Wall clock time and date at job start Mon Mar 30 2020 02:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00015 * 2 1 4 4 H 1.48507 * 109.46790 * 274.31992 * 3 2 1 5 5 H 1.48493 * 109.47088 * 34.31619 * 3 2 1 6 6 H 1.48501 * 109.47370 * 154.32316 * 3 2 1 7 7 C 1.38807 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00194 * 197.64499 * 7 2 1 9 9 N 1.36932 * 120.00063 * 17.91959 * 7 2 1 10 10 C 1.46926 * 120.63124 * 207.56019 * 9 7 2 11 11 C 1.53189 * 108.77762 * 233.58232 * 10 9 7 12 12 H 1.09002 * 109.49253 * 65.35237 * 11 10 9 13 13 C 1.53001 * 109.49923 * 185.41355 * 11 10 9 14 14 C 1.52998 * 109.47274 * 295.00240 * 13 11 10 15 15 O 1.42896 * 109.47634 * 179.97438 * 14 13 11 16 16 C 1.53038 * 109.31552 * 305.36770 * 11 10 9 17 17 C 1.53040 * 109.53608 * 61.36146 * 16 11 10 18 18 H 1.09006 * 109.49683 * 178.65252 * 17 16 11 19 19 N 1.46898 * 109.49882 * 58.59094 * 17 16 11 20 20 C 1.46927 * 120.63093 * 27.27911 * 9 7 2 21 21 H 0.97003 * 120.00368 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.58723 * 353.37457 * 10 9 7 23 23 H 1.09004 * 109.59023 * 113.65380 * 10 9 7 24 24 H 1.09002 * 109.47153 * 54.99897 * 13 11 10 25 25 H 1.09003 * 109.47279 * 174.99978 * 13 11 10 26 26 H 1.09003 * 109.47272 * 299.99864 * 14 13 11 27 27 H 1.09003 * 109.47180 * 59.99678 * 14 13 11 28 28 H 0.96694 * 114.00337 * 179.97438 * 15 14 13 29 29 H 1.08997 * 109.46386 * 181.38701 * 16 11 10 30 30 H 1.09009 * 109.45735 * 301.35575 * 16 11 10 31 31 H 1.00896 * 110.99779 * 179.97438 * 19 17 16 32 32 H 1.00901 * 110.99503 * 303.94815 * 19 17 16 33 33 H 1.08998 * 109.58694 * 246.20121 * 20 9 7 34 34 H 1.08997 * 109.58262 * 6.62893 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4063 2.0991 -1.3962 5 1 1.4962 2.6246 0.7893 6 1 3.5904 1.4156 0.6066 7 6 2.0102 -1.2021 -0.0005 8 1 3.0521 -1.2243 0.2830 9 7 1.3754 -2.3591 -0.3659 10 6 1.8195 -3.6558 0.1630 11 6 2.0826 -4.6035 -1.0115 12 1 2.9204 -4.2295 -1.6000 13 6 2.4157 -5.9981 -0.4777 14 6 3.7312 -5.9452 0.3017 15 8 4.0420 -7.2476 0.8008 16 6 0.8326 -4.6784 -1.8913 17 6 0.5176 -3.2897 -2.4522 18 1 -0.3587 -3.3484 -3.0978 19 7 1.6661 -2.8020 -3.2275 20 6 0.2332 -2.3267 -1.2896 21 1 -0.4851 0.8400 0.0004 22 1 2.7365 -3.5217 0.7368 23 1 1.0443 -4.0734 0.8055 24 1 1.6160 -6.3353 0.1818 25 1 2.5155 -6.6923 -1.3122 26 1 4.5309 -5.6080 -0.3577 27 1 3.6314 -5.2510 1.1362 28 1 4.8654 -7.2890 1.3060 29 1 1.0086 -5.3711 -2.7142 30 1 -0.0103 -5.0290 -1.2955 31 1 1.4821 -1.8862 -3.6089 32 1 2.5053 -2.7990 -2.6674 33 1 -0.6698 -2.6392 -0.7652 34 1 0.1032 -1.3152 -1.6745 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250679405.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:45 Heat of formation + Delta-G solvation = -44.650214 kcal Electronic energy + Delta-G solvation = -15276.986733 eV Core-core repulsion = 12823.593055 eV Total energy + Delta-G solvation = -2453.393677 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.52878 -36.69024 -33.75873 -33.17904 -30.74562 -28.47349 -27.09469 -25.34565 -23.07588 -21.74471 -20.40253 -18.57099 -17.24356 -16.66454 -15.28433 -15.14190 -14.74554 -14.20840 -13.93865 -13.60526 -13.19641 -12.86475 -12.33135 -11.92801 -11.82101 -11.24525 -11.14310 -11.02306 -10.99131 -10.73188 -10.42943 -10.20713 -9.89819 -9.82672 -9.54925 -9.38586 -8.54996 -7.95784 -6.69611 -5.84457 -3.28317 3.31938 3.39798 3.40870 4.34986 4.43472 5.20965 5.28956 5.30319 5.39427 5.48693 5.62685 5.69479 5.74466 5.82000 6.13385 6.20184 6.29381 6.36657 6.39051 6.49422 6.67006 6.76699 6.83818 7.00123 7.22284 7.54540 7.70635 7.71944 7.98215 8.24909 8.37597 9.13999 9.77813 10.34668 11.22177 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.032465 B = 0.009459 C = 0.008129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.247079 B = 2959.298412 C = 3443.577920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.256 4.256 8 H 0.066 0.934 9 N -0.590 5.590 10 C 0.147 3.853 11 C -0.102 4.102 12 H 0.071 0.929 13 C -0.109 4.109 14 C 0.073 3.927 15 O -0.580 6.580 16 C -0.094 4.094 17 C 0.061 3.939 18 H 0.064 0.936 19 N -0.839 5.839 20 C 0.139 3.861 21 H 0.254 0.746 22 H 0.052 0.948 23 H 0.017 0.983 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.043 0.957 27 H 0.051 0.949 28 H 0.374 0.626 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.331 0.669 32 H 0.342 0.658 33 H 0.017 0.983 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.692 -8.184 -1.746 9.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.084 0.916 9 N -0.313 5.313 10 C 0.021 3.979 11 C -0.123 4.123 12 H 0.090 0.910 13 C -0.147 4.147 14 C -0.004 4.004 15 O -0.385 6.385 16 C -0.132 4.132 17 C -0.053 4.053 18 H 0.082 0.918 19 N -0.368 5.368 20 C 0.012 3.988 21 H 0.064 0.936 22 H 0.070 0.930 23 H 0.035 0.965 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.220 0.780 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.142 0.858 32 H 0.156 0.844 33 H 0.036 0.964 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.885 -8.803 -2.495 9.941 hybrid contribution 0.867 1.897 1.095 2.356 sum 4.752 -6.906 -1.400 8.499 Atomic orbital electron populations 1.70049 1.05278 1.25517 1.53594 1.25045 0.95255 0.98453 1.00882 0.86288 0.79172 0.83771 0.77628 1.21447 1.21788 1.20403 1.19197 0.92823 0.84915 1.41583 0.91644 1.44059 1.36007 1.01233 1.50002 1.21044 0.97458 0.86773 0.92620 1.21608 0.98407 0.93846 0.98414 0.91042 1.21519 0.95927 0.97856 0.99402 1.22327 0.97292 0.83596 0.97189 1.86456 1.45957 1.31568 1.74559 1.21410 0.97168 0.96758 0.97893 1.22122 0.93123 0.95116 0.94897 0.91805 1.59285 1.06235 1.31190 1.40124 1.21668 0.89026 0.99008 0.89096 0.93619 0.92985 0.96475 0.91656 0.91939 0.93849 0.93121 0.77957 0.92908 0.92562 0.85786 0.84411 0.96443 0.89473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.76 11.19 55.49 0.62 -25.14 16 2 C 0.00 0.07 4.90 -17.43 -0.09 -0.02 16 3 Si 0.90 21.31 29.59 -169.99 -5.03 16.28 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.26 -6.78 9.59 -15.06 -0.14 -6.92 16 8 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 9 N -0.59 -14.21 2.57 -172.06 -0.44 -14.65 16 10 C 0.15 3.01 5.40 -3.71 -0.02 2.99 16 11 C -0.10 -1.75 2.02 -90.50 -0.18 -1.93 16 12 H 0.07 1.26 6.49 -51.93 -0.34 0.93 16 13 C -0.11 -1.64 5.06 -26.73 -0.14 -1.77 16 14 C 0.07 1.01 6.81 37.16 0.25 1.26 16 15 O -0.58 -7.65 13.66 -35.23 -0.48 -8.14 16 16 C -0.09 -1.64 4.89 -26.69 -0.13 -1.77 16 17 C 0.06 1.16 3.71 -67.37 -0.25 0.91 16 18 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 19 N -0.84 -15.56 9.22 -4.37 -0.04 -15.60 16 20 C 0.14 3.25 4.96 -3.49 -0.02 3.24 16 21 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 22 H 0.05 1.04 6.65 -51.93 -0.35 0.69 16 23 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.71 6.70 -51.93 -0.35 0.36 16 28 H 0.37 3.11 9.12 45.56 0.42 3.52 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 31 H 0.33 6.12 9.04 -39.29 -0.36 5.76 16 32 H 0.34 6.63 6.55 -39.29 -0.26 6.38 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.09 2.27 6.02 -51.93 -0.31 1.96 16 LS Contribution 266.79 15.07 4.02 4.02 Total: -1.00 -29.22 266.79 -6.54 -35.75 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -4.47 Total: 11.48 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -0.71 Total: -4.01 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: 0.14 Total: -55.39 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: -0.48 Total: -8.14 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.22 -6.54 -35.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250679405.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.897 kcal (2) G-P(sol) polarization free energy of solvation -29.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds