 33 H 1.09001 * 109.50836 * 297.54961 * 20 12 2 34 34 H 1.09005 * 109.50634 * 57.67027 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1617 -4.4118 10 1 2.4868 -0.1414 -5.1123 11 1 3.6294 -1.7584 -3.7121 12 7 2.0196 -0.6925 1.1994 13 6 3.4745 -0.8932 1.1350 14 6 3.9327 -1.6688 2.3729 15 8 3.5358 -0.9578 3.5486 16 6 2.1248 -0.7453 3.6441 17 1 1.6136 -1.7072 3.6814 18 6 1.8117 0.0495 4.9135 19 7 2.2691 -0.7044 6.0884 20 6 1.6484 0.0397 2.4190 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.7096 1.1617 -3.4844 25 1 3.7245 -1.4593 0.2377 26 1 3.9746 0.0749 1.1063 27 1 5.0179 -1.7702 2.3579 28 1 3.4746 -2.6578 2.3737 29 1 2.3245 1.0106 4.8762 30 1 0.7364 0.2137 4.9833 31 1 3.2510 -0.9255 6.0164 32 1 2.0739 -0.1999 6.9402 33 1 2.1191 1.0228 2.4109 34 1 0.5651 0.1546 2.4590 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229010010.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:40 Heat of formation + Delta-G solvation = -63.836985 kcal Electronic energy + Delta-G solvation = -15165.973040 eV Core-core repulsion = 12711.747362 eV Total energy + Delta-G solvation = -2454.225678 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.65662 -37.52521 -35.56558 -34.61934 -31.85123 -31.35065 -27.72985 -27.52638 -25.26636 -23.35047 -21.86683 -21.15782 -18.46810 -17.67966 -17.31943 -16.62665 -16.28965 -16.15378 -15.73395 -15.07322 -14.95178 -14.72988 -14.31613 -13.65053 -13.42453 -12.98217 -12.92992 -12.64498 -12.42841 -12.33221 -12.21772 -12.09625 -11.91938 -11.34893 -10.90175 -10.54448 -10.46124 -9.61758 -9.07141 -8.14694 -6.27406 1.41834 1.42741 1.52613 2.39919 2.78362 3.09329 3.17497 3.63467 4.03753 4.14671 4.19129 4.23923 4.35798 4.50088 4.57995 4.64523 4.72660 4.79998 4.96877 4.99362 5.03915 5.09654 5.18849 5.45408 5.66945 5.73126 6.15091 6.18685 6.24011 6.28348 6.62672 6.64586 6.86037 7.42066 8.91746 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.054295 B = 0.007799 C = 0.007033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.580486 B = 3589.122942 C = 3980.219694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.215 3.785 3 H -0.040 1.040 4 C -0.525 4.525 5 H 0.064 0.936 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.963 3.037 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.266 1.266 12 N -0.537 5.537 13 C 0.027 3.973 14 C 0.074 3.926 15 O -0.393 6.393 16 C 0.103 3.897 17 H 0.064 0.936 18 C 0.078 3.922 19 N -0.849 5.849 20 C 0.024 3.976 21 H 0.033 0.967 22 H 0.029 0.971 23 H 0.061 0.939 24 H 0.262 0.738 25 H 0.083 0.917 26 H 0.012 0.988 27 H 0.118 0.882 28 H 0.059 0.941 29 H 0.032 0.968 30 H 0.096 0.904 31 H 0.349 0.651 32 H 0.353 0.647 33 H 0.017 0.983 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.328 -2.438 11.838 12.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.108 3.892 3 H -0.023 1.023 4 C -0.563 4.563 5 H 0.082 0.918 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.788 3.212 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.191 1.191 12 N -0.262 5.262 13 C -0.102 4.102 14 C -0.003 4.003 15 O -0.313 6.313 16 C 0.044 3.956 17 H 0.082 0.918 18 C -0.054 4.054 19 N -0.381 5.381 20 C -0.105 4.105 21 H 0.052 0.948 22 H 0.048 0.952 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.101 0.899 26 H 0.030 0.970 27 H 0.136 0.864 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.115 0.885 31 H 0.162 0.838 32 H 0.166 0.834 33 H 0.035 0.965 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.629 -3.267 11.628 12.361 hybrid contribution 0.915 1.527 -1.306 2.208 sum 3.544 -1.740 10.322 11.051 Atomic orbital electron populations 1.21620 0.96987 0.99372 0.99748 1.19085 0.92933 0.90073 0.87084 1.02296 1.21461 1.31489 1.12489 0.90843 0.91799 1.25754 0.95262 0.95710 1.02053 1.70024 1.37687 1.24146 1.24167 0.85477 0.78934 0.78173 0.78587 1.20046 1.21022 1.19075 1.62311 1.12394 1.49096 1.02386 1.22678 0.88528 0.98894 1.00056 1.22727 1.00869 0.94188 0.82493 1.87802 1.23203 1.77408 1.42842 1.22171 0.81733 0.98366 0.93316 0.91794 1.21695 1.01291 0.93910 0.88483 1.58645 1.25085 1.50241 1.04110 1.22764 1.01487 0.94972 0.91276 0.94819 0.95172 0.92047 0.92862 0.89858 0.96978 0.86426 0.92282 0.94991 0.88540 0.83849 0.83354 0.96469 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.92 8.87 71.98 0.64 -5.28 16 2 C 0.21 11.19 2.07 44.17 0.09 11.28 16 3 H -0.04 -2.37 8.13 -2.39 -0.02 -2.39 16 4 C -0.52 -28.91 7.91 25.60 0.20 -28.71 16 5 H 0.06 3.45 6.07 -2.91 -0.02 3.43 16 6 C 0.01 0.61 5.30 84.66 0.45 1.06 16 7 N -0.92 -53.24 11.32 21.45 0.24 -53.00 16 8 Si 0.96 43.42 29.54 68.60 2.03 45.45 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 12 N -0.54 -23.58 4.59 -874.35 -4.01 -27.59 16 13 C 0.03 1.08 5.29 86.31 0.46 1.53 16 14 C 0.07 2.32 7.01 72.01 0.50 2.83 16 15 O -0.39 -12.58 9.82 -148.98 -1.46 -14.04 16 16 C 0.10 3.19 3.08 30.63 0.09 3.29 16 17 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 18 C 0.08 1.90 6.52 86.31 0.56 2.47 16 19 N -0.85 -18.09 9.62 -186.72 -1.80 -19.89 16 20 C 0.02 0.90 4.71 86.31 0.41 1.31 16 21 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.03 1.31 6.47 -2.39 -0.02 1.29 16 23 H 0.06 3.35 6.07 -2.39 -0.01 3.34 16 24 H 0.26 14.39 8.31 -92.71 -0.77 13.61 16 25 H 0.08 3.53 5.91 -2.39 -0.01 3.51 16 26 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 28 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.03 0.78 8.14 -2.39 -0.02 0.77 16 30 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.35 7.51 8.39 -89.70 -0.75 6.75 16 32 H 0.35 5.64 9.08 -89.69 -0.81 4.82 16 33 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.08 3.05 6.33 -2.38 -0.02 3.03 16 Total: -1.00 -61.53 266.86 -2.06 -63.59 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -0.47 Total: 15.70 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: 3.41 Total: -10.22 kcal Atomic # 7 Polarization: -94.91 SS G_CDS: -5.56 Total: -100.48 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -1.46 Total: -14.04 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -61.53 -2.06 -63.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229010010.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.244 kcal (2) G-P(sol) polarization free energy of solvation -61.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds