Wall clock time and date at job start Mon Mar 30 2020 02:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00198 * 2 1 4 4 H 1.48501 * 109.47393 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47078 * 59.99253 * 3 2 1 6 6 H 1.48506 * 109.46983 * 299.99771 * 3 2 1 7 7 C 1.38812 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00192 * 206.64972 * 7 2 1 9 9 N 1.36939 * 120.00138 * 26.64436 * 7 2 1 10 10 C 1.46500 * 120.00049 * 220.11522 * 9 7 2 11 11 C 1.52993 * 109.46840 * 84.71712 * 10 9 7 12 12 O 1.42896 * 109.47717 * 64.99830 * 11 10 9 13 13 C 1.46497 * 119.99725 * 40.11953 * 9 7 2 14 14 C 1.53001 * 109.47346 * 89.99955 * 13 9 7 15 15 H 1.09001 * 110.36618 * 297.35063 * 14 13 9 16 16 C 1.54376 * 110.41646 * 174.99925 * 14 13 9 17 17 C 1.54250 * 105.06356 * 217.36768 * 16 14 13 18 18 C 1.54384 * 105.06252 * 359.97438 * 17 16 14 19 19 N 1.48560 * 104.59168 * 23.85158 * 18 17 16 20 20 H 0.96997 * 120.00001 * 186.06410 * 1 2 3 21 21 H 1.08998 * 109.47166 * 204.71609 * 10 9 7 22 22 H 1.08998 * 109.47264 * 324.71327 * 10 9 7 23 23 H 1.09005 * 109.47225 * 185.00116 * 11 10 9 24 24 H 1.09003 * 109.47424 * 304.99338 * 11 10 9 25 25 H 0.96703 * 114.00869 * 180.02562 * 12 11 10 26 26 H 1.08998 * 109.46896 * 209.99543 * 13 9 7 27 27 H 1.09003 * 109.47188 * 329.99599 * 13 9 7 28 28 H 1.08999 * 110.31913 * 336.26610 * 16 14 13 29 29 H 1.08997 * 110.32243 * 98.36447 * 16 14 13 30 30 H 1.09006 * 110.32778 * 118.89238 * 17 16 14 31 31 H 1.09001 * 110.32529 * 241.10043 * 17 16 14 32 32 H 1.08995 * 110.41595 * 142.63025 * 18 17 16 33 33 H 1.09004 * 110.40888 * 264.96004 * 18 17 16 34 34 H 1.00897 * 111.00178 * 200.95997 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8914 2.3965 1.2125 6 1 1.8916 2.3964 -1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0043 -1.2517 0.4201 9 7 1.4346 -2.3254 -0.5308 10 6 1.6049 -3.6199 0.1335 11 6 0.5520 -3.7711 1.2332 12 8 -0.7491 -3.8168 0.6441 13 6 0.6487 -2.2324 -1.7636 14 6 1.5657 -2.4424 -2.9702 15 1 2.3191 -1.6560 -3.0155 16 6 0.7407 -2.4734 -4.2746 17 6 1.4223 -3.5411 -5.1548 18 6 2.6024 -4.0651 -4.3084 19 7 2.2121 -3.7781 -2.9040 20 1 -0.4850 -0.8353 0.0887 21 1 1.4860 -4.4211 -0.5959 22 1 2.6005 -3.6743 0.5738 23 1 0.7333 -4.6932 1.7855 24 1 0.6130 -2.9220 1.9140 25 1 -1.4677 -3.9115 1.2842 26 1 -0.1266 -2.9985 -1.7588 27 1 0.1859 -1.2474 -1.8260 28 1 -0.2901 -2.7583 -4.0639 29 1 0.7711 -1.5005 -4.7650 30 1 0.7262 -4.3502 -5.3762 31 1 1.7889 -3.0928 -6.0783 32 1 2.7295 -5.1374 -4.4561 33 1 3.5196 -3.5352 -4.5658 34 1 3.0206 -3.7592 -2.3007 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236511477.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:07 Heat of formation + Delta-G solvation = -34.598701 kcal Electronic energy + Delta-G solvation = -15385.172417 eV Core-core repulsion = 12932.214606 eV Total energy + Delta-G solvation = -2452.957811 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.12921 -36.40345 -34.69943 -31.24713 -29.78763 -29.63927 -27.20364 -24.63369 -22.79264 -20.63908 -20.25102 -19.34174 -17.14038 -16.45273 -16.20370 -14.89238 -14.46811 -13.97136 -13.63370 -13.40237 -13.01459 -12.51483 -12.28757 -11.99798 -11.59684 -11.12273 -10.98245 -10.92374 -10.68983 -10.59528 -10.11836 -10.07479 -10.01577 -9.87035 -9.30690 -9.05732 -8.26670 -7.95173 -6.62977 -5.90628 -3.28420 3.52033 3.54155 3.68070 4.63864 4.84085 5.10711 5.17572 5.28114 5.41550 5.48218 5.56293 5.81357 5.95582 6.10465 6.14494 6.25178 6.31360 6.36677 6.42591 6.46114 6.62980 6.74814 6.82463 7.00280 7.06291 7.39282 7.54700 7.95694 8.22839 8.42552 8.73079 9.30851 9.94220 10.48121 11.26179 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.022444 B = 0.012785 C = 0.009557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.253611 B = 2189.602630 C = 2929.038599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.015 4.015 3 Si 1.061 2.939 4 H -0.293 1.293 5 H -0.295 1.295 6 H -0.290 1.290 7 C -0.359 4.359 8 H 0.044 0.956 9 N -0.583 5.583 10 C 0.145 3.855 11 C 0.058 3.942 12 O -0.561 6.561 13 C 0.166 3.834 14 C 0.052 3.948 15 H 0.043 0.957 16 C -0.121 4.121 17 C -0.121 4.121 18 C 0.033 3.967 19 N -0.653 5.653 20 H 0.277 0.723 21 H 0.059 0.941 22 H 0.046 0.954 23 H 0.017 0.983 24 H 0.041 0.959 25 H 0.358 0.642 26 H 0.043 0.957 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.029 0.971 34 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.341 -6.612 -4.792 8.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.219 4.219 3 Si 0.891 3.109 4 H -0.219 1.219 5 H -0.222 1.222 6 H -0.217 1.217 7 C -0.489 4.489 8 H 0.062 0.938 9 N -0.303 5.303 10 C 0.019 3.981 11 C -0.023 4.023 12 O -0.364 6.364 13 C 0.039 3.961 14 C -0.060 4.060 15 H 0.061 0.939 16 C -0.160 4.160 17 C -0.159 4.159 18 C -0.097 4.097 19 N -0.282 5.282 20 H 0.088 0.912 21 H 0.078 0.922 22 H 0.064 0.936 23 H 0.035 0.965 24 H 0.059 0.941 25 H 0.202 0.798 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.928 -5.312 -5.371 7.796 hybrid contribution 0.755 -1.038 0.626 1.428 sum 2.683 -6.349 -4.745 8.368 Atomic orbital electron populations 1.70639 1.06859 1.31076 1.45521 1.25869 0.96470 1.01620 0.97983 0.83616 0.74625 0.75998 0.76619 1.21886 1.22196 1.21716 1.19833 0.97926 0.89164 1.41968 0.93793 1.43718 1.61039 1.03251 1.22325 1.21049 0.93847 0.90041 0.93185 1.23024 0.84628 0.96911 0.97707 1.86575 1.15785 1.96937 1.37095 1.20815 0.91536 1.00570 0.83193 1.23200 0.97215 0.89231 0.96312 0.93866 1.22310 1.00067 0.97933 0.95660 1.22251 0.97417 0.98647 0.97628 1.22869 0.96047 0.99901 0.90889 1.63695 1.29542 1.29193 1.05807 0.91217 0.92227 0.93561 0.96512 0.94057 0.79784 0.93908 0.91326 0.91427 0.92151 0.91739 0.92315 0.91287 0.95252 0.84950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.07 12.33 55.49 0.68 -26.39 16 2 C -0.01 -0.41 4.78 -17.43 -0.08 -0.49 16 3 Si 1.06 25.44 29.99 -169.99 -5.10 20.34 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.36 -9.94 9.34 -15.06 -0.14 -10.08 16 8 H 0.04 1.25 7.96 -52.48 -0.42 0.83 16 9 N -0.58 -14.53 2.03 -173.24 -0.35 -14.88 16 10 C 0.15 3.20 5.48 -4.04 -0.02 3.17 16 11 C 0.06 1.19 7.36 37.15 0.27 1.46 16 12 O -0.56 -11.71 13.08 -35.23 -0.46 -12.17 16 13 C 0.17 3.99 4.45 -4.04 -0.02 3.97 16 14 C 0.05 1.07 3.44 -66.08 -0.23 0.84 16 15 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 16 C -0.12 -2.11 6.55 -25.36 -0.17 -2.27 16 17 C -0.12 -1.78 7.00 -25.35 -0.18 -1.96 16 18 C 0.03 0.50 7.47 -2.18 -0.02 0.48 16 19 N -0.65 -12.06 5.97 -102.76 -0.61 -12.67 16 20 H 0.28 8.49 7.48 -40.82 -0.31 8.19 16 21 H 0.06 1.27 7.11 -51.93 -0.37 0.91 16 22 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 23 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 24 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.36 5.73 9.12 45.56 0.42 6.15 16 26 H 0.04 1.06 7.57 -51.93 -0.39 0.67 16 27 H 0.07 1.87 5.82 -51.93 -0.30 1.57 16 28 H 0.07 1.20 7.82 -51.93 -0.41 0.79 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.34 6.28 8.63 -39.29 -0.34 5.94 16 LS Contribution 275.31 15.07 4.15 4.15 Total: -1.00 -30.51 275.31 -6.98 -37.50 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -4.71 Total: 9.00 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -0.58 Total: -4.87 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: -0.28 Total: -53.95 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: -0.46 Total: -12.17 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.10 Total: 20.34 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.51 -6.98 -37.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236511477.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.897 kcal (2) G-P(sol) polarization free energy of solvation -30.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds