Wall clock time and date at job start Mon Mar 30 2020 02:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00198 * 2 1 4 4 H 1.48501 * 109.47393 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47078 * 59.99253 * 3 2 1 6 6 H 1.48506 * 109.46983 * 299.99771 * 3 2 1 7 7 C 1.38812 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00192 * 206.64972 * 7 2 1 9 9 N 1.36939 * 120.00138 * 26.64436 * 7 2 1 10 10 C 1.46500 * 120.00049 * 220.11522 * 9 7 2 11 11 C 1.52993 * 109.46840 * 84.71712 * 10 9 7 12 12 O 1.42896 * 109.47717 * 64.99830 * 11 10 9 13 13 C 1.46497 * 119.99725 * 40.11953 * 9 7 2 14 14 C 1.53001 * 109.47346 * 89.99955 * 13 9 7 15 15 H 1.09001 * 110.36618 * 297.35063 * 14 13 9 16 16 C 1.54376 * 110.41646 * 174.99925 * 14 13 9 17 17 C 1.54250 * 105.06356 * 217.36768 * 16 14 13 18 18 C 1.54384 * 105.06252 * 359.97438 * 17 16 14 19 19 N 1.48560 * 104.59168 * 23.85158 * 18 17 16 20 20 H 0.96997 * 120.00001 * 186.06410 * 1 2 3 21 21 H 1.08998 * 109.47166 * 204.71609 * 10 9 7 22 22 H 1.08998 * 109.47264 * 324.71327 * 10 9 7 23 23 H 1.09005 * 109.47225 * 185.00116 * 11 10 9 24 24 H 1.09003 * 109.47424 * 304.99338 * 11 10 9 25 25 H 0.96703 * 114.00869 * 180.02562 * 12 11 10 26 26 H 1.08998 * 109.46896 * 209.99543 * 13 9 7 27 27 H 1.09003 * 109.47188 * 329.99599 * 13 9 7 28 28 H 1.08999 * 110.31913 * 336.26610 * 16 14 13 29 29 H 1.08997 * 110.32243 * 98.36447 * 16 14 13 30 30 H 1.09006 * 110.32778 * 118.89238 * 17 16 14 31 31 H 1.09001 * 110.32529 * 241.10043 * 17 16 14 32 32 H 1.08995 * 110.41595 * 142.63025 * 18 17 16 33 33 H 1.09004 * 110.40888 * 264.96004 * 18 17 16 34 34 H 1.00897 * 111.00178 * 200.95997 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8914 2.3965 1.2125 6 1 1.8916 2.3964 -1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0043 -1.2517 0.4201 9 7 1.4346 -2.3254 -0.5308 10 6 1.6049 -3.6199 0.1335 11 6 0.5520 -3.7711 1.2332 12 8 -0.7491 -3.8168 0.6441 13 6 0.6487 -2.2324 -1.7636 14 6 1.5657 -2.4424 -2.9702 15 1 2.3191 -1.6560 -3.0155 16 6 0.7407 -2.4734 -4.2746 17 6 1.4223 -3.5411 -5.1548 18 6 2.6024 -4.0651 -4.3084 19 7 2.2121 -3.7781 -2.9040 20 1 -0.4850 -0.8353 0.0887 21 1 1.4860 -4.4211 -0.5959 22 1 2.6005 -3.6743 0.5738 23 1 0.7333 -4.6932 1.7855 24 1 0.6130 -2.9220 1.9140 25 1 -1.4677 -3.9115 1.2842 26 1 -0.1266 -2.9985 -1.7588 27 1 0.1859 -1.2474 -1.8260 28 1 -0.2901 -2.7583 -4.0639 29 1 0.7711 -1.5005 -4.7650 30 1 0.7262 -4.3502 -5.3762 31 1 1.7889 -3.0928 -6.0783 32 1 2.7295 -5.1374 -4.4561 33 1 3.5196 -3.5352 -4.5658 34 1 3.0206 -3.7592 -2.3007 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236511477.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:06 Heat of formation + Delta-G solvation = -57.645038 kcal Electronic energy + Delta-G solvation = -15386.171781 eV Core-core repulsion = 12932.214606 eV Total energy + Delta-G solvation = -2453.957175 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.67739 -38.08144 -36.53495 -33.28637 -31.40626 -31.02458 -28.99689 -26.51331 -24.60232 -22.24110 -21.78687 -20.98467 -19.11228 -18.20166 -17.66358 -16.49790 -16.12291 -15.80317 -15.52035 -15.14200 -14.66275 -14.16735 -13.85247 -13.69991 -12.94766 -12.84447 -12.68614 -12.62764 -12.35676 -12.17384 -11.90574 -11.87375 -11.68857 -11.37904 -11.27192 -10.77890 -10.39015 -9.45349 -8.73481 -8.04938 -5.46122 1.56685 1.63624 1.80010 2.66345 3.25007 3.40844 3.59326 3.63080 3.96245 3.97858 4.18652 4.37742 4.50025 4.60156 4.66030 4.72414 4.74199 4.87446 4.98565 4.99735 5.07624 5.13247 5.22311 5.26890 5.31418 5.46283 5.99544 6.02567 6.46519 6.49844 6.98673 7.24212 7.86523 8.38697 9.03098 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.022444 B = 0.012785 C = 0.009557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.253611 B = 2189.602630 C = 2929.038599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.063 4.063 3 Si 1.108 2.892 4 H -0.276 1.276 5 H -0.291 1.291 6 H -0.288 1.288 7 C -0.358 4.358 8 H 0.036 0.964 9 N -0.593 5.593 10 C 0.143 3.857 11 C 0.065 3.935 12 O -0.581 6.581 13 C 0.178 3.822 14 C 0.058 3.942 15 H 0.019 0.981 16 C -0.121 4.121 17 C -0.113 4.113 18 C 0.032 3.968 19 N -0.659 5.659 20 H 0.260 0.740 21 H 0.067 0.933 22 H 0.053 0.947 23 H 0.057 0.943 24 H 0.012 0.988 25 H 0.379 0.621 26 H 0.030 0.970 27 H 0.031 0.969 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.038 0.962 34 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.312 -7.543 -5.764 10.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.262 4.262 3 Si 0.934 3.066 4 H -0.201 1.201 5 H -0.218 1.218 6 H -0.215 1.215 7 C -0.489 4.489 8 H 0.054 0.946 9 N -0.315 5.315 10 C 0.017 3.983 11 C -0.015 4.015 12 O -0.387 6.387 13 C 0.051 3.949 14 C -0.054 4.054 15 H 0.038 0.962 16 C -0.160 4.160 17 C -0.151 4.151 18 C -0.097 4.097 19 N -0.287 5.287 20 H 0.069 0.931 21 H 0.085 0.915 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.030 0.970 25 H 0.226 0.774 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.056 0.944 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.900 -6.279 -6.342 9.384 hybrid contribution 0.441 -0.854 0.948 1.350 sum 3.341 -7.133 -5.395 9.547 Atomic orbital electron populations 1.70766 1.07768 1.29960 1.48246 1.27116 0.96499 1.04832 0.97800 0.82968 0.74424 0.72613 0.76598 1.20059 1.21828 1.21501 1.19971 0.97464 0.90328 1.41104 0.94646 1.43846 1.60893 1.03633 1.23100 1.21141 0.94711 0.88740 0.93687 1.22856 0.84375 0.97581 0.96730 1.86518 1.16569 1.96986 1.38595 1.20580 0.91819 0.97887 0.84578 1.22912 0.96454 0.89836 0.96187 0.96245 1.22296 0.99403 0.99557 0.94719 1.22257 0.97090 0.98009 0.97764 1.22999 0.96593 1.01396 0.88689 1.63643 1.29735 1.27316 1.08044 0.93050 0.91469 0.92898 0.92521 0.97003 0.77379 0.95180 0.95069 0.92137 0.91587 0.90500 0.89879 0.89147 0.94389 0.85335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.09 12.33 21.65 0.27 -56.82 16 2 C -0.06 -3.62 4.78 84.86 0.41 -3.21 16 3 Si 1.11 51.67 29.99 68.60 2.06 53.73 16 4 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 7 C -0.36 -20.08 9.34 84.03 0.78 -19.30 16 8 H 0.04 2.03 7.96 -2.91 -0.02 2.01 16 9 N -0.59 -29.97 2.03 -702.02 -1.42 -31.39 16 10 C 0.14 6.21 5.48 86.38 0.47 6.68 16 11 C 0.06 2.62 7.36 71.98 0.53 3.15 16 12 O -0.58 -24.00 13.08 -148.98 -1.95 -25.95 16 13 C 0.18 8.75 4.45 86.38 0.38 9.14 16 14 C 0.06 2.38 3.44 45.07 0.15 2.54 16 15 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 16 C -0.12 -4.08 6.55 31.49 0.21 -3.87 16 17 C -0.11 -2.97 7.00 31.49 0.22 -2.75 16 18 C 0.03 0.89 7.47 86.45 0.65 1.54 16 19 N -0.66 -23.38 5.97 -479.04 -2.86 -26.24 16 20 H 0.26 16.52 7.48 -92.71 -0.69 15.83 16 21 H 0.07 2.80 7.11 -2.39 -0.02 2.78 16 22 H 0.05 2.20 8.08 -2.39 -0.02 2.18 16 23 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 24 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.38 11.86 9.12 -74.06 -0.68 11.18 16 26 H 0.03 1.52 7.57 -2.39 -0.02 1.50 16 27 H 0.03 1.77 5.82 -2.39 -0.01 1.75 16 28 H 0.06 2.11 7.82 -2.39 -0.02 2.09 16 29 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.33 12.05 8.63 -89.70 -0.77 11.28 16 Total: -1.00 -66.14 275.31 -0.39 -66.53 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: -0.29 Total: 26.22 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 3.80 Total: -6.08 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -4.02 Total: -114.45 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -1.95 Total: -25.95 kcal Atomic # 14 Polarization: 51.67 SS G_CDS: 2.06 Total: 53.73 kcal Total: -66.14 -0.39 -66.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236511477.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.888 kcal (2) G-P(sol) polarization free energy of solvation -66.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds