Wall clock time and date at job start Mon Mar 30 2020 02:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99967 * 2 1 4 4 H 1.48507 * 109.47042 * 264.74759 * 3 2 1 5 5 H 1.48500 * 109.46974 * 24.74256 * 3 2 1 6 6 H 1.48492 * 109.47124 * 144.74706 * 3 2 1 7 7 C 1.37877 * 120.00013 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00024 * 10.87851 * 7 2 1 9 9 C 1.50697 * 120.00084 * 190.87902 * 7 2 1 10 10 N 1.46903 * 109.50015 * 62.49935 * 9 7 2 11 11 C 1.53116 * 109.50462 * 302.42377 * 9 7 2 12 12 C 1.53123 * 109.16487 * 182.36184 * 11 9 7 13 13 C 1.53045 * 109.27238 * 57.65244 * 12 11 9 14 14 N 1.46844 * 109.52297 * 300.82132 * 13 12 11 15 15 C 1.46906 * 110.99703 * 185.84105 * 14 13 12 16 16 C 1.52998 * 109.47044 * 293.95705 * 15 14 13 17 17 O 1.42895 * 109.47383 * 64.99847 * 16 15 14 18 18 C 1.46842 * 111.19877 * 61.74900 * 14 13 12 19 19 H 0.96996 * 119.99942 * 359.97438 * 1 2 3 20 20 H 1.00898 * 111.00117 * 308.49947 * 10 9 7 21 21 H 1.00896 * 111.00128 * 72.45906 * 10 9 7 22 22 H 1.09000 * 109.52207 * 302.26893 * 11 9 7 23 23 H 1.09007 * 109.52807 * 62.45563 * 11 9 7 24 24 H 1.08992 * 109.50724 * 177.59198 * 12 11 9 25 25 H 1.09001 * 109.50197 * 297.71724 * 12 11 9 26 26 H 1.08998 * 109.46192 * 60.84294 * 13 12 11 27 27 H 1.09005 * 109.45737 * 180.80539 * 13 12 11 28 28 H 1.09004 * 109.47072 * 53.95484 * 15 14 13 29 29 H 1.08998 * 109.46937 * 173.95088 * 15 14 13 30 30 H 1.09004 * 109.47098 * 185.00421 * 16 15 14 31 31 H 1.09001 * 109.47354 * 304.99595 * 16 15 14 32 32 H 0.96702 * 113.99995 * 179.97438 * 17 16 15 33 33 H 1.09002 * 109.46367 * 178.23846 * 18 14 13 34 34 H 1.08996 * 109.46440 * 58.26925 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6077 1.9823 -1.3943 5 1 1.3955 2.6822 0.5860 6 1 3.4867 1.4748 0.8081 7 6 2.0046 -1.1941 0.0005 8 1 1.4792 -2.1210 -0.1756 9 6 3.4912 -1.2057 0.2469 10 7 3.7693 -0.6883 1.5933 11 6 4.1887 -0.3248 -0.7934 12 6 5.7026 -0.3890 -0.5726 13 6 6.1652 -1.8449 -0.6648 14 7 5.4699 -2.6460 0.3507 15 6 5.9896 -4.0196 0.3842 16 6 5.6510 -4.7251 -0.9305 17 8 6.3416 -4.0857 -2.0058 18 6 4.0180 -2.6379 0.1309 19 1 -0.4850 0.8400 0.0004 20 1 3.3139 0.2000 1.7405 21 1 3.4980 -1.3552 2.3002 22 1 3.9509 -0.6852 -1.7942 23 1 3.8483 0.7052 -0.6857 24 1 6.2072 0.2022 -1.3367 25 1 5.9436 0.0077 0.4136 26 1 5.9362 -2.2367 -1.6558 27 1 7.2405 -1.8958 -0.4939 28 1 7.0714 -3.9957 0.5156 29 1 5.5346 -4.5601 1.2143 30 1 5.9575 -5.7695 -0.8718 31 1 4.5765 -4.6711 -1.1057 32 1 6.1737 -4.4818 -2.8719 33 1 3.5338 -3.2647 0.8798 34 1 3.7991 -3.0260 -0.8638 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260079592.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:22 Heat of formation + Delta-G solvation = -23.106384 kcal Electronic energy + Delta-G solvation = -15747.925481 eV Core-core repulsion = 13295.466014 eV Total energy + Delta-G solvation = -2452.459467 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.01861 -36.65048 -34.27586 -32.13274 -31.21706 -28.25429 -27.63199 -24.93839 -23.94001 -21.39720 -20.72856 -18.30013 -17.36936 -16.63236 -15.77806 -15.18252 -14.69643 -14.22860 -13.82897 -13.65963 -13.17931 -12.79886 -12.50156 -11.99814 -11.87355 -11.58582 -11.29478 -11.08287 -10.82339 -10.55396 -10.35178 -10.07008 -9.73384 -9.59629 -9.51182 -8.62361 -8.53032 -7.47103 -7.14988 -6.17912 -4.17752 3.26807 3.38230 3.40271 4.30467 4.33191 4.66846 5.16475 5.28500 5.39633 5.44497 5.72794 5.75691 5.86703 6.03189 6.07428 6.19420 6.31533 6.33182 6.53883 6.58314 6.70794 6.81070 6.99893 7.12613 7.37320 7.56401 7.66987 7.84282 7.88472 8.27729 8.72308 8.74432 8.91700 9.46557 10.95301 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.044012 B = 0.010823 C = 0.010074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.031994 B = 2586.455928 C = 2778.676696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.073 3.927 3 Si 0.883 3.117 4 H -0.285 1.285 5 H -0.305 1.305 6 H -0.239 1.239 7 C -0.548 4.548 8 H 0.070 0.930 9 C 0.216 3.784 10 N -0.835 5.835 11 C -0.110 4.110 12 C -0.113 4.113 13 C 0.064 3.936 14 N -0.520 5.520 15 C 0.055 3.945 16 C 0.033 3.967 17 O -0.562 6.562 18 C 0.083 3.917 19 H 0.264 0.736 20 H 0.323 0.677 21 H 0.322 0.678 22 H 0.052 0.948 23 H 0.043 0.957 24 H 0.042 0.958 25 H 0.074 0.926 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.039 0.961 31 H 0.051 0.949 32 H 0.367 0.633 33 H 0.060 0.940 34 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.795 -6.031 -1.544 12.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.130 4.130 3 Si 0.716 3.284 4 H -0.212 1.212 5 H -0.234 1.234 6 H -0.165 1.165 7 C -0.587 4.587 8 H 0.088 0.912 9 C 0.124 3.876 10 N -0.366 5.366 11 C -0.148 4.148 12 C -0.151 4.151 13 C -0.064 4.064 14 N -0.242 5.242 15 C -0.074 4.074 16 C -0.047 4.047 17 O -0.367 6.367 18 C -0.045 4.045 19 H 0.074 0.926 20 H 0.138 0.862 21 H 0.133 0.867 22 H 0.070 0.930 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.214 0.786 33 H 0.079 0.921 34 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 11.705 -5.320 -0.822 12.884 hybrid contribution -1.248 0.008 -1.301 1.803 sum 10.457 -5.312 -2.123 11.920 Atomic orbital electron populations 1.69945 1.06432 1.27150 1.49464 1.25026 0.94696 0.99259 0.94060 0.87200 0.79635 0.82920 0.78694 1.21222 1.23364 1.16498 1.21646 0.91546 0.95011 1.50543 0.91185 1.18610 0.92280 0.89684 0.87035 1.59615 1.65804 1.07006 1.04216 1.21971 0.94203 0.99221 0.99387 1.21561 0.96509 0.95592 1.01443 1.22135 0.96728 0.93327 0.94198 1.62052 1.04900 1.08709 1.48584 1.22311 1.00935 0.90286 0.93871 1.23108 0.96446 0.95711 0.89407 1.86667 1.72514 1.59299 1.18206 1.22035 0.85716 0.98391 0.98337 0.92588 0.86169 0.86737 0.92969 0.93872 0.93918 0.90743 0.92638 0.92753 0.90881 0.89866 0.94229 0.93056 0.78595 0.92120 0.95356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.98 13.96 55.43 0.77 -26.21 16 2 C 0.07 2.06 5.39 -17.82 -0.10 1.97 16 3 Si 0.88 21.75 22.89 -169.99 -3.89 17.85 16 4 H -0.28 -7.06 7.07 56.52 0.40 -6.66 16 5 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 6 H -0.24 -5.55 4.83 56.52 0.27 -5.28 16 7 C -0.55 -15.06 8.84 -34.44 -0.30 -15.36 16 8 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 9 C 0.22 5.01 0.56 -132.67 -0.07 4.93 16 10 N -0.83 -18.65 7.99 -0.13 0.00 -18.65 16 11 C -0.11 -2.49 4.11 -26.61 -0.11 -2.59 16 12 C -0.11 -2.22 5.93 -26.64 -0.16 -2.38 16 13 C 0.06 1.15 4.61 -3.83 -0.02 1.14 16 14 N -0.52 -9.45 4.71 -234.67 -1.11 -10.56 16 15 C 0.06 0.81 5.93 -3.82 -0.02 0.79 16 16 C 0.03 0.43 6.83 37.16 0.25 0.69 16 17 O -0.56 -7.55 10.33 -35.23 -0.36 -7.91 16 18 C 0.08 1.70 3.57 -3.84 -0.01 1.69 16 19 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 20 H 0.32 7.49 4.81 -39.29 -0.19 7.31 16 21 H 0.32 6.89 8.88 -39.29 -0.35 6.54 16 22 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 23 H 0.04 1.02 2.39 -51.93 -0.12 0.90 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 1.54 7.73 -51.93 -0.40 1.13 16 26 H 0.06 1.03 5.54 -51.93 -0.29 0.74 16 27 H 0.05 0.93 8.06 -51.93 -0.42 0.51 16 28 H 0.07 1.03 8.06 -51.93 -0.42 0.61 16 29 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.74 6.23 -51.93 -0.32 0.41 16 32 H 0.37 3.39 9.12 45.56 0.42 3.80 16 33 H 0.06 1.24 8.12 -51.93 -0.42 0.81 16 34 H 0.03 0.59 6.49 -51.93 -0.34 0.26 16 LS Contribution 248.94 15.07 3.75 3.75 Total: -1.00 -30.68 248.94 -5.61 -36.29 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -4.23 Total: 14.58 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -0.54 Total: -9.14 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: -0.33 Total: -55.42 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -0.36 Total: -7.91 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -3.89 Total: 17.85 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -30.68 -5.61 -36.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260079592.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.179 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds