Wall clock time and date at job start Mon Mar 30 2020 03:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47298 * 2 1 4 4 F 1.39901 * 109.47273 * 119.99813 * 2 1 3 5 5 C 1.52998 * 109.47395 * 239.99925 * 2 1 3 6 6 H 1.09004 * 109.47052 * 55.10467 * 5 2 1 7 7 C 1.50699 * 109.46875 * 295.10731 * 5 2 1 8 8 H 1.07999 * 120.00475 * 305.48067 * 7 5 2 9 9 C 1.37882 * 120.00211 * 125.48582 * 7 5 2 10 10 N 1.31516 * 119.99814 * 5.95891 * 9 7 5 11 11 Si 1.86797 * 120.00334 * 185.96536 * 9 7 5 12 12 H 1.48499 * 109.47177 * 179.97438 * 11 9 7 13 13 H 1.48507 * 109.46660 * 299.99578 * 11 9 7 14 14 H 1.48500 * 109.47317 * 59.99553 * 11 9 7 15 15 C 1.52996 * 109.47516 * 175.10841 * 5 2 1 16 16 C 1.52999 * 109.46935 * 299.99914 * 15 5 2 17 17 C 1.53003 * 109.47177 * 179.97438 * 16 15 5 18 18 C 1.52995 * 109.46856 * 60.00121 * 17 16 15 19 19 C 1.53004 * 109.47237 * 299.99586 * 18 17 16 20 20 C 1.52996 * 109.46618 * 60.00379 * 19 18 17 21 21 H 1.09000 * 109.47245 * 185.07631 * 1 2 3 22 22 H 1.09004 * 109.46803 * 305.07637 * 1 2 3 23 23 H 1.09002 * 109.47118 * 65.07648 * 1 2 3 24 24 H 0.97005 * 119.99686 * 355.09321 * 10 9 7 25 25 H 1.09004 * 109.47265 * 59.99757 * 15 5 2 26 26 H 1.08996 * 109.47633 * 300.00143 * 16 15 5 27 27 H 1.09004 * 109.47180 * 60.00299 * 16 15 5 28 28 H 1.08997 * 109.46954 * 299.99611 * 17 16 15 29 29 H 1.09002 * 109.47251 * 180.02562 * 17 16 15 30 30 H 1.09000 * 109.46858 * 180.02562 * 18 17 16 31 31 H 1.08997 * 109.47688 * 60.00534 * 18 17 16 32 32 H 1.08997 * 109.47071 * 300.00814 * 19 18 17 33 33 H 1.09003 * 109.46831 * 180.02562 * 19 18 17 34 34 H 1.09002 * 109.47010 * 179.97438 * 20 19 18 35 35 H 1.09004 * 109.47265 * 60.00095 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9963 -0.6595 1.1423 5 6 2.0400 -0.7212 -1.2492 6 1 1.6069 -0.2605 -2.1371 7 6 1.6391 -2.1727 -1.1900 8 1 1.9026 -2.7712 -0.3305 9 6 0.9359 -2.7368 -2.2333 10 7 0.7167 -2.0437 -3.3293 11 14 0.2944 -4.4853 -2.0900 12 1 -0.4230 -4.8532 -3.3371 13 1 1.4336 -5.4149 -1.8812 14 1 -0.6377 -4.5778 -0.9377 15 6 3.5650 -0.6156 -1.3122 16 6 3.9721 0.8580 -1.3723 17 6 5.4972 0.9637 -1.4347 18 6 6.0077 0.2423 -2.6836 19 6 5.6007 -1.2314 -2.6235 20 6 4.0756 -1.3370 -2.5611 21 1 -0.3634 -1.0236 0.0909 22 1 -0.3633 0.5906 0.8411 23 1 -0.3633 0.4331 -0.9320 24 1 0.9869 -1.1133 -3.3769 25 1 3.9982 -1.0763 -0.4244 26 1 3.5390 1.3188 -2.2600 27 1 3.6088 1.3719 -0.4823 28 1 5.9299 0.5032 -0.5466 29 1 5.7872 2.0136 -1.4770 30 1 7.0942 0.3173 -2.7278 31 1 5.5750 0.7029 -3.5717 32 1 6.0334 -1.6919 -1.7354 33 1 5.9648 -1.7453 -3.5131 34 1 3.7856 -2.3869 -2.5188 35 1 3.6428 -0.8764 -3.4492 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257901369.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:40 Heat of formation + Delta-G solvation = -96.273534 kcal Electronic energy + Delta-G solvation = -15504.972197 eV Core-core repulsion = 13029.420003 eV Total energy + Delta-G solvation = -2475.552194 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -46.46240 -38.13259 -34.43496 -31.51073 -30.08595 -29.89319 -26.01171 -23.69181 -22.00083 -21.16757 -19.73121 -18.96898 -16.61171 -15.32347 -14.96937 -14.34135 -13.80953 -13.71125 -13.57678 -13.43681 -12.81561 -12.47035 -11.86501 -11.71173 -11.57000 -11.23890 -11.20656 -10.77206 -10.72771 -10.51836 -10.40576 -10.12685 -9.94204 -9.77163 -9.46779 -9.16444 -9.02162 -8.40164 -8.22604 -6.32346 -3.99156 3.45443 3.46476 3.65080 4.53639 5.21862 5.29065 5.33639 5.42001 5.68989 5.80721 5.86006 5.91849 6.03156 6.08732 6.10827 6.13082 6.16598 6.28628 6.35416 6.46871 6.61893 6.65652 6.71246 6.75046 6.86234 7.04037 7.07827 7.19191 7.30651 7.49950 7.56074 8.26092 8.50886 8.92817 9.68923 11.06163 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.026243 B = 0.012752 C = 0.009770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.686174 B = 2195.274073 C = 2865.185258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.093 3.907 3 H 0.049 0.951 4 F -0.224 7.224 5 C 0.005 3.995 6 H 0.056 0.944 7 C -0.577 4.577 8 H 0.051 0.949 9 C 0.025 3.975 10 N -0.913 5.913 11 Si 1.061 2.939 12 H -0.284 1.284 13 H -0.289 1.289 14 H -0.289 1.289 15 C -0.073 4.073 16 C -0.121 4.121 17 C -0.116 4.116 18 C -0.116 4.116 19 C -0.121 4.121 20 C -0.093 4.093 21 H 0.074 0.926 22 H 0.038 0.962 23 H 0.060 0.940 24 H 0.268 0.732 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.448 4.621 2.265 7.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.056 3.944 3 H 0.067 0.933 4 F -0.205 7.205 5 C -0.015 4.015 6 H 0.074 0.926 7 C -0.615 4.615 8 H 0.069 0.931 9 C -0.179 4.179 10 N -0.550 5.550 11 Si 0.890 3.110 12 H -0.210 1.210 13 H -0.215 1.215 14 H -0.215 1.215 15 C -0.091 4.091 16 C -0.159 4.159 17 C -0.153 4.153 18 C -0.153 4.153 19 C -0.158 4.158 20 C -0.131 4.131 21 H 0.093 0.907 22 H 0.057 0.943 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.661 3.407 1.441 5.951 hybrid contribution 0.819 1.216 0.948 1.747 sum 5.481 4.623 2.389 7.558 Atomic orbital electron populations 1.22158 0.95859 1.03346 1.00458 1.21837 0.94001 0.93780 0.84752 0.93316 1.92682 1.90363 1.83898 1.53586 1.19617 0.91377 0.97606 0.92856 0.92568 1.21704 1.37975 0.94870 1.06992 0.93081 1.25698 0.94426 1.05445 0.92301 1.70868 1.47288 1.10531 1.26347 0.83655 0.76562 0.75071 0.75762 1.20976 1.21510 1.21521 1.21210 0.98247 0.92120 0.97570 1.21775 0.94555 0.98926 1.00629 1.21508 0.96925 0.98914 0.97972 1.21510 0.99060 0.96638 0.98107 1.21607 0.98297 0.95347 1.00576 1.21328 0.92026 1.02217 0.97526 0.90655 0.94302 0.92135 0.91893 0.92673 0.92791 0.92953 0.92559 0.93225 0.93232 0.92495 0.92773 0.93107 0.90727 0.93242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.28 9.38 37.16 0.35 -2.94 16 2 C 0.09 2.00 3.39 -26.73 -0.09 1.91 16 3 H 0.05 0.95 6.18 -51.93 -0.32 0.63 16 4 F -0.22 -5.23 16.26 2.25 0.04 -5.20 16 5 C 0.00 0.11 1.51 -91.78 -0.14 -0.03 16 6 H 0.06 1.41 5.72 -51.93 -0.30 1.11 16 7 C -0.58 -15.31 5.78 -34.44 -0.20 -15.50 16 8 H 0.05 1.43 7.71 -52.49 -0.40 1.03 16 9 C 0.03 0.69 5.45 -17.82 -0.10 0.59 16 10 N -0.91 -25.93 13.65 55.43 0.76 -25.18 16 11 Si 1.06 24.80 29.91 -169.99 -5.08 19.71 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 14 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 15 C -0.07 -1.53 1.68 -90.62 -0.15 -1.68 16 16 C -0.12 -2.17 4.86 -26.73 -0.13 -2.30 16 17 C -0.12 -1.79 5.92 -26.73 -0.16 -1.95 16 18 C -0.12 -1.76 5.92 -26.73 -0.16 -1.92 16 19 C -0.12 -2.07 5.92 -26.73 -0.16 -2.23 16 20 C -0.09 -1.96 4.96 -26.73 -0.13 -2.09 16 21 H 0.07 1.69 7.54 -51.93 -0.39 1.30 16 22 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 24 H 0.27 7.54 6.28 -40.82 -0.26 7.29 16 25 H 0.05 1.24 7.93 -51.93 -0.41 0.83 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.05 0.91 6.32 -51.93 -0.33 0.58 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 1.77 7.22 -51.93 -0.37 1.40 16 35 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 272.23 15.07 4.10 4.10 Total: -1.00 -27.55 272.23 -7.06 -34.61 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -5.81 Total: 0.07 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: -1.07 Total: -28.13 kcal Atomic # 7 Polarization: -25.93 SS G_CDS: 0.76 Total: -25.18 kcal Atomic # 9 Polarization: -5.23 SS G_CDS: 0.04 Total: -5.20 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -5.08 Total: 19.71 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.55 -7.06 -34.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257901369.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.662 kcal (2) G-P(sol) polarization free energy of solvation -27.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds