Wall clock time and date at job start Mon Mar 30 2020 03:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34543 * 126.15435 * 2 1 4 4 C 1.30396 * 108.68284 * 180.26459 * 3 2 1 5 5 Cl 1.73598 * 125.63600 * 180.02562 * 4 3 2 6 6 O 1.34000 * 108.72705 * 0.02562 * 4 3 2 7 7 C 1.34274 * 126.15630 * 180.31317 * 2 1 3 8 8 C 1.50706 * 126.42734 * 359.73292 * 7 2 1 9 9 H 1.08999 * 109.46919 * 0.02562 * 8 7 2 10 10 C 1.52995 * 109.46973 * 240.00014 * 8 7 2 11 11 C 1.50703 * 109.46539 * 120.00116 * 8 7 2 12 12 H 1.07994 * 120.00422 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99382 * 179.97438 * 11 8 7 14 14 N 1.31515 * 119.99942 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99574 * 179.97438 * 13 11 8 16 16 H 1.48496 * 109.47343 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46595 * 120.00363 * 15 13 11 18 18 H 1.48504 * 109.47128 * 239.99781 * 15 13 11 19 19 H 1.09005 * 109.46943 * 269.68327 * 1 2 3 20 20 H 1.08990 * 109.47576 * 29.69084 * 1 2 3 21 21 H 1.09003 * 109.47228 * 149.68939 * 1 2 3 22 22 H 1.09001 * 109.46945 * 60.00200 * 10 8 7 23 23 H 1.08997 * 109.47126 * 179.97438 * 10 8 7 24 24 H 1.08994 * 109.47298 * 300.00306 * 10 8 7 25 25 H 0.97002 * 119.99738 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3008 1.0863 0.0000 4 6 3.5446 0.6949 -0.0057 5 17 4.9329 1.7370 -0.0074 6 8 3.5739 -0.6448 -0.0100 7 6 2.2992 -1.0841 -0.0059 8 6 1.8481 -2.5221 -0.0081 9 1 0.7589 -2.5612 -0.0046 10 6 2.3884 -3.2279 1.2371 11 6 2.3711 -3.2106 -1.2425 12 1 2.9704 -2.6620 -1.9539 13 6 2.0852 -4.5413 -1.4630 14 7 1.3557 -5.2095 -0.5963 15 14 2.7328 -5.3945 -2.9933 16 1 3.5203 -4.4299 -3.8022 17 1 3.6013 -6.5317 -2.5959 18 1 1.5919 -5.9008 -3.7980 19 1 -0.3633 -0.0057 1.0277 20 1 -0.3634 0.8926 -0.5090 21 1 -0.3634 -0.8872 -0.5187 22 1 2.0101 -2.7299 2.1299 23 1 2.0618 -4.2678 1.2358 24 1 3.4776 -3.1888 1.2332 25 1 1.1549 -6.1458 -0.7513 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259998521.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:14 Heat of formation + Delta-G solvation = 6.058255 kcal Electronic energy + Delta-G solvation = -12346.949446 eV Core-core repulsion = 9967.078967 eV Total energy + Delta-G solvation = -2379.870479 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 215.045 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.74008 -36.98716 -34.82199 -34.54807 -31.63503 -29.60219 -26.35593 -25.32007 -22.74258 -21.13726 -19.83127 -16.97547 -16.62006 -16.01789 -14.98925 -14.50969 -13.53775 -12.94454 -12.83199 -12.53812 -12.10946 -11.84514 -11.68360 -11.41501 -11.06363 -10.96511 -10.69345 -10.41076 -10.35549 -10.31654 -9.74411 -9.27715 -8.57578 -7.81805 -6.20182 -4.28778 1.20872 2.02059 3.09570 3.21160 3.29641 3.35278 3.79819 4.30450 5.11354 5.27116 5.42009 5.91982 6.07031 6.21643 6.35752 6.43731 6.66991 6.72456 6.87929 6.94299 7.41288 7.63109 7.84361 8.03999 8.16346 8.71853 9.37335 10.85265 Molecular weight = 215.05amu Principal moments of inertia in cm(-1) A = 0.034952 B = 0.009257 C = 0.008251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.912013 B = 3023.999394 C = 3392.560783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.059 4.059 3 N -0.447 5.447 4 C 0.177 3.823 5 Cl 0.064 6.936 6 O -0.182 6.182 7 C 0.053 3.947 8 C 0.114 3.886 9 H 0.070 0.930 10 C -0.138 4.138 11 C -0.520 4.520 12 H 0.060 0.940 13 C 0.067 3.933 14 N -0.887 5.887 15 Si 0.900 3.100 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.281 1.281 19 H 0.066 0.934 20 H 0.067 0.933 21 H 0.081 0.919 22 H 0.014 0.986 23 H 0.095 0.905 24 H 0.033 0.967 25 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.795 7.579 1.719 7.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.179 4.179 3 N -0.182 5.182 4 C -0.053 4.053 5 Cl 0.091 6.909 6 O -0.068 6.068 7 C -0.001 4.001 8 C 0.095 3.905 9 H 0.088 0.912 10 C -0.196 4.196 11 C -0.558 4.558 12 H 0.078 0.922 13 C -0.135 4.135 14 N -0.525 5.525 15 Si 0.727 3.273 16 H -0.197 1.197 17 H -0.207 1.207 18 H -0.207 1.207 19 H 0.085 0.915 20 H 0.086 0.914 21 H 0.100 0.900 22 H 0.033 0.967 23 H 0.114 0.886 24 H 0.053 0.947 25 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.728 8.088 1.750 8.454 hybrid contribution 0.946 -0.927 -0.820 1.558 sum 2.674 7.161 0.930 7.700 Atomic orbital electron populations 1.20007 0.86326 1.03109 1.02240 1.21383 0.97888 0.86953 1.11658 1.70208 0.98762 1.32137 1.17050 1.25294 0.89790 0.80068 1.10187 1.98405 1.35913 1.59301 1.97267 1.84450 1.32131 1.20775 1.69484 1.24821 0.78057 0.99885 0.97310 1.17830 0.97191 0.79116 0.96359 0.91204 1.21824 0.99248 1.03959 0.94560 1.21016 1.33864 0.95531 1.05359 0.92200 1.24912 0.94676 0.97036 0.96902 1.69861 1.37544 1.09884 1.35175 0.86400 0.78813 0.79469 0.82622 1.19655 1.20729 1.20702 0.91487 0.91429 0.90037 0.96656 0.88608 0.94748 0.92536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.99 10.06 36.01 0.36 -0.63 15 2 C -0.06 -1.22 7.11 -82.80 -0.59 -1.81 15 3 N -0.45 -9.19 11.30 -8.27 -0.09 -9.29 15 4 C 0.18 3.53 9.04 52.15 0.47 4.00 15 5 Cl 0.06 0.97 29.33 -51.86 -1.52 -0.55 15 6 O -0.18 -4.09 10.78 5.06 0.05 -4.03 15 7 C 0.05 1.21 5.83 -35.70 -0.21 1.00 15 8 C 0.11 2.75 2.65 -92.92 -0.25 2.50 15 9 H 0.07 1.70 6.82 -51.93 -0.35 1.35 15 10 C -0.14 -3.23 8.95 37.16 0.33 -2.89 15 11 C -0.52 -13.87 8.55 -34.44 -0.29 -14.16 15 12 H 0.06 1.64 7.74 -52.49 -0.41 1.24 15 13 C 0.07 1.77 5.30 -17.82 -0.09 1.68 15 14 N -0.89 -23.76 11.32 55.43 0.63 -23.13 15 15 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 15 16 H -0.27 -6.27 7.11 56.52 0.40 -5.87 15 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 19 H 0.07 1.00 8.14 -51.93 -0.42 0.57 15 20 H 0.07 1.01 8.14 -51.93 -0.42 0.59 15 21 H 0.08 1.36 7.16 -51.93 -0.37 0.99 15 22 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 15 23 H 0.10 2.39 6.07 -51.93 -0.32 2.08 15 24 H 0.03 0.79 8.14 -51.93 -0.42 0.37 15 25 H 0.26 6.73 8.31 -40.82 -0.34 6.39 15 LS Contribution 239.75 15.07 3.61 3.61 Total: -1.00 -27.57 239.75 -4.88 -32.45 By element: Atomic # 1 Polarization: -2.07 SS G_CDS: -2.27 Total: -4.35 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -0.27 Total: -10.31 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: 0.53 Total: -32.42 kcal Atomic # 8 Polarization: -4.09 SS G_CDS: 0.05 Total: -4.03 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 17 Polarization: 0.97 SS G_CDS: -1.52 Total: -0.55 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -27.57 -4.88 -32.45 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259998521.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.507 kcal (2) G-P(sol) polarization free energy of solvation -27.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds