Wall clock time and date at job start Mon Mar 30 2020 02:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99748 * 2 1 4 4 H 1.48504 * 109.47114 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47243 * 300.00294 * 3 2 1 6 6 H 1.48506 * 109.47064 * 60.00383 * 3 2 1 7 7 C 1.37871 * 120.00536 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00563 * 175.13949 * 7 2 1 9 9 C 1.50704 * 119.99838 * 355.41105 * 7 2 1 10 10 C 1.53003 * 110.27095 * 63.03009 * 9 7 2 11 11 N 1.46899 * 109.46983 * 64.05573 * 10 9 7 12 12 C 1.54598 * 110.31272 * 185.11489 * 9 7 2 13 13 C 1.54935 * 102.91974 * 96.96092 * 12 9 7 14 14 N 1.48539 * 103.22471 * 37.41556 * 13 12 9 15 15 C 1.46905 * 111.00029 * 200.27737 * 14 13 12 16 16 C 1.53004 * 109.46924 * 290.12879 * 15 14 13 17 17 O 1.42900 * 109.47134 * 65.00106 * 16 15 14 18 18 C 1.47899 * 105.82275 * 320.79099 * 14 13 12 19 19 H 0.96997 * 120.00254 * 359.97438 * 1 2 3 20 20 H 1.08995 * 109.47695 * 184.05712 * 10 9 7 21 21 H 1.09008 * 109.47074 * 304.06141 * 10 9 7 22 22 H 1.00894 * 111.00376 * 56.05199 * 11 10 9 23 23 H 1.00905 * 111.00016 * 180.02562 * 11 10 9 24 24 H 1.09002 * 110.72465 * 215.32173 * 12 9 7 25 25 H 1.09003 * 110.72170 * 338.60770 * 12 9 7 26 26 H 1.09000 * 110.66673 * 155.85052 * 13 12 9 27 27 H 1.09005 * 110.67028 * 278.81731 * 13 12 9 28 28 H 1.09000 * 109.46902 * 50.12492 * 15 14 13 29 29 H 1.08995 * 109.47246 * 170.12714 * 15 14 13 30 30 H 1.08995 * 109.47044 * 184.99680 * 16 15 14 31 31 H 1.08994 * 109.47305 * 305.00137 * 16 15 14 32 32 H 0.96703 * 113.99855 * 179.97438 * 17 16 15 33 33 H 1.09003 * 109.92013 * 265.97877 * 18 14 13 34 34 H 1.09002 * 109.91756 * 144.68033 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0817 -1.1956 -0.0798 9 6 1.2547 -2.4971 0.1033 10 6 0.3395 -2.6801 -1.1091 11 7 1.1548 -2.7851 -2.3266 12 6 2.2453 -3.6791 0.2110 13 6 2.3147 -3.9349 1.7375 14 7 0.9180 -3.6999 2.1853 15 6 0.8668 -3.4237 3.6272 16 6 1.1993 -4.6999 4.4030 17 8 2.5513 -5.0795 4.1386 18 6 0.4346 -2.5395 1.4060 19 1 -0.4850 0.8400 0.0004 20 1 -0.2488 -3.5894 -0.9863 21 1 -0.3291 -1.8232 -1.1923 22 1 1.8277 -3.5327 -2.2479 23 1 0.5730 -2.9062 -3.1420 24 1 1.8586 -4.5551 -0.3097 25 1 3.2242 -3.3987 -0.1779 26 1 2.6165 -4.9621 1.9421 27 1 2.9978 -3.2322 2.2148 28 1 1.5923 -2.6487 3.8747 29 1 -0.1333 -3.0846 3.8970 30 1 1.0750 -4.5189 5.4706 31 1 0.5292 -5.5005 4.0898 32 1 2.8316 -5.8824 4.5990 33 1 0.5895 -1.6212 1.9724 34 1 -0.6235 -2.6624 1.1747 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259899887.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:51 Heat of formation + Delta-G solvation = -68.956952 kcal Electronic energy + Delta-G solvation = -15429.673633 eV Core-core repulsion = 12975.225937 eV Total energy + Delta-G solvation = -2454.447696 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.17441 -37.78034 -35.71911 -33.98050 -32.37040 -29.67406 -29.01166 -26.48522 -24.40060 -23.34054 -21.48668 -20.55926 -18.32395 -18.05776 -17.00786 -16.57975 -16.20329 -16.00539 -15.05764 -14.91037 -14.58013 -14.28907 -13.98055 -13.54704 -13.24371 -13.07611 -12.82403 -12.77231 -12.29386 -12.12332 -11.99905 -11.62138 -11.34152 -10.92592 -10.77343 -10.68029 -10.44521 -9.19216 -9.10720 -7.97154 -6.03702 1.38977 1.42707 1.51677 2.49133 3.25322 3.35379 3.55355 4.02396 4.12529 4.34429 4.38859 4.46052 4.52190 4.72337 4.77852 4.83575 4.89954 5.00508 5.04373 5.18220 5.31404 5.38308 5.43221 5.69229 5.77212 6.04888 6.15998 6.36511 6.47896 6.75776 6.96756 7.03396 7.04838 7.59315 9.06116 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.029980 B = 0.010841 C = 0.009310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.736293 B = 2582.145684 C = 3006.662343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.023 3.977 3 Si 0.938 3.062 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.484 4.484 8 H 0.038 0.962 9 C 0.061 3.939 10 C 0.090 3.910 11 N -0.838 5.838 12 C -0.111 4.111 13 C 0.069 3.931 14 N -0.524 5.524 15 C 0.038 3.962 16 C 0.092 3.908 17 O -0.587 6.587 18 C 0.081 3.919 19 H 0.255 0.745 20 H -0.013 1.013 21 H 0.067 0.933 22 H 0.332 0.668 23 H 0.332 0.668 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.091 0.909 27 H 0.016 0.984 28 H 0.017 0.983 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.392 0.608 33 H 0.015 0.985 34 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.430 -9.592 5.983 11.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.175 4.175 3 Si 0.766 3.234 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.059 3.941 10 C -0.041 4.041 11 N -0.367 5.367 12 C -0.150 4.150 13 C -0.058 4.058 14 N -0.248 5.248 15 C -0.090 4.090 16 C 0.015 3.985 17 O -0.395 6.395 18 C -0.048 4.048 19 H 0.064 0.936 20 H 0.005 0.995 21 H 0.085 0.915 22 H 0.145 0.855 23 H 0.143 0.857 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.109 0.891 27 H 0.034 0.966 28 H 0.036 0.964 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.241 0.759 33 H 0.033 0.967 34 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.169 -8.640 5.726 10.431 hybrid contribution 0.262 0.653 0.352 0.787 sum 1.431 -7.987 6.078 10.138 Atomic orbital electron populations 1.69966 1.06419 1.26201 1.52287 1.25413 0.95504 1.01130 0.95472 0.85821 0.79152 0.81412 0.77042 1.20009 1.21196 1.21246 1.21142 0.92018 0.91065 1.47980 0.94371 1.18963 0.91870 0.92809 0.90419 1.21686 0.94901 0.96719 0.90776 1.58484 1.20795 1.53091 1.04364 1.22566 0.99209 0.97555 0.95628 1.22921 0.88517 1.00320 0.94089 1.64862 1.19439 1.36863 1.03663 1.22401 1.00582 0.96839 0.89213 1.22095 0.83305 0.95431 0.97700 1.86579 1.29250 1.49632 1.74054 1.22555 0.97513 0.89371 0.95335 0.93598 0.99463 0.91461 0.85533 0.85680 0.92399 0.92680 0.89124 0.96569 0.96436 0.89656 0.91199 0.92271 0.75858 0.96664 0.94197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.56 10.50 21.44 0.23 -51.33 16 2 C 0.02 1.28 4.88 84.65 0.41 1.69 16 3 Si 0.94 45.23 29.54 68.60 2.03 47.26 16 4 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 7 C -0.48 -26.58 7.61 25.60 0.19 -26.39 16 8 H 0.04 2.16 7.51 -2.91 -0.02 2.14 16 9 C 0.06 2.96 0.42 -52.05 -0.02 2.94 16 10 C 0.09 4.28 5.28 86.30 0.46 4.74 16 11 N -0.84 -34.98 9.32 -186.71 -1.74 -36.72 16 12 C -0.11 -4.70 5.11 31.80 0.16 -4.54 16 13 C 0.07 2.77 5.18 86.65 0.45 3.22 16 14 N -0.52 -21.32 5.26 -882.99 -4.65 -25.97 16 15 C 0.04 1.33 5.26 86.30 0.45 1.79 16 16 C 0.09 2.33 7.35 71.98 0.53 2.86 16 17 O -0.59 -15.08 10.89 -148.98 -1.62 -16.70 16 18 C 0.08 3.91 5.11 86.45 0.44 4.35 16 19 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 20 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 21 H 0.07 3.66 6.13 -2.38 -0.01 3.64 16 22 H 0.33 12.53 7.64 -89.70 -0.68 11.85 16 23 H 0.33 11.97 9.08 -89.69 -0.81 11.15 16 24 H 0.06 2.24 7.54 -2.39 -0.02 2.22 16 25 H 0.05 2.35 7.64 -2.39 -0.02 2.33 16 26 H 0.09 3.26 6.79 -2.39 -0.02 3.25 16 27 H 0.02 0.71 7.86 -2.38 -0.02 0.69 16 28 H 0.02 0.67 7.90 -2.39 -0.02 0.65 16 29 H 0.09 2.79 8.11 -2.39 -0.02 2.77 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.39 5.73 9.12 -74.06 -0.68 5.06 16 33 H 0.01 0.81 6.80 -2.39 -0.02 0.80 16 34 H 0.04 2.01 7.69 -2.39 -0.02 1.99 16 Total: -1.00 -63.46 265.57 -3.74 -67.20 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: -1.06 Total: 25.60 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: 3.08 Total: -9.33 kcal Atomic # 7 Polarization: -107.86 SS G_CDS: -6.16 Total: -114.03 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -1.62 Total: -16.70 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -63.46 -3.74 -67.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259899887.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.754 kcal (2) G-P(sol) polarization free energy of solvation -63.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds