Wall clock time and date at job start Mon Mar 30 2020 02:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00015 * 2 1 4 4 H 1.48507 * 109.46790 * 274.31992 * 3 2 1 5 5 H 1.48493 * 109.47088 * 34.31619 * 3 2 1 6 6 H 1.48501 * 109.47370 * 154.32316 * 3 2 1 7 7 C 1.38807 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00194 * 197.64499 * 7 2 1 9 9 N 1.36932 * 120.00063 * 17.91959 * 7 2 1 10 10 C 1.46926 * 120.63124 * 207.56019 * 9 7 2 11 11 C 1.53189 * 108.77762 * 233.58232 * 10 9 7 12 12 H 1.09002 * 109.49253 * 65.35237 * 11 10 9 13 13 C 1.53001 * 109.49923 * 185.41355 * 11 10 9 14 14 C 1.52998 * 109.47274 * 295.00240 * 13 11 10 15 15 O 1.42896 * 109.47634 * 179.97438 * 14 13 11 16 16 C 1.53038 * 109.31552 * 305.36770 * 11 10 9 17 17 C 1.53040 * 109.53608 * 61.36146 * 16 11 10 18 18 H 1.09006 * 109.49683 * 178.65252 * 17 16 11 19 19 N 1.46898 * 109.49882 * 58.59094 * 17 16 11 20 20 C 1.46927 * 120.63093 * 27.27911 * 9 7 2 21 21 H 0.97003 * 120.00368 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.58723 * 353.37457 * 10 9 7 23 23 H 1.09004 * 109.59023 * 113.65380 * 10 9 7 24 24 H 1.09002 * 109.47153 * 54.99897 * 13 11 10 25 25 H 1.09003 * 109.47279 * 174.99978 * 13 11 10 26 26 H 1.09003 * 109.47272 * 299.99864 * 14 13 11 27 27 H 1.09003 * 109.47180 * 59.99678 * 14 13 11 28 28 H 0.96694 * 114.00337 * 179.97438 * 15 14 13 29 29 H 1.08997 * 109.46386 * 181.38701 * 16 11 10 30 30 H 1.09009 * 109.45735 * 301.35575 * 16 11 10 31 31 H 1.00896 * 110.99779 * 179.97438 * 19 17 16 32 32 H 1.00901 * 110.99503 * 303.94815 * 19 17 16 33 33 H 1.08998 * 109.58694 * 246.20121 * 20 9 7 34 34 H 1.08997 * 109.58262 * 6.62893 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4063 2.0991 -1.3962 5 1 1.4962 2.6246 0.7893 6 1 3.5904 1.4156 0.6066 7 6 2.0102 -1.2021 -0.0005 8 1 3.0521 -1.2243 0.2830 9 7 1.3754 -2.3591 -0.3659 10 6 1.8195 -3.6558 0.1630 11 6 2.0826 -4.6035 -1.0115 12 1 2.9204 -4.2295 -1.6000 13 6 2.4157 -5.9981 -0.4777 14 6 3.7312 -5.9452 0.3017 15 8 4.0420 -7.2476 0.8008 16 6 0.8326 -4.6784 -1.8913 17 6 0.5176 -3.2897 -2.4522 18 1 -0.3587 -3.3484 -3.0978 19 7 1.6661 -2.8020 -3.2275 20 6 0.2332 -2.3267 -1.2896 21 1 -0.4851 0.8400 0.0004 22 1 2.7365 -3.5217 0.7368 23 1 1.0443 -4.0734 0.8055 24 1 1.6160 -6.3353 0.1818 25 1 2.5155 -6.6923 -1.3122 26 1 4.5309 -5.6080 -0.3577 27 1 3.6314 -5.2510 1.1362 28 1 4.8654 -7.2890 1.3060 29 1 1.0086 -5.3711 -2.7142 30 1 -0.0103 -5.0290 -1.2955 31 1 1.4821 -1.8862 -3.6089 32 1 2.5053 -2.7990 -2.6674 33 1 -0.6698 -2.6392 -0.7652 34 1 0.1032 -1.3152 -1.6745 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250679405.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:45 Heat of formation + Delta-G solvation = -67.176127 kcal Electronic energy + Delta-G solvation = -15277.963530 eV Core-core repulsion = 12823.593055 eV Total energy + Delta-G solvation = -2454.370474 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.08410 -37.81548 -35.53064 -34.65703 -32.63959 -29.88436 -28.66199 -27.26625 -24.41659 -23.55820 -21.80184 -20.15640 -18.73531 -18.13147 -16.99556 -16.50925 -16.37027 -15.75508 -15.47716 -15.02623 -14.88567 -14.54894 -13.89929 -13.48201 -13.33099 -12.93149 -12.84348 -12.60935 -12.46717 -12.33283 -12.11712 -12.00007 -11.48781 -11.25671 -11.04434 -10.73520 -10.57097 -9.57892 -8.65508 -7.88370 -5.35506 1.44454 1.46459 1.54928 2.48059 3.23874 3.32967 3.66687 3.94069 3.99413 4.01987 4.22325 4.39788 4.44394 4.59087 4.60719 4.72762 4.82062 4.90769 5.06822 5.08665 5.14538 5.23201 5.32020 5.44083 5.55022 5.61573 5.67099 6.32715 6.42742 6.69159 6.92980 7.11387 7.82630 8.34937 9.15461 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.032465 B = 0.009459 C = 0.008129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.247079 B = 2959.298412 C = 3443.577920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.050 4.050 3 Si 0.965 3.035 4 H -0.285 1.285 5 H -0.300 1.300 6 H -0.268 1.268 7 C -0.259 4.259 8 H 0.069 0.931 9 N -0.604 5.604 10 C 0.146 3.854 11 C -0.086 4.086 12 H 0.072 0.928 13 C -0.103 4.103 14 C 0.076 3.924 15 O -0.593 6.593 16 C -0.092 4.092 17 C 0.070 3.930 18 H 0.075 0.925 19 N -0.827 5.827 20 C 0.148 3.852 21 H 0.249 0.751 22 H 0.055 0.945 23 H 0.005 0.995 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.045 0.955 28 H 0.396 0.604 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.332 0.668 32 H 0.339 0.661 33 H -0.011 1.011 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.166 -9.224 -2.323 11.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.794 3.206 4 H -0.212 1.212 5 H -0.227 1.227 6 H -0.192 1.192 7 C -0.389 4.389 8 H 0.087 0.913 9 N -0.327 5.327 10 C 0.021 3.979 11 C -0.107 4.107 12 H 0.090 0.910 13 C -0.141 4.141 14 C -0.001 4.001 15 O -0.402 6.402 16 C -0.129 4.129 17 C -0.044 4.044 18 H 0.093 0.907 19 N -0.355 5.355 20 C 0.020 3.980 21 H 0.058 0.942 22 H 0.074 0.926 23 H 0.023 0.977 24 H 0.078 0.922 25 H 0.092 0.908 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.245 0.755 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.142 0.858 32 H 0.152 0.848 33 H 0.007 0.993 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.396 -9.876 -3.070 11.666 hybrid contribution 0.414 2.166 1.324 2.572 sum 5.811 -7.711 -1.745 9.811 Atomic orbital electron populations 1.70205 1.06732 1.25736 1.55415 1.25763 0.95911 1.01448 1.01410 0.85285 0.78209 0.79765 0.77378 1.21203 1.22659 1.19232 1.19512 0.93075 0.85924 1.40393 0.91336 1.44276 1.35900 1.01972 1.50513 1.21173 0.96964 0.85850 0.93959 1.21392 0.98256 0.94253 0.96760 0.90976 1.21418 0.96603 0.96266 0.99839 1.22212 0.96932 0.83864 0.97089 1.86397 1.47683 1.31028 1.75048 1.21406 0.97284 0.95716 0.98543 1.22013 0.93899 0.95101 0.93353 0.90713 1.59314 1.05687 1.31199 1.39324 1.21522 0.87961 0.98377 0.90123 0.94234 0.92645 0.97686 0.92226 0.90801 0.92699 0.93697 0.75481 0.90774 0.92582 0.85769 0.84760 0.99313 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.77 11.19 21.65 0.24 -54.52 16 2 C -0.05 -2.72 4.90 84.86 0.42 -2.31 16 3 Si 0.96 44.05 29.59 68.60 2.03 46.08 16 4 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.26 -13.71 9.59 84.03 0.81 -12.90 16 8 H 0.07 3.53 7.89 -2.91 -0.02 3.51 16 9 N -0.60 -29.10 2.57 -698.28 -1.79 -30.89 16 10 C 0.15 5.86 5.40 86.36 0.47 6.32 16 11 C -0.09 -2.78 2.02 -10.72 -0.02 -2.80 16 12 H 0.07 2.36 6.49 -2.39 -0.02 2.34 16 13 C -0.10 -2.84 5.06 30.59 0.15 -2.68 16 14 C 0.08 1.90 6.81 71.98 0.49 2.39 16 15 O -0.59 -14.00 13.66 -148.98 -2.03 -16.04 16 16 C -0.09 -2.99 4.89 30.62 0.15 -2.84 16 17 C 0.07 2.60 3.71 45.14 0.17 2.77 16 18 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 19 N -0.83 -29.31 9.22 -167.75 -1.55 -30.85 16 20 C 0.15 6.99 4.96 86.51 0.43 7.42 16 21 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 22 H 0.06 2.16 6.65 -2.39 -0.02 2.14 16 23 H 0.01 0.22 8.14 -2.38 -0.02 0.20 16 24 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.04 1.16 6.70 -2.39 -0.02 1.14 16 28 H 0.40 5.45 9.12 -74.06 -0.68 4.78 16 29 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.33 11.88 9.04 -89.70 -0.81 11.07 16 32 H 0.34 12.54 6.55 -89.69 -0.59 11.95 16 33 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 34 H 0.06 3.00 6.02 -2.39 -0.01 2.99 16 Total: -1.00 -61.78 266.79 -1.01 -62.79 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: -0.96 Total: 28.05 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 3.06 Total: -4.62 kcal Atomic # 7 Polarization: -113.17 SS G_CDS: -3.10 Total: -116.26 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -2.03 Total: -16.04 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -61.78 -1.01 -62.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250679405.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.385 kcal (2) G-P(sol) polarization free energy of solvation -61.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds