Wall clock time and date at job start Mon Mar 30 2020 03:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30866 * 1 3 3 Si 1.86795 * 119.99882 * 2 1 4 4 H 1.48501 * 109.47352 * 275.41388 * 3 2 1 5 5 H 1.48498 * 109.47367 * 35.41416 * 3 2 1 6 6 H 1.48505 * 109.47251 * 155.41288 * 3 2 1 7 7 C 1.39906 * 120.00360 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99800 * 341.77166 * 7 2 1 9 9 C 1.41238 * 119.99922 * 161.76468 * 7 2 1 10 10 C 1.40674 * 120.21607 * 330.12242 * 9 7 2 11 11 C 1.38083 * 119.72229 * 179.72398 * 10 9 7 12 12 N 1.39836 * 119.91930 * 180.27791 * 11 10 9 13 13 C 1.39572 * 120.16175 * 0.53401 * 11 10 9 14 14 Cl 1.73594 * 119.78299 * 179.72032 * 13 11 10 15 15 C 1.38499 * 120.43272 * 359.44096 * 13 11 10 16 16 C 1.37957 * 120.27695 * 0.30135 * 15 13 11 17 17 F 1.35102 * 120.08641 * 179.97438 * 16 15 13 18 18 H 0.96996 * 120.00369 * 359.97438 * 1 2 3 19 19 H 1.07997 * 120.14007 * 359.97438 * 10 9 7 20 20 H 0.96998 * 120.00014 * 180.25647 * 12 11 10 21 21 H 0.96994 * 120.00000 * 0.25282 * 12 11 10 22 22 H 1.08003 * 119.86262 * 180.27442 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.3757 2.1125 -1.3938 5 1 1.5020 2.6169 0.8113 6 1 3.5927 1.4099 0.5826 7 6 2.0083 -1.2116 -0.0005 8 1 1.5090 -2.1235 0.2916 9 6 3.3674 -1.2420 -0.3833 10 6 3.8616 -0.3109 -1.3148 11 6 5.1935 -0.3463 -1.6775 12 7 5.6905 0.5810 -2.5986 13 6 6.0438 -1.3087 -1.1309 14 17 7.7149 -1.3488 -1.5992 15 6 5.5644 -2.2283 -0.2129 16 6 4.2381 -2.2060 0.1662 17 9 3.7744 -3.1052 1.0616 18 1 -0.4850 0.8400 0.0004 19 1 3.2030 0.4311 -1.7415 20 1 6.6250 0.5549 -2.8570 21 1 5.1006 1.2503 -2.9793 22 1 6.2315 -2.9663 0.2076 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238655239.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:13 Heat of formation + Delta-G solvation = -63.949374 kcal Electronic energy + Delta-G solvation = -12064.626635 eV Core-core repulsion = 9558.260092 eV Total energy + Delta-G solvation = -2506.366543 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 215.021 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.21923 -39.83478 -37.16244 -35.92442 -34.76234 -32.29943 -29.04080 -27.05703 -23.88085 -22.28113 -19.66990 -18.45585 -18.07819 -17.31082 -16.59082 -16.06586 -15.97446 -15.29150 -14.63953 -14.35049 -14.22766 -13.85595 -13.66363 -12.83518 -12.71663 -12.20901 -12.00084 -11.79336 -11.62977 -11.22101 -10.85443 -9.59859 -9.01011 -8.30232 -6.63775 0.51010 0.71214 1.25100 1.41028 1.50276 1.50861 2.09929 2.43964 3.06048 3.26419 3.98848 4.03542 4.60682 4.65198 5.02367 5.10635 5.22706 5.38140 5.64881 5.91261 6.12668 6.42237 6.62535 6.67988 7.06935 8.06360 Molecular weight = 215.02amu Principal moments of inertia in cm(-1) A = 0.035361 B = 0.012717 C = 0.009893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.641104 B = 2201.314507 C = 2829.618269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.050 3.950 3 Si 0.972 3.028 4 H -0.244 1.244 5 H -0.277 1.277 6 H -0.254 1.254 7 C -0.467 4.467 8 H 0.057 0.943 9 C 0.089 3.911 10 C -0.297 4.297 11 C 0.264 3.736 12 N -0.865 5.865 13 C -0.197 4.197 14 Cl -0.078 7.078 15 C -0.057 4.057 16 C -0.072 4.072 17 F -0.165 7.165 18 H 0.300 0.700 19 H 0.121 0.879 20 H 0.405 0.595 21 H 0.405 0.595 22 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.902 4.185 -4.077 11.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.167 4.167 3 Si 0.794 3.206 4 H -0.168 1.168 5 H -0.203 1.203 6 H -0.177 1.177 7 C -0.495 4.495 8 H 0.076 0.924 9 C 0.085 3.915 10 C -0.322 4.322 11 C 0.157 3.843 12 N -0.407 5.407 13 C -0.229 4.229 14 Cl -0.050 7.050 15 C -0.077 4.077 16 C -0.094 4.094 17 F -0.145 7.145 18 H 0.111 0.889 19 H 0.138 0.862 20 H 0.235 0.765 21 H 0.235 0.765 22 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 9.727 4.197 -4.054 11.343 hybrid contribution -0.166 0.241 0.113 0.314 sum 9.561 4.439 -3.941 11.254 Atomic orbital electron populations 1.69714 1.09360 1.32226 1.34177 1.26958 0.95429 1.04474 0.89841 0.85377 0.79453 0.75502 0.80264 1.16818 1.20331 1.17726 1.19398 0.94072 0.96153 1.39902 0.92436 1.17630 0.92485 0.91066 0.90314 1.20185 0.94302 1.08850 1.08879 1.17186 0.90822 0.88029 0.88305 1.42422 1.14141 1.35659 1.48430 1.19433 0.85404 1.06220 1.11826 1.98230 1.16447 1.98379 1.91909 1.20399 0.93086 0.98113 0.96092 1.17654 0.92904 0.98348 1.00471 1.91273 1.89728 1.66638 1.66841 0.88902 0.86172 0.76464 0.76528 0.84225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.78 13.93 21.82 0.30 -43.47 14 2 C 0.05 2.60 5.40 85.24 0.46 3.06 14 3 Si 0.97 40.22 24.52 68.60 1.68 41.91 14 4 H -0.24 -8.98 6.71 99.48 0.67 -8.31 14 5 H -0.28 -10.80 7.11 99.48 0.71 -10.09 14 6 H -0.25 -10.92 6.86 99.48 0.68 -10.23 14 7 C -0.47 -26.07 9.25 23.41 0.22 -25.85 14 8 H 0.06 3.54 7.97 -2.91 -0.02 3.52 14 9 C 0.09 4.54 5.11 -21.26 -0.11 4.44 14 10 C -0.30 -13.20 7.00 22.83 0.16 -13.04 14 11 C 0.26 10.12 6.74 38.15 0.26 10.38 14 12 N -0.86 -25.03 9.05 -51.36 -0.46 -25.50 14 13 C -0.20 -7.50 6.36 22.65 0.14 -7.36 14 14 Cl -0.08 -2.35 27.56 -2.72 -0.07 -2.43 14 15 C -0.06 -2.34 9.77 22.27 0.22 -2.12 14 16 C -0.07 -3.51 7.30 22.89 0.17 -3.34 14 17 F -0.17 -8.33 16.76 44.97 0.75 -7.57 14 18 H 0.30 13.97 8.30 -92.71 -0.77 13.20 14 19 H 0.12 5.13 4.74 -2.91 -0.01 5.12 14 20 H 0.40 10.02 7.48 -92.71 -0.69 9.33 14 21 H 0.41 10.07 8.84 -92.71 -0.82 9.25 14 22 H 0.14 5.01 8.06 -2.91 -0.02 4.98 14 Total: -1.00 -57.56 214.80 3.43 -54.13 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -0.29 Total: 16.76 kcal Atomic # 6 Polarization: -35.35 SS G_CDS: 1.51 Total: -33.83 kcal Atomic # 7 Polarization: -68.81 SS G_CDS: -0.16 Total: -68.97 kcal Atomic # 9 Polarization: -8.33 SS G_CDS: 0.75 Total: -7.57 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 1.68 Total: 41.91 kcal Atomic # 17 Polarization: -2.35 SS G_CDS: -0.07 Total: -2.43 kcal Total: -57.56 3.43 -54.13 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238655239.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.816 kcal (2) G-P(sol) polarization free energy of solvation -57.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds