Wall clock time and date at job start Mon Mar 30 2020 03:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30866 * 1 3 3 Si 1.86795 * 119.99882 * 2 1 4 4 H 1.48501 * 109.47352 * 275.41388 * 3 2 1 5 5 H 1.48498 * 109.47367 * 35.41416 * 3 2 1 6 6 H 1.48505 * 109.47251 * 155.41288 * 3 2 1 7 7 C 1.39906 * 120.00360 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99800 * 341.77166 * 7 2 1 9 9 C 1.41238 * 119.99922 * 161.76468 * 7 2 1 10 10 C 1.40674 * 120.21607 * 330.12242 * 9 7 2 11 11 C 1.38083 * 119.72229 * 179.72398 * 10 9 7 12 12 N 1.39836 * 119.91930 * 180.27791 * 11 10 9 13 13 C 1.39572 * 120.16175 * 0.53401 * 11 10 9 14 14 Cl 1.73594 * 119.78299 * 179.72032 * 13 11 10 15 15 C 1.38499 * 120.43272 * 359.44096 * 13 11 10 16 16 C 1.37957 * 120.27695 * 0.30135 * 15 13 11 17 17 F 1.35102 * 120.08641 * 179.97438 * 16 15 13 18 18 H 0.96996 * 120.00369 * 359.97438 * 1 2 3 19 19 H 1.07997 * 120.14007 * 359.97438 * 10 9 7 20 20 H 0.96998 * 120.00014 * 180.25647 * 12 11 10 21 21 H 0.96994 * 120.00000 * 0.25282 * 12 11 10 22 22 H 1.08003 * 119.86262 * 180.27442 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.3757 2.1125 -1.3938 5 1 1.5020 2.6169 0.8113 6 1 3.5927 1.4099 0.5826 7 6 2.0083 -1.2116 -0.0005 8 1 1.5090 -2.1235 0.2916 9 6 3.3674 -1.2420 -0.3833 10 6 3.8616 -0.3109 -1.3148 11 6 5.1935 -0.3463 -1.6775 12 7 5.6905 0.5810 -2.5986 13 6 6.0438 -1.3087 -1.1309 14 17 7.7149 -1.3488 -1.5992 15 6 5.5644 -2.2283 -0.2129 16 6 4.2381 -2.2060 0.1662 17 9 3.7744 -3.1052 1.0616 18 1 -0.4850 0.8400 0.0004 19 1 3.2030 0.4311 -1.7415 20 1 6.6250 0.5549 -2.8570 21 1 5.1006 1.2503 -2.9793 22 1 6.2315 -2.9663 0.2076 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238655239.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:13 Heat of formation + Delta-G solvation = -46.711398 kcal Electronic energy + Delta-G solvation = -12063.879140 eV Core-core repulsion = 9558.260092 eV Total energy + Delta-G solvation = -2505.619048 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 215.021 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -47.35144 -38.10408 -35.57400 -34.18991 -33.07022 -30.48851 -27.35417 -25.21302 -22.11401 -20.51754 -17.84313 -16.69016 -16.44123 -15.59874 -14.86114 -14.29314 -14.20467 -13.50177 -12.89091 -12.62738 -12.54789 -12.15527 -11.86095 -11.11347 -10.98656 -10.59217 -10.26757 -10.16077 -9.89334 -9.50630 -9.12077 -7.82045 -7.15908 -6.66939 -4.69500 2.28140 2.48946 2.98130 3.10983 3.15171 3.22473 3.84747 4.24528 4.53058 5.12250 5.71816 5.78613 6.34966 6.39911 6.77458 6.83270 6.98816 7.13938 7.49464 7.69171 8.00920 8.17806 8.36946 8.44915 8.55372 9.84666 Molecular weight = 215.02amu Principal moments of inertia in cm(-1) A = 0.035361 B = 0.012717 C = 0.009893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.641104 B = 2201.314507 C = 2829.618269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.084 3.916 3 Si 0.919 3.081 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.241 1.241 7 C -0.424 4.424 8 H 0.099 0.901 9 C 0.101 3.899 10 C -0.293 4.293 11 C 0.260 3.740 12 N -0.885 5.885 13 C -0.203 4.203 14 Cl -0.116 7.116 15 C -0.066 4.066 16 C -0.037 4.037 17 F -0.155 7.155 18 H 0.290 0.710 19 H 0.115 0.885 20 H 0.392 0.608 21 H 0.392 0.608 22 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.315 2.655 -2.826 8.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.138 4.138 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.216 1.216 6 H -0.164 1.164 7 C -0.451 4.451 8 H 0.117 0.883 9 C 0.096 3.904 10 C -0.317 4.317 11 C 0.155 3.845 12 N -0.425 5.425 13 C -0.234 4.234 14 Cl -0.088 7.088 15 C -0.086 4.086 16 C -0.059 4.059 17 F -0.134 7.134 18 H 0.100 0.900 19 H 0.133 0.867 20 H 0.221 0.779 21 H 0.219 0.781 22 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.122 2.651 -2.764 8.087 hybrid contribution 0.383 0.801 -0.188 0.907 sum 7.505 3.452 -2.952 8.772 Atomic orbital electron populations 1.69698 1.08236 1.30856 1.32456 1.26262 0.94812 1.02079 0.90621 0.86168 0.81460 0.79002 0.78888 1.19562 1.21644 1.16385 1.19503 0.92696 0.96644 1.36224 0.88294 1.17465 0.92963 0.90038 0.89911 1.20113 0.93125 1.09191 1.09285 1.17159 0.91522 0.87593 0.88193 1.42491 1.13191 1.36737 1.50109 1.19200 0.83344 1.07492 1.13368 1.98210 1.19785 1.98494 1.92348 1.20151 0.93981 0.97840 0.96635 1.17338 0.91663 0.97621 0.99240 1.91312 1.89415 1.66297 1.66380 0.89952 0.86743 0.77948 0.78095 0.86572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.15 13.93 55.55 0.77 -19.38 14 2 C 0.08 2.11 5.40 -17.34 -0.09 2.02 14 3 Si 0.92 19.89 24.52 -169.99 -4.17 15.72 14 4 H -0.27 -5.51 6.71 56.52 0.38 -5.13 14 5 H -0.29 -6.04 7.11 56.52 0.40 -5.64 14 6 H -0.24 -5.42 6.86 56.52 0.39 -5.04 14 7 C -0.42 -11.25 9.25 -37.82 -0.35 -11.60 14 8 H 0.10 2.80 7.97 -52.49 -0.42 2.38 14 9 C 0.10 2.53 5.11 -106.78 -0.55 1.99 14 10 C -0.29 -6.73 7.00 -38.72 -0.27 -7.00 14 11 C 0.26 5.41 6.74 -83.77 -0.56 4.84 14 12 N -0.88 -14.77 9.05 32.41 0.29 -14.48 14 13 C -0.20 -4.20 6.36 -38.99 -0.25 -4.45 14 14 Cl -0.12 -2.01 27.56 -51.86 -1.43 -3.44 14 15 C -0.07 -1.42 9.77 -39.59 -0.39 -1.81 14 16 C -0.04 -0.90 7.30 -38.62 -0.28 -1.18 14 17 F -0.15 -3.77 16.76 2.25 0.04 -3.73 14 18 H 0.29 6.62 8.30 -40.82 -0.34 6.28 14 19 H 0.12 2.57 4.74 -52.49 -0.25 2.32 14 20 H 0.39 5.84 7.48 -40.82 -0.31 5.53 14 21 H 0.39 5.78 8.84 -40.82 -0.36 5.42 14 22 H 0.12 2.24 8.06 -52.48 -0.42 1.82 14 LS Contribution 214.80 15.07 3.24 3.24 Total: -1.00 -26.39 214.80 -4.92 -31.31 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -0.93 Total: 7.94 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: -2.74 Total: -17.18 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 1.07 Total: -33.86 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.04 Total: -3.73 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.17 Total: 15.72 kcal Atomic # 17 Polarization: -2.01 SS G_CDS: -1.43 Total: -3.44 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -26.39 -4.92 -31.31 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238655239.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.401 kcal (2) G-P(sol) polarization free energy of solvation -26.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds