Wall clock time and date at job start Mon Mar 30 2020 03:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46959 * 111.00164 * 2 1 4 4 C 1.53053 * 109.36323 * 183.18972 * 3 2 1 5 5 N 1.46958 * 109.36289 * 301.59950 * 4 3 2 6 6 C 1.46910 * 110.99801 * 183.19068 * 5 4 3 7 7 H 1.09002 * 109.46662 * 300.00191 * 6 5 4 8 8 C 1.50694 * 109.46908 * 59.99829 * 6 5 4 9 9 H 1.07999 * 120.00449 * 5.46751 * 8 6 5 10 10 C 1.37884 * 119.99522 * 185.46803 * 8 6 5 11 11 N 1.31517 * 119.99718 * 185.31753 * 10 8 6 12 12 Si 1.86792 * 120.00370 * 5.31258 * 10 8 6 13 13 H 1.48498 * 109.47313 * 270.00347 * 12 10 8 14 14 H 1.48503 * 109.46874 * 30.00078 * 12 10 8 15 15 H 1.48501 * 109.47373 * 150.00027 * 12 10 8 16 16 C 1.52996 * 109.47099 * 179.97438 * 6 5 4 17 17 O 1.42897 * 109.47211 * 296.25536 * 16 6 5 18 18 C 1.46959 * 110.88243 * 59.32186 * 5 4 3 19 19 C 1.46962 * 111.00130 * 123.80278 * 2 1 3 20 20 H 1.08999 * 109.46777 * 59.99979 * 1 2 3 21 21 H 1.08994 * 109.47112 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46422 * 299.99968 * 1 2 3 23 23 H 1.08993 * 109.48573 * 63.22468 * 3 2 1 24 24 H 1.08999 * 109.50340 * 303.16735 * 3 2 1 25 25 H 1.08995 * 109.48940 * 181.63190 * 4 3 2 26 26 H 1.09000 * 109.48941 * 61.56743 * 4 3 2 27 27 H 0.97002 * 119.99829 * 354.98937 * 11 10 8 28 28 H 1.09010 * 109.46924 * 56.24968 * 16 6 5 29 29 H 1.08994 * 109.47230 * 176.24774 * 16 6 5 30 30 H 0.96701 * 114.00111 * 180.02562 * 17 16 6 31 31 H 1.08998 * 109.48412 * 60.64763 * 18 5 4 32 32 H 1.09000 * 109.48768 * 180.70599 * 18 5 4 33 33 H 1.09000 * 109.48768 * 296.77640 * 19 2 1 34 34 H 1.09001 * 109.48607 * 56.82225 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5235 1.3290 -0.0803 5 7 4.0501 0.5657 1.0597 6 6 5.5192 0.5657 1.0597 7 1 5.8824 0.1120 0.1376 8 6 6.0215 1.9834 1.1539 9 1 5.3237 2.7952 1.2971 10 6 7.3720 2.2440 1.0571 11 7 7.8208 3.4662 1.2434 12 14 8.5642 0.8615 0.6617 13 1 9.0287 0.2322 1.9240 14 1 7.8812 -0.1564 -0.1766 15 1 9.7303 1.4093 -0.0766 16 6 6.0292 -0.2362 2.2587 17 8 5.6261 0.4080 3.4689 18 6 3.5234 -0.8062 1.0597 19 6 1.9957 -0.7633 1.1401 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3632 0.5139 0.8901 23 1 1.6939 1.8773 0.9173 24 1 1.6014 1.9132 -0.8601 25 1 3.9179 2.3447 -0.0513 26 1 3.8254 0.8479 -1.0107 27 1 7.1969 4.1969 1.3766 28 1 5.6119 -1.2428 2.2266 29 1 7.1170 -0.2926 2.2220 30 1 5.9159 -0.0464 4.2718 31 1 3.8253 -1.3116 0.1424 32 1 3.9178 -1.3471 1.9199 33 1 1.6938 -0.2822 2.0704 34 1 1.6010 -1.7789 1.1111 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259713417.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:23 Heat of formation + Delta-G solvation = -54.879050 kcal Electronic energy + Delta-G solvation = -15417.424975 eV Core-core repulsion = 12963.587743 eV Total energy + Delta-G solvation = -2453.837233 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.36256 -38.05738 -36.03667 -34.59882 -31.94494 -31.31206 -28.05077 -26.54251 -24.59048 -24.07656 -21.79420 -20.60700 -19.66347 -18.16311 -17.42874 -16.23368 -15.98243 -15.78910 -15.71186 -15.28416 -15.19180 -14.77784 -14.02782 -13.85338 -13.40848 -13.24881 -12.92058 -12.75096 -12.45662 -12.31331 -12.19624 -11.83687 -11.79789 -11.42605 -10.84056 -10.66523 -10.43152 -9.37733 -8.98030 -8.69896 -6.30000 1.36924 1.48934 1.63587 2.46808 2.97850 3.09471 3.16040 3.71022 3.96438 4.09850 4.16204 4.29994 4.35928 4.41817 4.52890 4.60754 4.62691 4.68525 4.77561 4.83664 4.92871 4.96168 4.99319 5.09345 5.16290 5.74444 5.98907 6.01679 6.08754 6.25152 6.56209 6.73299 7.18704 7.47856 8.70297 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.042504 B = 0.009669 C = 0.008930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.606696 B = 2895.270109 C = 3134.799549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.554 5.554 3 C 0.069 3.931 4 C 0.070 3.930 5 N -0.534 5.534 6 C 0.181 3.819 7 H 0.007 0.993 8 C -0.553 4.553 9 H 0.016 0.984 10 C -0.032 4.032 11 N -0.950 5.950 12 Si 1.089 2.911 13 H -0.261 1.261 14 H -0.253 1.253 15 H -0.289 1.289 16 C 0.082 3.918 17 O -0.563 6.563 18 C 0.048 3.952 19 C 0.066 3.934 20 H 0.076 0.924 21 H 0.084 0.916 22 H 0.023 0.977 23 H 0.026 0.974 24 H 0.090 0.910 25 H 0.053 0.947 26 H 0.023 0.977 27 H 0.248 0.752 28 H 0.057 0.943 29 H 0.030 0.970 30 H 0.375 0.625 31 H 0.030 0.970 32 H 0.085 0.915 33 H 0.029 0.971 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.670 -12.279 -0.997 16.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.280 5.280 3 C -0.059 4.059 4 C -0.058 4.058 5 N -0.259 5.259 6 C 0.073 3.927 7 H 0.025 0.975 8 C -0.591 4.591 9 H 0.034 0.966 10 C -0.227 4.227 11 N -0.588 5.588 12 Si 0.911 3.089 13 H -0.186 1.186 14 H -0.177 1.177 15 H -0.216 1.216 16 C 0.004 3.996 17 O -0.367 6.367 18 C -0.080 4.080 19 C -0.062 4.062 20 H 0.095 0.905 21 H 0.103 0.897 22 H 0.042 0.958 23 H 0.044 0.956 24 H 0.109 0.891 25 H 0.072 0.928 26 H 0.042 0.958 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.048 0.952 30 H 0.221 0.779 31 H 0.048 0.952 32 H 0.103 0.897 33 H 0.048 0.952 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.367 -12.208 -1.597 15.470 hybrid contribution -1.162 0.871 0.702 1.613 sum -10.529 -11.337 -0.896 15.498 Atomic orbital electron populations 1.22408 0.85569 1.03098 1.00994 1.62205 1.09276 1.13369 1.43102 1.22072 0.93547 0.89819 1.00509 1.21908 0.94395 0.98255 0.91267 1.61989 1.08338 1.13277 1.42325 1.19730 0.85329 0.95667 0.92012 0.97526 1.21936 0.93655 0.92225 1.51301 0.96566 1.27159 0.99532 1.02577 0.93465 1.70921 1.37525 1.00950 1.49368 0.83495 0.74248 0.73073 0.78101 1.18637 1.17728 1.21610 1.22531 0.96402 0.94239 0.86455 1.86735 1.79769 1.54836 1.15362 1.22316 0.95281 0.89916 1.00469 1.22140 0.93745 0.99064 0.91290 0.90503 0.89699 0.95814 0.95598 0.89129 0.92848 0.95833 0.94325 0.92546 0.95231 0.77865 0.95154 0.89671 0.95240 0.87935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.60 127.69 1.23 1.80 16 2 N -0.55 -15.99 4.97 -921.94 -4.58 -20.57 16 3 C 0.07 2.30 5.62 86.31 0.49 2.78 16 4 C 0.07 2.94 5.38 86.31 0.46 3.41 16 5 N -0.53 -23.27 4.50 -874.87 -3.94 -27.21 16 6 C 0.18 8.74 1.43 44.16 0.06 8.80 16 7 H 0.01 0.36 6.64 -2.39 -0.02 0.35 16 8 C -0.55 -32.54 7.67 25.60 0.20 -32.35 16 9 H 0.02 1.08 7.15 -2.91 -0.02 1.06 16 10 C -0.03 -1.88 5.43 84.66 0.46 -1.42 16 11 N -0.95 -61.68 13.70 21.45 0.29 -61.38 16 12 Si 1.09 50.69 25.31 68.60 1.74 52.43 16 13 H -0.26 -11.08 6.80 99.48 0.68 -10.40 16 14 H -0.25 -10.48 6.36 99.48 0.63 -9.84 16 15 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 16 C 0.08 3.42 5.93 71.98 0.43 3.85 16 17 O -0.56 -24.39 13.10 -148.98 -1.95 -26.35 16 18 C 0.05 1.65 5.24 86.31 0.45 2.10 16 19 C 0.07 1.88 5.62 86.31 0.49 2.36 16 20 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 21 H 0.08 1.46 8.13 -2.39 -0.02 1.44 16 22 H 0.02 0.50 8.14 -2.38 -0.02 0.48 16 23 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 25 H 0.05 2.58 6.48 -2.39 -0.02 2.57 16 26 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.25 16.51 8.72 -92.71 -0.81 15.71 16 28 H 0.06 1.92 6.07 -2.38 -0.01 1.91 16 29 H 0.03 1.24 4.40 -2.39 -0.01 1.23 16 30 H 0.38 11.58 9.12 -74.06 -0.68 10.91 16 31 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 2.70 5.98 -2.39 -0.01 2.69 16 33 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.10 2.28 8.13 -2.39 -0.02 2.26 16 Total: -1.00 -72.52 261.55 -3.91 -76.43 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.27 Total: 15.32 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 4.26 Total: -8.68 kcal Atomic # 7 Polarization: -100.94 SS G_CDS: -8.22 Total: -109.16 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -1.95 Total: -26.35 kcal Atomic # 14 Polarization: 50.69 SS G_CDS: 1.74 Total: 52.43 kcal Total: -72.52 -3.91 -76.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259713417.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.551 kcal (2) G-P(sol) polarization free energy of solvation -72.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds