Wall clock time and date at job start Mon Mar 30 2020 03:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47648 * 2 1 4 4 F 1.39905 * 109.46872 * 239.99933 * 2 1 3 5 5 C 1.53010 * 109.47183 * 120.00274 * 2 1 3 6 6 H 1.08994 * 109.46762 * 331.62897 * 5 2 1 7 7 C 1.50703 * 109.46918 * 211.63049 * 5 2 1 8 8 H 1.07995 * 119.99712 * 245.25198 * 7 5 2 9 9 C 1.37880 * 119.99891 * 65.25057 * 7 5 2 10 10 N 1.31514 * 120.00010 * 190.95470 * 9 7 5 11 11 Si 1.86798 * 120.00092 * 10.95483 * 9 7 5 12 12 H 1.48508 * 109.46953 * 84.60946 * 11 9 7 13 13 H 1.48494 * 109.47222 * 204.60815 * 11 9 7 14 14 H 1.48497 * 109.47259 * 324.61042 * 11 9 7 15 15 C 1.52993 * 109.46972 * 91.63036 * 5 2 1 16 16 C 1.53007 * 109.46961 * 174.06778 * 15 5 2 17 17 C 1.53002 * 109.47094 * 179.97438 * 16 15 5 18 18 C 1.52998 * 109.46915 * 299.99779 * 17 16 15 19 19 C 1.53000 * 109.47211 * 60.00457 * 18 17 16 20 20 C 1.53000 * 109.47323 * 294.06385 * 15 5 2 21 21 H 1.08999 * 109.46506 * 297.78454 * 1 2 3 22 22 H 1.08999 * 109.47155 * 57.78355 * 1 2 3 23 23 H 1.08996 * 109.47365 * 177.78460 * 1 2 3 24 24 H 0.97001 * 120.00194 * 180.02562 * 10 9 7 25 25 H 1.09004 * 109.47721 * 54.06831 * 15 5 2 26 26 H 1.09002 * 109.46582 * 299.99769 * 16 15 5 27 27 H 1.08994 * 109.47067 * 60.00008 * 16 15 5 28 28 H 1.09000 * 109.46456 * 179.97438 * 17 16 15 29 29 H 1.09003 * 109.47149 * 59.99852 * 17 16 15 30 30 H 1.08994 * 109.47448 * 300.00106 * 18 17 16 31 31 H 1.09004 * 109.46588 * 180.02562 * 18 17 16 32 32 H 1.09002 * 109.47079 * 179.97438 * 19 18 17 33 33 H 1.09003 * 109.47378 * 59.99605 * 19 18 17 34 34 H 1.08994 * 109.47377 * 300.00403 * 20 15 5 35 35 H 1.09002 * 109.46625 * 60.00446 * 20 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0400 -0.7214 1.2493 6 1 1.3086 -0.6204 2.0511 7 6 3.3481 -0.1112 1.6828 8 1 4.2550 -0.6965 1.6471 9 6 3.3869 1.1942 2.1248 10 7 4.5435 1.7959 2.2976 11 14 1.7966 2.1083 2.4785 12 1 1.3423 1.7959 3.8574 13 1 2.0272 3.5698 2.3524 14 1 0.7562 1.6857 1.5068 15 6 2.2487 -2.2036 0.9328 16 6 2.8969 -2.8952 2.1339 17 6 3.1050 -4.3776 1.8177 18 6 1.7534 -5.0305 1.5215 19 6 1.1052 -4.3390 0.3204 20 6 0.8974 -2.8570 0.6362 21 1 -0.3632 0.4791 0.9092 22 1 -0.3633 0.5479 -0.8694 23 1 -0.3634 -1.0268 -0.0397 24 1 4.5708 2.7142 2.6089 25 1 2.8984 -2.3015 0.0630 26 1 3.8596 -2.4297 2.3451 27 1 2.2473 -2.7973 3.0036 28 1 3.5672 -4.8701 2.6732 29 1 3.7544 -4.4759 0.9477 30 1 1.1040 -4.9322 2.3913 31 1 1.9017 -6.0867 1.2966 32 1 0.1425 -4.8045 0.1091 33 1 1.7546 -4.4373 -0.5495 34 1 0.2478 -2.7591 1.5060 35 1 0.4357 -2.3643 -0.2194 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257901371.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:46 Heat of formation + Delta-G solvation = -81.617542 kcal Electronic energy + Delta-G solvation = -15580.601009 eV Core-core repulsion = 13105.684346 eV Total energy + Delta-G solvation = -2474.916663 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -46.60196 -38.20221 -34.35557 -31.91472 -30.46807 -29.69047 -27.19419 -23.28324 -21.90200 -21.58016 -19.45662 -18.88060 -16.86253 -15.91845 -14.68782 -14.47155 -14.10248 -13.94824 -13.64151 -13.50509 -12.90349 -12.41438 -12.14659 -11.93571 -11.76981 -11.42522 -11.26141 -10.87866 -10.63706 -10.58730 -10.44062 -10.28620 -9.99971 -9.68262 -9.54860 -9.41133 -8.92687 -8.71948 -8.47679 -6.10079 -4.06827 3.23597 3.31834 3.35704 4.38367 5.12866 5.20617 5.28757 5.30191 5.61628 5.71039 5.76336 5.82765 5.89285 6.00618 6.05308 6.08775 6.11123 6.15473 6.25881 6.42746 6.51255 6.57287 6.63174 6.67632 6.73469 6.78101 6.93500 7.05398 7.16358 7.34904 7.50719 7.74093 8.51608 8.97189 9.52381 11.02382 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.032017 B = 0.012167 C = 0.010327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.331331 B = 2300.777813 C = 2710.560455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.087 3.913 3 H 0.074 0.926 4 F -0.223 7.223 5 C -0.001 4.001 6 H 0.036 0.964 7 C -0.511 4.511 8 H 0.078 0.922 9 C 0.071 3.929 10 N -0.895 5.895 11 Si 0.850 3.150 12 H -0.277 1.277 13 H -0.290 1.290 14 H -0.243 1.243 15 C -0.065 4.065 16 C -0.105 4.105 17 C -0.121 4.121 18 C -0.116 4.116 19 C -0.117 4.117 20 C -0.124 4.124 21 H 0.070 0.930 22 H 0.048 0.952 23 H 0.070 0.930 24 H 0.263 0.737 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.870 -8.258 -2.158 11.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.050 3.950 3 H 0.092 0.908 4 F -0.204 7.204 5 C -0.020 4.020 6 H 0.054 0.946 7 C -0.548 4.548 8 H 0.096 0.904 9 C -0.131 4.131 10 N -0.532 5.532 11 Si 0.677 3.323 12 H -0.203 1.203 13 H -0.216 1.216 14 H -0.167 1.167 15 C -0.084 4.084 16 C -0.142 4.142 17 C -0.158 4.158 18 C -0.154 4.154 19 C -0.154 4.154 20 C -0.161 4.161 21 H 0.089 0.911 22 H 0.067 0.933 23 H 0.088 0.912 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.762 -8.095 -2.129 11.416 hybrid contribution -0.743 0.742 0.268 1.083 sum -8.505 -7.354 -1.860 11.397 Atomic orbital electron populations 1.22889 0.97365 1.02729 1.02114 1.22360 0.91742 0.96826 0.84067 0.90805 1.92663 1.90469 1.83533 1.53781 1.19691 0.97874 0.92266 0.92154 0.94639 1.21028 0.93415 0.97298 1.43105 0.90353 1.25029 0.95721 0.97202 0.95169 1.69935 1.24598 1.12552 1.46140 0.87460 0.85725 0.79120 0.79988 1.20316 1.21609 1.16694 1.20904 0.94865 0.94611 0.97993 1.21516 1.02105 0.92817 0.97752 1.21595 0.96396 0.97256 1.00580 1.21519 0.97362 0.98209 0.98295 1.21510 0.99520 0.96407 0.97976 1.21893 0.98717 0.94564 1.00895 0.91102 0.93290 0.91178 0.92692 0.91242 0.90501 0.93086 0.92993 0.92519 0.92536 0.93170 0.93163 0.92348 0.92897 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.47 8.73 37.16 0.32 -3.14 16 2 C 0.09 1.87 2.61 -26.73 -0.07 1.80 16 3 H 0.07 1.73 5.62 -51.93 -0.29 1.44 16 4 F -0.22 -4.97 14.92 2.25 0.03 -4.93 16 5 C 0.00 -0.02 1.05 -91.77 -0.10 -0.11 16 6 H 0.04 0.80 6.58 -51.93 -0.34 0.46 16 7 C -0.51 -13.79 8.13 -34.44 -0.28 -14.07 16 8 H 0.08 2.31 6.76 -52.49 -0.35 1.95 16 9 C 0.07 1.97 5.19 -17.82 -0.09 1.88 16 10 N -0.89 -26.85 13.96 55.43 0.77 -26.08 16 11 Si 0.85 20.07 25.83 -169.99 -4.39 15.68 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.24 -5.14 3.39 56.52 0.19 -4.94 16 15 C -0.07 -1.29 1.38 -90.62 -0.12 -1.42 16 16 C -0.10 -1.97 4.86 -26.73 -0.13 -2.10 16 17 C -0.12 -1.88 5.92 -26.73 -0.16 -2.04 16 18 C -0.12 -1.62 5.92 -26.73 -0.16 -1.77 16 19 C -0.12 -1.69 5.92 -26.76 -0.16 -1.85 16 20 C -0.12 -2.07 4.20 -26.76 -0.11 -2.18 16 21 H 0.07 1.25 6.31 -51.93 -0.33 0.92 16 22 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.07 1.14 4.94 -51.93 -0.26 0.89 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.07 1.50 7.18 -51.93 -0.37 1.12 16 26 H 0.08 1.63 6.37 -51.93 -0.33 1.30 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.11 4.87 -51.93 -0.25 0.86 16 LS Contribution 256.44 15.07 3.86 3.86 Total: -1.00 -28.35 256.44 -6.46 -34.81 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -5.68 Total: 1.66 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: -1.06 Total: -24.99 kcal Atomic # 7 Polarization: -26.85 SS G_CDS: 0.77 Total: -26.08 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.03 Total: -4.93 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.39 Total: 15.68 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.35 -6.46 -34.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257901371.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.812 kcal (2) G-P(sol) polarization free energy of solvation -28.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds