Wall clock time and date at job start Mon Mar 30 2020 03:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34543 * 126.15435 * 2 1 4 4 C 1.30396 * 108.68284 * 180.26459 * 3 2 1 5 5 Cl 1.73598 * 125.63600 * 180.02562 * 4 3 2 6 6 O 1.34000 * 108.72705 * 0.02562 * 4 3 2 7 7 C 1.34274 * 126.15630 * 180.31317 * 2 1 3 8 8 C 1.50706 * 126.42734 * 359.73292 * 7 2 1 9 9 H 1.08999 * 109.46919 * 0.02562 * 8 7 2 10 10 C 1.52995 * 109.46973 * 240.00014 * 8 7 2 11 11 C 1.50703 * 109.46539 * 120.00116 * 8 7 2 12 12 H 1.07994 * 120.00422 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99382 * 179.97438 * 11 8 7 14 14 N 1.31515 * 119.99942 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99574 * 179.97438 * 13 11 8 16 16 H 1.48496 * 109.47343 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46595 * 120.00363 * 15 13 11 18 18 H 1.48504 * 109.47128 * 239.99781 * 15 13 11 19 19 H 1.09005 * 109.46943 * 269.68327 * 1 2 3 20 20 H 1.08990 * 109.47576 * 29.69084 * 1 2 3 21 21 H 1.09003 * 109.47228 * 149.68939 * 1 2 3 22 22 H 1.09001 * 109.46945 * 60.00200 * 10 8 7 23 23 H 1.08997 * 109.47126 * 179.97438 * 10 8 7 24 24 H 1.08994 * 109.47298 * 300.00306 * 10 8 7 25 25 H 0.97002 * 119.99738 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3008 1.0863 0.0000 4 6 3.5446 0.6949 -0.0057 5 17 4.9329 1.7370 -0.0074 6 8 3.5739 -0.6448 -0.0100 7 6 2.2992 -1.0841 -0.0059 8 6 1.8481 -2.5221 -0.0081 9 1 0.7589 -2.5612 -0.0046 10 6 2.3884 -3.2279 1.2371 11 6 2.3711 -3.2106 -1.2425 12 1 2.9704 -2.6620 -1.9539 13 6 2.0852 -4.5413 -1.4630 14 7 1.3557 -5.2095 -0.5963 15 14 2.7328 -5.3945 -2.9933 16 1 3.5203 -4.4299 -3.8022 17 1 3.6013 -6.5317 -2.5959 18 1 1.5919 -5.9008 -3.7980 19 1 -0.3633 -0.0057 1.0277 20 1 -0.3634 0.8926 -0.5090 21 1 -0.3634 -0.8872 -0.5187 22 1 2.0101 -2.7299 2.1299 23 1 2.0618 -4.2678 1.2358 24 1 3.4776 -3.1888 1.2332 25 1 1.1549 -6.1458 -0.7513 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259998521.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:14 Heat of formation + Delta-G solvation = -11.712710 kcal Electronic energy + Delta-G solvation = -12347.720053 eV Core-core repulsion = 9967.078967 eV Total energy + Delta-G solvation = -2380.641086 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 215.045 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.36854 -38.37726 -36.64553 -36.21937 -33.48757 -31.22849 -27.93154 -27.31245 -24.45460 -22.78068 -21.56987 -18.68113 -18.38007 -17.75637 -16.87589 -16.11656 -15.34391 -14.74817 -14.21812 -14.10138 -13.62471 -13.42381 -13.19857 -13.01262 -12.82766 -12.77792 -12.42760 -12.27942 -12.09884 -11.91938 -11.49557 -11.20719 -10.57118 -9.45089 -8.19761 -6.35195 -0.26968 0.37728 1.39918 1.42650 1.49511 1.54760 2.17457 2.39946 3.08846 3.75784 3.88709 4.24484 4.65190 4.78650 4.83584 4.89413 4.92882 5.00451 5.04254 5.36741 5.46420 5.68890 5.87611 6.12814 6.50405 6.67763 7.33484 8.84613 Molecular weight = 215.05amu Principal moments of inertia in cm(-1) A = 0.034952 B = 0.009257 C = 0.008251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.912013 B = 3023.999394 C = 3392.560783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.050 4.050 3 N -0.457 5.457 4 C 0.180 3.820 5 Cl 0.105 6.895 6 O -0.200 6.200 7 C 0.016 3.984 8 C 0.116 3.884 9 H 0.064 0.936 10 C -0.128 4.128 11 C -0.540 4.540 12 H 0.043 0.957 13 C 0.029 3.971 14 N -0.905 5.905 15 Si 0.956 3.044 16 H -0.276 1.276 17 H -0.276 1.276 18 H -0.273 1.273 19 H 0.088 0.912 20 H 0.086 0.914 21 H 0.078 0.922 22 H 0.035 0.965 23 H 0.077 0.923 24 H 0.025 0.975 25 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.842 8.289 1.532 8.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.169 4.169 3 N -0.192 5.192 4 C -0.050 4.050 5 Cl 0.132 6.868 6 O -0.087 6.087 7 C -0.037 4.037 8 C 0.097 3.903 9 H 0.082 0.918 10 C -0.186 4.186 11 C -0.578 4.578 12 H 0.061 0.939 13 C -0.172 4.172 14 N -0.543 5.543 15 Si 0.781 3.219 16 H -0.201 1.201 17 H -0.201 1.201 18 H -0.198 1.198 19 H 0.106 0.894 20 H 0.105 0.895 21 H 0.096 0.904 22 H 0.054 0.946 23 H 0.096 0.904 24 H 0.044 0.956 25 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.764 8.802 1.570 9.113 hybrid contribution 1.003 -1.032 -0.742 1.619 sum 2.767 7.770 0.828 8.290 Atomic orbital electron populations 1.20157 0.83824 1.03862 1.03839 1.21955 0.99477 0.86301 1.09178 1.70286 0.99037 1.31905 1.17999 1.25969 0.91202 0.79769 1.08084 1.98423 1.33729 1.57655 1.96967 1.84405 1.32311 1.22053 1.69973 1.24528 0.78652 0.99744 1.00762 1.17621 0.96743 0.80302 0.95616 0.91807 1.21676 0.98568 1.02968 0.95377 1.21187 1.34196 0.96150 1.06278 0.93903 1.25558 0.94816 0.97460 0.99352 1.69937 1.37919 1.10212 1.36251 0.85537 0.78429 0.78332 0.79581 1.20113 1.20136 1.19796 0.89381 0.89537 0.90364 0.94604 0.90435 0.95622 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.88 10.06 71.24 0.72 -1.17 15 2 C -0.05 -1.99 7.11 41.24 0.29 -1.70 15 3 N -0.46 -18.12 11.30 -294.79 -3.33 -21.45 15 4 C 0.18 6.96 9.04 130.46 1.18 8.14 15 5 Cl 0.10 2.99 29.33 -2.72 -0.08 2.91 15 6 O -0.20 -8.93 10.78 -4.81 -0.05 -8.98 15 7 C 0.02 0.74 5.83 24.78 0.14 0.88 15 8 C 0.12 5.64 2.65 -12.28 -0.03 5.61 15 9 H 0.06 3.14 6.82 -2.39 -0.02 3.13 15 10 C -0.13 -6.01 8.95 71.98 0.64 -5.36 15 11 C -0.54 -29.16 8.55 25.60 0.22 -28.94 15 12 H 0.04 2.39 7.74 -2.91 -0.02 2.37 15 13 C 0.03 1.52 5.30 84.66 0.45 1.97 15 14 N -0.91 -48.47 11.32 21.45 0.24 -48.23 15 15 Si 0.96 42.11 29.54 68.60 2.03 44.14 15 16 H -0.28 -12.26 7.11 99.48 0.71 -11.55 15 17 H -0.28 -11.84 7.11 99.48 0.71 -11.13 15 18 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15 19 H 0.09 2.41 8.14 -2.38 -0.02 2.39 15 20 H 0.09 2.39 8.14 -2.39 -0.02 2.37 15 21 H 0.08 2.52 7.16 -2.39 -0.02 2.51 15 22 H 0.03 1.47 8.14 -2.39 -0.02 1.45 15 23 H 0.08 3.91 6.07 -2.39 -0.01 3.89 15 24 H 0.02 1.18 8.14 -2.39 -0.02 1.17 15 25 H 0.27 13.56 8.31 -92.71 -0.77 12.79 15 Total: -1.00 -57.28 239.75 3.62 -53.66 By element: Atomic # 1 Polarization: -2.69 SS G_CDS: 1.20 Total: -1.49 kcal Atomic # 6 Polarization: -24.18 SS G_CDS: 3.61 Total: -20.56 kcal Atomic # 7 Polarization: -66.59 SS G_CDS: -3.09 Total: -69.68 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -0.05 Total: -8.98 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Atomic # 17 Polarization: 2.99 SS G_CDS: -0.08 Total: 2.91 kcal Total: -57.28 3.62 -53.66 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259998521.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.948 kcal (2) G-P(sol) polarization free energy of solvation -57.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds