Wall clock time and date at job start Mon Mar 30 2020 03:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46959 * 111.00164 * 2 1 4 4 C 1.53053 * 109.36323 * 183.18972 * 3 2 1 5 5 N 1.46958 * 109.36289 * 301.59950 * 4 3 2 6 6 C 1.46910 * 110.99801 * 183.19068 * 5 4 3 7 7 H 1.09002 * 109.46662 * 300.00191 * 6 5 4 8 8 C 1.50694 * 109.46908 * 59.99829 * 6 5 4 9 9 H 1.07999 * 120.00449 * 5.46751 * 8 6 5 10 10 C 1.37884 * 119.99522 * 185.46803 * 8 6 5 11 11 N 1.31517 * 119.99718 * 185.31753 * 10 8 6 12 12 Si 1.86792 * 120.00370 * 5.31258 * 10 8 6 13 13 H 1.48498 * 109.47313 * 270.00347 * 12 10 8 14 14 H 1.48503 * 109.46874 * 30.00078 * 12 10 8 15 15 H 1.48501 * 109.47373 * 150.00027 * 12 10 8 16 16 C 1.52996 * 109.47099 * 179.97438 * 6 5 4 17 17 O 1.42897 * 109.47211 * 296.25536 * 16 6 5 18 18 C 1.46959 * 110.88243 * 59.32186 * 5 4 3 19 19 C 1.46962 * 111.00130 * 123.80278 * 2 1 3 20 20 H 1.08999 * 109.46777 * 59.99979 * 1 2 3 21 21 H 1.08994 * 109.47112 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46422 * 299.99968 * 1 2 3 23 23 H 1.08993 * 109.48573 * 63.22468 * 3 2 1 24 24 H 1.08999 * 109.50340 * 303.16735 * 3 2 1 25 25 H 1.08995 * 109.48940 * 181.63190 * 4 3 2 26 26 H 1.09000 * 109.48941 * 61.56743 * 4 3 2 27 27 H 0.97002 * 119.99829 * 354.98937 * 11 10 8 28 28 H 1.09010 * 109.46924 * 56.24968 * 16 6 5 29 29 H 1.08994 * 109.47230 * 176.24774 * 16 6 5 30 30 H 0.96701 * 114.00111 * 180.02562 * 17 16 6 31 31 H 1.08998 * 109.48412 * 60.64763 * 18 5 4 32 32 H 1.09000 * 109.48768 * 180.70599 * 18 5 4 33 33 H 1.09000 * 109.48768 * 296.77640 * 19 2 1 34 34 H 1.09001 * 109.48607 * 56.82225 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5235 1.3290 -0.0803 5 7 4.0501 0.5657 1.0597 6 6 5.5192 0.5657 1.0597 7 1 5.8824 0.1120 0.1376 8 6 6.0215 1.9834 1.1539 9 1 5.3237 2.7952 1.2971 10 6 7.3720 2.2440 1.0571 11 7 7.8208 3.4662 1.2434 12 14 8.5642 0.8615 0.6617 13 1 9.0287 0.2322 1.9240 14 1 7.8812 -0.1564 -0.1766 15 1 9.7303 1.4093 -0.0766 16 6 6.0292 -0.2362 2.2587 17 8 5.6261 0.4080 3.4689 18 6 3.5234 -0.8062 1.0597 19 6 1.9957 -0.7633 1.1401 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3632 0.5139 0.8901 23 1 1.6939 1.8773 0.9173 24 1 1.6014 1.9132 -0.8601 25 1 3.9179 2.3447 -0.0513 26 1 3.8254 0.8479 -1.0107 27 1 7.1969 4.1969 1.3766 28 1 5.6119 -1.2428 2.2266 29 1 7.1170 -0.2926 2.2220 30 1 5.9159 -0.0464 4.2718 31 1 3.8253 -1.3116 0.1424 32 1 3.9178 -1.3471 1.9199 33 1 1.6938 -0.2822 2.0704 34 1 1.6010 -1.7789 1.1111 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259713417.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:23 Heat of formation + Delta-G solvation = -25.627128 kcal Electronic energy + Delta-G solvation = -15416.156517 eV Core-core repulsion = 12963.587743 eV Total energy + Delta-G solvation = -2452.568774 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.85773 -36.44291 -34.41396 -32.48545 -30.49365 -29.58546 -26.63716 -24.64692 -23.21881 -22.50275 -20.03921 -19.02394 -17.56011 -16.36981 -15.85731 -14.81069 -14.59907 -14.37458 -14.15540 -13.66889 -13.41350 -13.08214 -12.37312 -12.17617 -11.91038 -11.74427 -11.41762 -11.22152 -10.82535 -10.68826 -10.58398 -10.20636 -10.00856 -9.81962 -8.93112 -8.56357 -8.40069 -8.13365 -7.26831 -6.36807 -3.96705 3.32028 3.38637 3.53237 4.19154 4.48380 4.74456 5.24707 5.30760 5.33505 5.34903 5.54081 5.56500 5.74245 5.83415 5.87398 5.89713 5.94918 6.06038 6.20700 6.24921 6.38182 6.47214 6.57469 6.79010 6.94795 7.25147 7.28124 7.70729 8.00479 8.29944 8.51139 8.65931 9.03989 9.70288 11.04578 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.042504 B = 0.009669 C = 0.008930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.606696 B = 2895.270109 C = 3134.799549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.547 5.547 3 C 0.058 3.942 4 C 0.068 3.932 5 N -0.516 5.516 6 C 0.184 3.816 7 H 0.011 0.989 8 C -0.558 4.558 9 H 0.064 0.936 10 C 0.024 3.976 11 N -0.916 5.916 12 Si 1.050 2.950 13 H -0.286 1.286 14 H -0.282 1.282 15 H -0.287 1.287 16 C 0.080 3.920 17 O -0.534 6.534 18 C 0.049 3.951 19 C 0.061 3.939 20 H 0.064 0.936 21 H 0.063 0.937 22 H 0.022 0.978 23 H 0.039 0.961 24 H 0.071 0.929 25 H 0.091 0.909 26 H 0.028 0.972 27 H 0.267 0.733 28 H 0.017 0.983 29 H 0.030 0.970 30 H 0.349 0.651 31 H 0.028 0.972 32 H 0.075 0.925 33 H 0.039 0.961 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.661 -9.185 -0.891 13.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.272 5.272 3 C -0.070 4.070 4 C -0.060 4.060 5 N -0.241 5.241 6 C 0.077 3.923 7 H 0.028 0.972 8 C -0.597 4.597 9 H 0.083 0.917 10 C -0.180 4.180 11 N -0.552 5.552 12 Si 0.880 3.120 13 H -0.213 1.213 14 H -0.209 1.209 15 H -0.214 1.214 16 C 0.001 3.999 17 O -0.335 6.335 18 C -0.079 4.079 19 C -0.067 4.067 20 H 0.083 0.917 21 H 0.081 0.919 22 H 0.041 0.959 23 H 0.057 0.943 24 H 0.089 0.911 25 H 0.109 0.891 26 H 0.046 0.954 27 H 0.077 0.923 28 H 0.034 0.966 29 H 0.048 0.952 30 H 0.191 0.809 31 H 0.046 0.954 32 H 0.093 0.907 33 H 0.057 0.943 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.312 -9.091 -1.514 12.411 hybrid contribution -1.348 -0.137 0.654 1.505 sum -9.661 -9.228 -0.860 13.388 Atomic orbital electron populations 1.22316 0.88123 1.01433 1.00322 1.62192 1.07015 1.14828 1.43152 1.22245 0.96223 0.88342 1.00227 1.22004 0.91807 1.00498 0.91704 1.62053 1.09728 1.10610 1.41729 1.19831 0.83461 0.98263 0.90761 0.97160 1.21835 0.94279 0.90825 1.52753 0.91740 1.25622 0.97015 1.01225 0.94098 1.70773 1.37938 1.00268 1.46179 0.83945 0.76206 0.75117 0.76728 1.21283 1.20877 1.21360 1.22648 0.96372 0.93085 0.87755 1.86810 1.79341 1.53362 1.13964 1.22199 0.93452 0.92297 0.99996 1.22130 0.95548 0.97309 0.91689 0.91714 0.91854 0.95937 0.94320 0.91102 0.89088 0.95396 0.92257 0.96555 0.95179 0.80886 0.95368 0.90713 0.94271 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.60 60.06 0.58 0.90 16 2 N -0.55 -8.65 4.97 -242.75 -1.21 -9.86 16 3 C 0.06 0.99 5.62 -3.76 -0.02 0.96 16 4 C 0.07 1.41 5.38 -3.76 -0.02 1.39 16 5 N -0.52 -11.39 4.50 -227.88 -1.03 -12.41 16 6 C 0.18 4.52 1.43 -68.86 -0.10 4.42 16 7 H 0.01 0.28 6.64 -51.93 -0.34 -0.07 16 8 C -0.56 -15.93 7.67 -34.44 -0.26 -16.19 16 9 H 0.06 2.02 7.15 -52.49 -0.38 1.65 16 10 C 0.02 0.70 5.43 -17.82 -0.10 0.61 16 11 N -0.92 -28.62 13.70 55.43 0.76 -27.86 16 12 Si 1.05 25.59 25.31 -169.99 -4.30 21.29 16 13 H -0.29 -6.61 6.80 56.52 0.38 -6.23 16 14 H -0.28 -6.39 6.36 56.52 0.36 -6.03 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 C 0.08 1.77 5.93 37.16 0.22 1.99 16 17 O -0.53 -12.03 13.10 -35.23 -0.46 -12.49 16 18 C 0.05 0.91 5.24 -3.77 -0.02 0.89 16 19 C 0.06 0.98 5.62 -3.77 -0.02 0.96 16 20 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 21 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 22 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.09 2.06 6.48 -51.93 -0.34 1.73 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.27 8.37 8.72 -40.82 -0.36 8.02 16 28 H 0.02 0.32 6.07 -51.92 -0.32 0.00 16 29 H 0.03 0.68 4.40 -51.93 -0.23 0.45 16 30 H 0.35 5.82 9.12 45.56 0.42 6.24 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 1.32 5.98 -51.93 -0.31 1.01 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 LS Contribution 261.55 15.07 3.94 3.94 Total: -1.00 -32.42 261.55 -6.55 -38.96 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -4.51 Total: 2.50 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 0.26 Total: -4.07 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: -1.47 Total: -50.13 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.46 Total: -12.49 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -4.30 Total: 21.29 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -32.42 -6.55 -38.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259713417.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.337 kcal (2) G-P(sol) polarization free energy of solvation -32.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds