Wall clock time and date at job start Mon Mar 30 2020 03:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80993 * 1 3 3 C 1.76198 * 99.99944 * 2 1 4 4 N 1.29732 * 125.02581 * 179.97438 * 3 2 1 5 5 C 1.33687 * 115.83915 * 180.02562 * 4 3 2 6 6 C 1.41051 * 122.83450 * 179.97438 * 5 4 3 7 7 H 1.07993 * 120.00178 * 173.94256 * 6 5 4 8 8 C 1.39586 * 119.99509 * 353.94603 * 6 5 4 9 9 N 1.31101 * 120.00507 * 6.16739 * 8 6 5 10 10 Si 1.86808 * 119.99835 * 186.16588 * 8 6 5 11 11 H 1.48496 * 109.46855 * 94.98470 * 10 8 6 12 12 H 1.48501 * 109.46968 * 214.98467 * 10 8 6 13 13 H 1.48492 * 109.46700 * 334.97944 * 10 8 6 14 14 C 1.37766 * 114.33725 * 0.02562 * 5 4 3 15 15 C 1.50701 * 125.50597 * 179.97438 * 14 5 4 16 16 S 1.70969 * 108.99048 * 359.97438 * 14 5 4 17 17 H 1.08997 * 109.47298 * 59.99923 * 1 2 3 18 18 H 1.09004 * 109.47081 * 180.02562 * 1 2 3 19 19 H 1.09003 * 109.47057 * 299.98995 * 1 2 3 20 20 H 0.97000 * 120.00450 * 179.97438 * 9 8 6 21 21 H 1.09001 * 109.47144 * 180.02562 * 15 14 5 22 22 H 1.09000 * 109.46850 * 300.01033 * 15 14 5 23 23 H 1.08993 * 109.47468 * 60.01637 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8099 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 7 3.2914 2.2840 0.0005 5 6 3.3104 3.6208 0.0009 6 6 4.5063 4.3687 0.0020 7 1 4.4710 5.4435 -0.0964 8 6 5.7353 3.7194 0.1301 9 7 5.7881 2.4094 0.1279 10 14 7.3049 4.7171 0.3049 11 1 7.6364 4.8702 1.7442 12 1 8.4163 4.0165 -0.3873 13 1 7.1096 6.0575 -0.3036 14 6 2.0633 4.2063 0.0014 15 6 1.7924 5.6887 0.0025 16 16 0.8726 2.9793 0.0005 17 1 -0.3634 0.5138 -0.8899 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5137 0.8901 20 1 6.6422 1.9583 0.2165 21 1 0.7161 5.8614 0.0030 22 1 2.2327 6.1378 0.8927 23 1 2.2322 6.1391 -0.8873 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259793446.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:15 Heat of formation + Delta-G solvation = 26.373788 kcal Electronic energy + Delta-G solvation = -10209.219484 eV Core-core repulsion = 8275.026530 eV Total energy + Delta-G solvation = -1934.192955 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 215.013 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.71578 -33.19168 -31.20944 -28.82067 -27.46390 -24.31195 -22.61563 -19.46321 -17.08533 -16.15378 -15.36310 -14.86349 -13.88662 -13.70037 -13.11813 -12.94358 -12.34624 -11.87014 -11.73811 -11.67972 -11.45892 -11.25694 -10.61419 -10.45419 -10.02151 -9.55984 -9.41794 -8.35321 -8.05668 -7.78201 -6.65096 -6.56887 -4.37635 2.00564 2.10941 2.28486 3.03745 3.09253 3.13330 3.29873 3.54282 3.98043 4.22410 5.34428 5.37003 5.43557 5.93962 6.32293 6.39037 6.65434 6.66320 7.07671 7.19016 7.53585 8.13354 8.50220 8.83597 9.44900 10.30697 Molecular weight = 215.01amu Principal moments of inertia in cm(-1) A = 0.038283 B = 0.011293 C = 0.008782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.218583 B = 2478.770680 C = 3187.404916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 S -0.035 6.035 3 C 0.029 3.971 4 N -0.374 5.374 5 C 0.231 3.769 6 C -0.423 4.423 7 H 0.088 0.912 8 C 0.069 3.931 9 N -0.747 5.747 10 Si 0.913 3.087 11 H -0.270 1.270 12 H -0.276 1.276 13 H -0.261 1.261 14 C -0.425 4.425 15 C -0.017 4.017 16 S -0.013 6.013 17 H 0.083 0.917 18 H 0.104 0.896 19 H 0.083 0.917 20 H 0.275 0.725 21 H 0.034 0.966 22 H 0.045 0.955 23 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.946 -1.831 0.095 6.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.328 4.328 2 S 0.193 5.807 3 C -0.363 4.363 4 N -0.090 5.090 5 C 0.106 3.894 6 C -0.457 4.457 7 H 0.106 0.894 8 C -0.154 4.154 9 N -0.370 5.370 10 Si 0.737 3.263 11 H -0.195 1.195 12 H -0.201 1.201 13 H -0.185 1.185 14 C -0.548 4.548 15 C -0.077 4.077 16 S 0.231 5.769 17 H 0.102 0.898 18 H 0.123 0.877 19 H 0.102 0.898 20 H 0.086 0.914 21 H 0.053 0.947 22 H 0.064 0.936 23 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.610 -3.329 0.101 6.524 hybrid contribution 0.740 2.010 0.098 2.144 sum -4.870 -1.318 0.199 5.049 Atomic orbital electron populations 1.23646 0.96682 1.06347 1.06153 1.85194 1.03683 0.98283 1.93542 1.28935 0.94776 1.00822 1.11724 1.67670 1.19002 1.10696 1.11657 1.17895 0.92613 0.85038 0.93805 1.18954 0.88413 0.94498 1.43844 0.89385 1.26031 1.01005 0.95114 0.93232 1.70152 1.26951 1.08372 1.31494 0.86226 0.80399 0.80524 0.79159 1.19485 1.20146 1.18512 1.23965 0.93752 0.98298 1.38774 1.19414 0.98078 0.90130 1.00072 1.82480 1.14832 1.00658 1.78908 0.89760 0.87702 0.89774 0.91397 0.94659 0.93597 0.93691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 9.46 101.05 0.96 -1.24 14 2 S -0.04 -0.68 22.96 -107.50 -2.47 -3.15 14 3 C 0.03 0.70 7.75 51.88 0.40 1.11 14 4 N -0.37 -10.58 8.53 -11.17 -0.10 -10.67 14 5 C 0.23 6.54 6.46 -86.16 -0.56 5.98 14 6 C -0.42 -11.71 8.95 -38.01 -0.34 -12.05 14 7 H 0.09 2.30 7.37 -52.49 -0.39 1.91 14 8 C 0.07 1.82 5.48 -17.36 -0.10 1.73 14 9 N -0.75 -20.70 11.71 55.53 0.65 -20.05 14 10 Si 0.91 19.30 29.56 -169.99 -5.03 14.28 14 11 H -0.27 -5.63 7.11 56.52 0.40 -5.22 14 12 H -0.28 -5.71 7.11 56.52 0.40 -5.31 14 13 H -0.26 -5.39 7.11 56.52 0.40 -4.99 14 14 C -0.43 -10.76 6.47 -34.48 -0.22 -10.98 14 15 C -0.02 -0.37 9.56 36.01 0.34 -0.03 14 16 S -0.01 -0.30 21.56 -107.50 -2.32 -2.61 14 17 H 0.08 1.15 7.99 -51.92 -0.42 0.74 14 18 H 0.10 1.12 8.14 -51.91 -0.42 0.69 14 19 H 0.08 1.15 7.99 -51.91 -0.42 0.74 14 20 H 0.28 6.94 8.30 -40.82 -0.34 6.60 14 21 H 0.03 0.67 8.14 -51.93 -0.42 0.24 14 22 H 0.05 0.95 8.14 -51.93 -0.42 0.53 14 23 H 0.04 0.93 8.14 -51.93 -0.42 0.51 14 LS Contribution 234.01 15.07 3.53 3.53 Total: -1.00 -30.44 234.01 -7.28 -37.73 By element: Atomic # 1 Polarization: -1.52 SS G_CDS: -2.04 Total: -3.56 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: 0.49 Total: -15.49 kcal Atomic # 7 Polarization: -31.27 SS G_CDS: 0.55 Total: -30.72 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.28 kcal Atomic # 16 Polarization: -0.98 SS G_CDS: -4.79 Total: -5.77 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -30.44 -7.28 -37.73 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259793446.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.102 kcal (2) G-P(sol) polarization free energy of solvation -30.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds