Wall clock time and date at job start Mon Mar 30 2020 03:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47298 * 2 1 4 4 F 1.39901 * 109.47273 * 119.99813 * 2 1 3 5 5 C 1.52998 * 109.47395 * 239.99925 * 2 1 3 6 6 H 1.09004 * 109.47052 * 55.10467 * 5 2 1 7 7 C 1.50699 * 109.46875 * 295.10731 * 5 2 1 8 8 H 1.07999 * 120.00475 * 305.48067 * 7 5 2 9 9 C 1.37882 * 120.00211 * 125.48582 * 7 5 2 10 10 N 1.31516 * 119.99814 * 5.95891 * 9 7 5 11 11 Si 1.86797 * 120.00334 * 185.96536 * 9 7 5 12 12 H 1.48499 * 109.47177 * 179.97438 * 11 9 7 13 13 H 1.48507 * 109.46660 * 299.99578 * 11 9 7 14 14 H 1.48500 * 109.47317 * 59.99553 * 11 9 7 15 15 C 1.52996 * 109.47516 * 175.10841 * 5 2 1 16 16 C 1.52999 * 109.46935 * 299.99914 * 15 5 2 17 17 C 1.53003 * 109.47177 * 179.97438 * 16 15 5 18 18 C 1.52995 * 109.46856 * 60.00121 * 17 16 15 19 19 C 1.53004 * 109.47237 * 299.99586 * 18 17 16 20 20 C 1.52996 * 109.46618 * 60.00379 * 19 18 17 21 21 H 1.09000 * 109.47245 * 185.07631 * 1 2 3 22 22 H 1.09004 * 109.46803 * 305.07637 * 1 2 3 23 23 H 1.09002 * 109.47118 * 65.07648 * 1 2 3 24 24 H 0.97005 * 119.99686 * 355.09321 * 10 9 7 25 25 H 1.09004 * 109.47265 * 59.99757 * 15 5 2 26 26 H 1.08996 * 109.47633 * 300.00143 * 16 15 5 27 27 H 1.09004 * 109.47180 * 60.00299 * 16 15 5 28 28 H 1.08997 * 109.46954 * 299.99611 * 17 16 15 29 29 H 1.09002 * 109.47251 * 180.02562 * 17 16 15 30 30 H 1.09000 * 109.46858 * 180.02562 * 18 17 16 31 31 H 1.08997 * 109.47688 * 60.00534 * 18 17 16 32 32 H 1.08997 * 109.47071 * 300.00814 * 19 18 17 33 33 H 1.09003 * 109.46831 * 180.02562 * 19 18 17 34 34 H 1.09002 * 109.47010 * 179.97438 * 20 19 18 35 35 H 1.09004 * 109.47265 * 60.00095 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9963 -0.6595 1.1423 5 6 2.0400 -0.7212 -1.2492 6 1 1.6069 -0.2605 -2.1371 7 6 1.6391 -2.1727 -1.1900 8 1 1.9026 -2.7712 -0.3305 9 6 0.9359 -2.7368 -2.2333 10 7 0.7167 -2.0437 -3.3293 11 14 0.2944 -4.4853 -2.0900 12 1 -0.4230 -4.8532 -3.3371 13 1 1.4336 -5.4149 -1.8812 14 1 -0.6377 -4.5778 -0.9377 15 6 3.5650 -0.6156 -1.3122 16 6 3.9721 0.8580 -1.3723 17 6 5.4972 0.9637 -1.4347 18 6 6.0077 0.2423 -2.6836 19 6 5.6007 -1.2314 -2.6235 20 6 4.0756 -1.3370 -2.5611 21 1 -0.3634 -1.0236 0.0909 22 1 -0.3633 0.5906 0.8411 23 1 -0.3633 0.4331 -0.9320 24 1 0.9869 -1.1133 -3.3769 25 1 3.9982 -1.0763 -0.4244 26 1 3.5390 1.3188 -2.2600 27 1 3.6088 1.3719 -0.4823 28 1 5.9299 0.5032 -0.5466 29 1 5.7872 2.0136 -1.4770 30 1 7.0942 0.3173 -2.7278 31 1 5.5750 0.7029 -3.5717 32 1 6.0334 -1.6919 -1.7354 33 1 5.9648 -1.7453 -3.5131 34 1 3.7856 -2.3869 -2.5188 35 1 3.6428 -0.8764 -3.4492 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257901369.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:40 Heat of formation + Delta-G solvation = -109.461909 kcal Electronic energy + Delta-G solvation = -15505.544088 eV Core-core repulsion = 13029.420003 eV Total energy + Delta-G solvation = -2476.124085 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.29375 -39.68841 -36.21748 -33.41859 -31.61268 -31.41236 -27.83020 -25.59343 -23.54022 -22.68490 -21.46060 -20.52636 -18.60991 -17.11751 -16.53385 -16.10442 -15.63452 -15.44140 -15.03424 -14.88474 -14.48551 -14.34141 -13.46692 -13.42499 -13.03272 -12.91422 -12.87355 -12.60539 -12.41033 -12.00276 -11.95795 -11.93433 -11.56297 -11.38522 -11.11309 -10.94392 -10.75731 -10.31958 -10.18944 -8.49202 -6.14789 1.52932 1.57974 1.77489 2.58270 3.26696 3.79230 3.95415 3.99768 4.08567 4.19028 4.26315 4.32335 4.44861 4.53464 4.69311 4.72034 4.78742 4.83672 4.87046 4.95177 5.08886 5.16648 5.24387 5.29925 5.32402 5.36240 5.45023 5.49731 5.59510 5.74081 5.77767 6.23919 6.31061 6.79473 7.57530 8.90555 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.026243 B = 0.012752 C = 0.009770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.686174 B = 2195.274073 C = 2865.185258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.089 3.911 3 H 0.080 0.920 4 F -0.234 7.234 5 C 0.000 4.000 6 H 0.039 0.961 7 C -0.577 4.577 8 H 0.029 0.971 9 C -0.015 4.015 10 N -0.935 5.935 11 Si 1.095 2.905 12 H -0.285 1.285 13 H -0.279 1.279 14 H -0.277 1.277 15 C -0.069 4.069 16 C -0.117 4.117 17 C -0.113 4.113 18 C -0.112 4.112 19 C -0.117 4.117 20 C -0.087 4.087 21 H 0.047 0.953 22 H 0.070 0.930 23 H 0.061 0.939 24 H 0.260 0.740 25 H 0.038 0.962 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.034 0.966 35 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.558 5.746 2.763 9.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.053 3.947 3 H 0.097 0.903 4 F -0.215 7.215 5 C -0.019 4.019 6 H 0.057 0.943 7 C -0.615 4.615 8 H 0.048 0.952 9 C -0.214 4.214 10 N -0.574 5.574 11 Si 0.920 3.080 12 H -0.211 1.211 13 H -0.205 1.205 14 H -0.203 1.203 15 C -0.088 4.088 16 C -0.154 4.154 17 C -0.150 4.150 18 C -0.149 4.149 19 C -0.154 4.154 20 C -0.125 4.125 21 H 0.067 0.933 22 H 0.089 0.911 23 H 0.080 0.920 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 5.781 4.539 1.954 7.605 hybrid contribution 0.476 0.868 0.820 1.286 sum 6.256 5.408 2.774 8.722 Atomic orbital electron populations 1.22104 0.95037 1.02265 1.01946 1.21920 0.94788 0.94758 0.83262 0.90264 1.92662 1.90553 1.84331 1.53979 1.19626 0.93170 0.95940 0.93202 0.94309 1.21829 1.37479 0.96405 1.05836 0.95229 1.26700 0.94606 1.08049 0.92026 1.70957 1.48887 1.10429 1.27173 0.83192 0.76653 0.72170 0.76001 1.21061 1.20472 1.20255 1.21085 0.96292 0.94732 0.96670 1.21703 0.96877 0.95921 1.00920 1.21505 0.94558 1.00788 0.98144 1.21502 1.00894 0.94501 0.98046 1.21567 0.95004 0.97622 1.01239 1.21198 0.95098 0.99415 0.96759 0.93342 0.91071 0.92018 0.92769 0.94373 0.92885 0.92218 0.92358 0.90403 0.90303 0.92452 0.92515 0.92085 0.94669 0.94973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.24 9.38 71.98 0.67 -5.56 16 2 C 0.09 3.76 3.39 30.59 0.10 3.86 16 3 H 0.08 2.90 6.18 -2.39 -0.01 2.89 16 4 F -0.23 -10.76 16.26 44.97 0.73 -10.03 16 5 C 0.00 -0.01 1.51 -11.54 -0.02 -0.02 16 6 H 0.04 1.99 5.72 -2.39 -0.01 1.98 16 7 C -0.58 -31.37 5.78 25.60 0.15 -31.22 16 8 H 0.03 1.70 7.71 -2.91 -0.02 1.68 16 9 C -0.01 -0.81 5.45 84.66 0.46 -0.35 16 10 N -0.94 -54.41 13.65 21.45 0.29 -54.12 16 11 Si 1.10 50.63 29.91 68.60 2.05 52.68 16 12 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 13 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 14 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 15 C -0.07 -2.90 1.68 -10.80 -0.02 -2.92 16 16 C -0.12 -3.94 4.86 30.60 0.15 -3.80 16 17 C -0.11 -3.10 5.92 30.59 0.18 -2.92 16 18 C -0.11 -3.05 5.92 30.59 0.18 -2.87 16 19 C -0.12 -3.85 5.92 30.59 0.18 -3.66 16 20 C -0.09 -3.69 4.96 30.59 0.15 -3.54 16 21 H 0.05 2.17 7.54 -2.39 -0.02 2.15 16 22 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 23 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 24 H 0.26 15.10 6.28 -92.70 -0.58 14.52 16 25 H 0.04 1.72 7.93 -2.39 -0.02 1.70 16 26 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.06 1.92 6.32 -2.39 -0.02 1.90 16 28 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 1.57 8.14 -2.39 -0.02 1.56 16 32 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.03 1.72 7.22 -2.39 -0.02 1.71 16 35 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -59.81 272.23 6.50 -53.32 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 1.22 Total: 11.16 kcal Atomic # 6 Polarization: -55.20 SS G_CDS: 2.20 Total: -53.00 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.29 Total: -54.12 kcal Atomic # 9 Polarization: -10.76 SS G_CDS: 0.73 Total: -10.03 kcal Atomic # 14 Polarization: 50.63 SS G_CDS: 2.05 Total: 52.68 kcal Total: -59.81 6.50 -53.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257901369.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.146 kcal (2) G-P(sol) polarization free energy of solvation -59.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds