Wall clock time and date at job start Mon Mar 30 2020 02:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99748 * 2 1 4 4 H 1.48504 * 109.47114 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47243 * 300.00294 * 3 2 1 6 6 H 1.48506 * 109.47064 * 60.00383 * 3 2 1 7 7 C 1.37871 * 120.00536 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00563 * 175.13949 * 7 2 1 9 9 C 1.50704 * 119.99838 * 355.41105 * 7 2 1 10 10 C 1.53003 * 110.27095 * 63.03009 * 9 7 2 11 11 N 1.46899 * 109.46983 * 64.05573 * 10 9 7 12 12 C 1.54598 * 110.31272 * 185.11489 * 9 7 2 13 13 C 1.54935 * 102.91974 * 96.96092 * 12 9 7 14 14 N 1.48539 * 103.22471 * 37.41556 * 13 12 9 15 15 C 1.46905 * 111.00029 * 200.27737 * 14 13 12 16 16 C 1.53004 * 109.46924 * 290.12879 * 15 14 13 17 17 O 1.42900 * 109.47134 * 65.00106 * 16 15 14 18 18 C 1.47899 * 105.82275 * 320.79099 * 14 13 12 19 19 H 0.96997 * 120.00254 * 359.97438 * 1 2 3 20 20 H 1.08995 * 109.47695 * 184.05712 * 10 9 7 21 21 H 1.09008 * 109.47074 * 304.06141 * 10 9 7 22 22 H 1.00894 * 111.00376 * 56.05199 * 11 10 9 23 23 H 1.00905 * 111.00016 * 180.02562 * 11 10 9 24 24 H 1.09002 * 110.72465 * 215.32173 * 12 9 7 25 25 H 1.09003 * 110.72170 * 338.60770 * 12 9 7 26 26 H 1.09000 * 110.66673 * 155.85052 * 13 12 9 27 27 H 1.09005 * 110.67028 * 278.81731 * 13 12 9 28 28 H 1.09000 * 109.46902 * 50.12492 * 15 14 13 29 29 H 1.08995 * 109.47246 * 170.12714 * 15 14 13 30 30 H 1.08995 * 109.47044 * 184.99680 * 16 15 14 31 31 H 1.08994 * 109.47305 * 305.00137 * 16 15 14 32 32 H 0.96703 * 113.99855 * 179.97438 * 17 16 15 33 33 H 1.09003 * 109.92013 * 265.97877 * 18 14 13 34 34 H 1.09002 * 109.91756 * 144.68033 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0817 -1.1956 -0.0798 9 6 1.2547 -2.4971 0.1033 10 6 0.3395 -2.6801 -1.1091 11 7 1.1548 -2.7851 -2.3266 12 6 2.2453 -3.6791 0.2110 13 6 2.3147 -3.9349 1.7375 14 7 0.9180 -3.6999 2.1853 15 6 0.8668 -3.4237 3.6272 16 6 1.1993 -4.6999 4.4030 17 8 2.5513 -5.0795 4.1386 18 6 0.4346 -2.5395 1.4060 19 1 -0.4850 0.8400 0.0004 20 1 -0.2488 -3.5894 -0.9863 21 1 -0.3291 -1.8232 -1.1923 22 1 1.8277 -3.5327 -2.2479 23 1 0.5730 -2.9062 -3.1420 24 1 1.8586 -4.5551 -0.3097 25 1 3.2242 -3.3987 -0.1779 26 1 2.6165 -4.9621 1.9421 27 1 2.9978 -3.2322 2.2148 28 1 1.5923 -2.6487 3.8747 29 1 -0.1333 -3.0846 3.8970 30 1 1.0750 -4.5189 5.4706 31 1 0.5292 -5.5005 4.0898 32 1 2.8316 -5.8824 4.5990 33 1 0.5895 -1.6212 1.9724 34 1 -0.6235 -2.6624 1.1747 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259899887.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:51 Heat of formation + Delta-G solvation = -43.398061 kcal Electronic energy + Delta-G solvation = -15428.565317 eV Core-core repulsion = 12975.225937 eV Total energy + Delta-G solvation = -2453.339380 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.46723 -36.51531 -34.04397 -31.95791 -30.76650 -27.82432 -27.47865 -24.46270 -22.60208 -21.88466 -19.84011 -18.62281 -17.20823 -16.10571 -15.48006 -14.62736 -14.48891 -14.27959 -13.43746 -13.30413 -12.91045 -12.87990 -12.09828 -11.81824 -11.61555 -11.32400 -10.92140 -10.82686 -10.55645 -10.32090 -10.16343 -10.05066 -9.65881 -9.46246 -8.94587 -8.78687 -8.36194 -7.43407 -7.34290 -5.87455 -3.88703 3.36855 3.44966 3.49567 4.54114 4.55948 4.88373 5.41473 5.45365 5.57973 5.69678 5.79917 6.04598 6.05890 6.28945 6.34182 6.43600 6.64134 6.74390 6.83319 6.99988 7.08996 7.19159 7.32118 7.57668 7.79014 7.83753 7.89038 8.06301 8.15294 8.38155 8.57833 8.69459 9.07800 9.72867 11.18286 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.029980 B = 0.010841 C = 0.009310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.736293 B = 2582.145684 C = 3006.662343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.064 3.936 3 Si 0.888 3.112 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.289 1.289 7 C -0.473 4.473 8 H 0.053 0.947 9 C 0.072 3.928 10 C 0.080 3.920 11 N -0.832 5.832 12 C -0.118 4.118 13 C 0.059 3.941 14 N -0.528 5.528 15 C 0.047 3.953 16 C 0.083 3.917 17 O -0.565 6.565 18 C 0.067 3.933 19 H 0.256 0.744 20 H -0.020 1.020 21 H 0.099 0.901 22 H 0.320 0.680 23 H 0.315 0.685 24 H 0.041 0.959 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.036 0.964 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.039 0.961 31 H 0.049 0.951 32 H 0.367 0.633 33 H 0.048 0.952 34 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.963 -8.331 5.453 10.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.136 4.136 3 Si 0.717 3.283 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.215 1.215 7 C -0.512 4.512 8 H 0.071 0.929 9 C 0.071 3.929 10 C -0.051 4.051 11 N -0.358 5.358 12 C -0.156 4.156 13 C -0.069 4.069 14 N -0.252 5.252 15 C -0.083 4.083 16 C 0.005 3.995 17 O -0.369 6.369 18 C -0.060 4.060 19 H 0.066 0.934 20 H -0.002 1.002 21 H 0.117 0.883 22 H 0.131 0.869 23 H 0.125 0.875 24 H 0.060 0.940 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.213 0.787 33 H 0.067 0.933 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.689 -7.351 5.189 9.024 hybrid contribution 0.395 0.287 0.504 0.702 sum 1.084 -7.064 5.693 9.137 Atomic orbital electron populations 1.69853 1.05672 1.25897 1.51828 1.24847 0.94779 0.98678 0.95338 0.86605 0.80225 0.84332 0.77174 1.20034 1.21253 1.21539 1.20978 0.92597 0.89491 1.48116 0.92895 1.18898 0.91216 0.92816 0.90015 1.21977 0.95231 0.97823 0.90029 1.58617 1.20436 1.52214 1.04563 1.22638 1.00196 0.98175 0.94624 1.22993 0.89074 0.99748 0.95093 1.64856 1.19537 1.38771 1.02086 1.22219 1.00526 0.94836 0.90681 1.22227 0.83089 0.97419 0.96784 1.86667 1.29286 1.47861 1.73105 1.22861 0.98289 0.89578 0.95321 0.93400 1.00206 0.88265 0.86881 0.87478 0.94015 0.92259 0.91313 0.94525 0.94374 0.90357 0.94282 0.93275 0.78719 0.93346 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.95 10.50 55.43 0.58 -24.37 16 2 C 0.06 1.75 4.88 -17.82 -0.09 1.66 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.47 -12.91 7.61 -34.44 -0.26 -13.17 16 8 H 0.05 1.49 7.51 -52.48 -0.39 1.10 16 9 C 0.07 1.75 0.42 -154.30 -0.06 1.69 16 10 C 0.08 1.91 5.28 -3.82 -0.02 1.89 16 11 N -0.83 -17.82 9.32 -10.37 -0.10 -17.92 16 12 C -0.12 -2.57 5.11 -24.87 -0.13 -2.69 16 13 C 0.06 1.22 5.18 -1.90 -0.01 1.21 16 14 N -0.53 -10.99 5.26 -230.44 -1.21 -12.20 16 15 C 0.05 0.83 5.26 -3.82 -0.02 0.81 16 16 C 0.08 1.17 7.35 37.16 0.27 1.44 16 17 O -0.56 -8.09 10.89 -35.23 -0.38 -8.48 16 18 C 0.07 1.61 5.11 -2.76 -0.01 1.60 16 19 H 0.26 6.94 8.31 -40.82 -0.34 6.61 16 20 H -0.02 -0.47 8.14 -51.93 -0.42 -0.89 16 21 H 0.10 2.67 6.13 -51.92 -0.32 2.35 16 22 H 0.32 6.32 7.64 -39.29 -0.30 6.02 16 23 H 0.32 5.91 9.08 -39.29 -0.36 5.56 16 24 H 0.04 0.85 7.54 -51.93 -0.39 0.46 16 25 H 0.06 1.30 7.64 -51.93 -0.40 0.90 16 26 H 0.07 1.33 6.79 -51.93 -0.35 0.98 16 27 H 0.04 0.82 7.86 -51.93 -0.41 0.41 16 28 H 0.04 0.74 7.90 -51.93 -0.41 0.33 16 29 H 0.08 1.31 8.11 -51.93 -0.42 0.89 16 30 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.37 3.34 9.12 45.56 0.42 3.75 16 33 H 0.05 1.28 6.80 -51.93 -0.35 0.92 16 34 H 0.05 1.33 7.69 -51.93 -0.40 0.94 16 LS Contribution 265.57 15.07 4.00 4.00 Total: -1.00 -29.90 265.57 -6.95 -36.85 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -4.49 Total: 10.82 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -0.33 Total: -5.57 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.73 Total: -54.50 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -0.38 Total: -8.48 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.90 -6.95 -36.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259899887.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.546 kcal (2) G-P(sol) polarization free energy of solvation -29.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds