Wall clock time and date at job start Mon Mar 30 2020 03:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31595 * 1 3 3 Si 1.86796 * 119.99947 * 2 1 4 4 H 1.48501 * 109.47229 * 269.99801 * 3 2 1 5 5 H 1.48496 * 109.47201 * 30.00091 * 3 2 1 6 6 H 1.48501 * 109.47274 * 150.00012 * 3 2 1 7 7 C 1.38785 * 120.00141 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00281 * 179.97438 * 7 2 1 9 9 N 1.36845 * 119.99668 * 359.97438 * 7 2 1 10 10 C 1.39335 * 119.99774 * 180.02562 * 9 7 2 11 11 C 1.39034 * 120.08060 * 359.44522 * 10 9 7 12 12 C 1.38264 * 119.89803 * 179.81374 * 11 10 9 13 13 F 1.35104 * 119.96682 * 180.21036 * 12 11 10 14 14 C 1.38566 * 120.05789 * 0.44633 * 12 11 10 15 15 C 1.38276 * 120.16791 * 359.78545 * 14 12 11 16 16 C 1.38170 * 120.09872 * 0.02562 * 15 14 12 17 17 Cl 1.73604 * 120.03156 * 179.97438 * 16 15 14 18 18 H 0.97000 * 120.00377 * 359.97438 * 1 2 3 19 19 H 0.96991 * 120.00455 * 359.72580 * 9 7 2 20 20 H 1.08003 * 120.05282 * 0.02562 * 11 10 9 21 21 H 1.08002 * 119.91040 * 179.76507 * 14 12 11 22 22 H 1.07999 * 119.94704 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3160 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4975 2.0464 -1.4001 5 1 1.4474 2.6526 0.7000 6 1 3.5475 1.4402 0.7000 7 6 2.0099 -1.2019 -0.0005 8 1 3.0899 -1.2019 -0.0010 9 7 1.3256 -2.3870 -0.0005 10 6 2.0223 -3.5937 -0.0005 11 6 3.4126 -3.5956 -0.0122 12 6 4.1001 -4.7952 -0.0082 13 9 5.4512 -4.7987 -0.0153 14 6 3.4048 -5.9937 -0.0021 15 6 2.0220 -5.9948 0.0047 16 6 1.3282 -4.7999 0.0047 17 17 -0.4079 -4.8033 0.0125 18 1 -0.4851 0.8400 0.0004 19 1 0.3557 -2.3870 0.0039 20 1 3.9548 -2.6616 -0.0208 21 1 3.9442 -6.9294 -0.0028 22 1 1.4836 -6.9310 0.0091 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231817826.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:42 Heat of formation + Delta-G solvation = -49.036721 kcal Electronic energy + Delta-G solvation = -11782.316973 eV Core-core repulsion = 9276.597091 eV Total energy + Delta-G solvation = -2505.719882 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 215.021 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.75644 -40.10262 -37.16259 -36.79745 -33.86455 -31.07360 -29.85056 -26.71977 -23.56787 -22.84095 -19.82154 -18.96895 -17.42451 -16.98556 -16.72005 -16.44704 -15.90858 -15.45025 -14.69384 -14.49305 -14.11261 -13.50770 -13.15429 -13.11990 -12.59834 -12.46250 -12.13437 -11.99950 -11.74613 -11.56897 -10.70001 -9.51157 -8.69176 -8.57233 -5.84215 0.34890 0.65954 1.40611 1.46335 1.47936 1.53483 2.22311 2.67174 3.14062 3.17943 3.64731 4.00322 4.36302 4.60687 4.78774 5.13414 5.21689 5.23794 5.47242 5.48722 5.71990 6.14540 6.71068 7.30605 7.47070 8.59944 Molecular weight = 215.02amu Principal moments of inertia in cm(-1) A = 0.027913 B = 0.011213 C = 0.008022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.862899 B = 2496.411967 C = 3489.425861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.022 4.022 3 Si 1.001 2.999 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.260 1.260 7 C -0.329 4.329 8 H 0.108 0.892 9 N -0.563 5.563 10 C 0.215 3.785 11 C -0.270 4.270 12 C 0.152 3.848 13 F -0.147 7.147 14 C -0.256 4.256 15 C -0.013 4.013 16 C -0.177 4.177 17 Cl -0.088 7.088 18 H 0.279 0.721 19 H 0.400 0.600 20 H 0.124 0.876 21 H 0.156 0.844 22 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.440 -7.178 0.027 7.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.222 4.222 3 Si 0.824 3.176 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.184 1.184 7 C -0.459 4.459 8 H 0.126 0.874 9 N -0.165 5.165 10 C 0.092 3.908 11 C -0.295 4.295 12 C 0.131 3.869 13 F -0.126 7.126 14 C -0.279 4.279 15 C -0.032 4.032 16 C -0.210 4.210 17 Cl -0.060 7.060 18 H 0.089 0.911 19 H 0.236 0.764 20 H 0.142 0.858 21 H 0.173 0.827 22 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.188 -6.676 0.029 7.398 hybrid contribution -0.243 1.039 -0.007 1.067 sum 2.945 -5.636 0.022 6.359 Atomic orbital electron populations 1.69798 1.07459 1.29674 1.48835 1.26248 0.96521 1.03138 0.96331 0.84789 0.78066 0.76063 0.78729 1.19608 1.20313 1.18361 1.20094 0.93606 0.83358 1.48796 0.87430 1.41197 1.08443 1.02280 1.64597 1.17500 0.91115 0.85667 0.96553 1.20249 0.92326 0.97716 1.19247 1.17518 0.75924 0.94461 0.98959 1.91421 1.29805 1.97553 1.93824 1.20635 0.93744 0.96637 1.16835 1.20668 0.93032 0.95973 0.93526 1.20294 0.83329 0.93959 1.23454 1.98278 1.11297 1.98625 1.97816 0.91147 0.76385 0.85834 0.82676 0.82284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.62 13.05 21.64 0.28 -49.34 14 2 C -0.02 -1.12 5.50 84.86 0.47 -0.65 14 3 Si 1.00 40.18 29.55 68.60 2.03 42.21 14 4 H -0.27 -10.60 7.11 99.48 0.71 -9.90 14 5 H -0.28 -10.95 7.11 99.48 0.71 -10.25 14 6 H -0.26 -9.98 7.11 99.48 0.71 -9.27 14 7 C -0.33 -17.04 9.56 84.04 0.80 -16.23 14 8 H 0.11 5.32 5.68 -2.91 -0.02 5.30 14 9 N -0.56 -28.33 5.39 -184.23 -0.99 -29.32 14 10 C 0.21 9.63 6.62 38.37 0.25 9.88 14 11 C -0.27 -11.46 9.28 22.47 0.21 -11.25 14 12 C 0.15 5.60 7.30 22.35 0.16 5.76 14 13 F -0.15 -5.20 17.27 44.97 0.78 -4.43 14 14 C -0.26 -8.05 10.02 22.36 0.22 -7.83 14 15 C -0.01 -0.40 9.82 22.26 0.22 -0.18 14 16 C -0.18 -6.91 6.34 22.48 0.14 -6.77 14 17 Cl -0.09 -3.27 27.59 -2.72 -0.08 -3.35 14 18 H 0.28 14.11 8.31 -92.71 -0.77 13.34 14 19 H 0.40 20.77 6.56 -92.71 -0.61 20.16 14 20 H 0.12 5.39 5.96 -2.91 -0.02 5.38 14 21 H 0.16 3.83 8.06 -2.91 -0.02 3.81 14 22 H 0.16 3.91 8.06 -2.91 -0.02 3.89 14 Total: -1.00 -54.19 221.23 5.16 -49.03 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.66 Total: 22.47 kcal Atomic # 6 Polarization: -29.75 SS G_CDS: 2.48 Total: -27.27 kcal Atomic # 7 Polarization: -77.95 SS G_CDS: -0.71 Total: -78.66 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.78 Total: -4.43 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Atomic # 17 Polarization: -3.27 SS G_CDS: -0.08 Total: -3.35 kcal Total: -54.19 5.16 -49.03 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231817826.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.009 kcal (2) G-P(sol) polarization free energy of solvation -54.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds