Wall clock time and date at job start Mon Mar 30 2020 02:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 113.99973 * 2 1 4 4 C 1.53001 * 109.47208 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47172 * 303.65381 * 4 3 2 6 6 C 1.50698 * 109.46828 * 63.65732 * 4 3 2 7 7 H 1.08002 * 120.00295 * 65.16303 * 6 4 3 8 8 C 1.37884 * 120.00033 * 245.15915 * 6 4 3 9 9 N 1.31517 * 119.99623 * 5.50368 * 8 6 4 10 10 Si 1.86795 * 120.00172 * 185.49663 * 8 6 4 11 11 H 1.48502 * 109.47111 * 90.00408 * 10 8 6 12 12 H 1.48508 * 109.47035 * 210.00067 * 10 8 6 13 13 H 1.48502 * 109.47111 * 330.00148 * 10 8 6 14 14 C 1.52998 * 109.47290 * 183.65308 * 4 3 2 15 15 H 1.09007 * 109.52336 * 300.13005 * 14 4 3 16 16 C 1.53174 * 109.52385 * 180.02562 * 14 4 3 17 17 C 1.53178 * 109.03827 * 183.11456 * 16 14 4 18 18 C 1.53097 * 109.16252 * 56.97793 * 17 16 14 19 19 O 1.42896 * 109.41543 * 302.39637 * 18 17 16 20 20 C 1.42894 * 114.10134 * 61.15617 * 19 18 17 21 21 H 1.08994 * 109.47092 * 299.99971 * 1 2 3 22 22 H 1.09009 * 109.46746 * 60.00038 * 1 2 3 23 23 H 1.09004 * 109.46882 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47399 * 299.99981 * 3 2 1 25 25 H 1.09000 * 109.47145 * 59.99961 * 3 2 1 26 26 H 0.96997 * 119.99790 * 180.02562 * 9 8 6 27 27 H 1.08994 * 109.54446 * 302.98148 * 16 14 4 28 28 H 1.08998 * 109.54200 * 63.25141 * 16 14 4 29 29 H 1.08998 * 109.52876 * 176.88950 * 17 16 14 30 30 H 1.09003 * 109.52126 * 297.07983 * 17 16 14 31 31 H 1.09008 * 109.47694 * 62.37608 * 18 17 16 32 32 H 1.08998 * 109.47891 * 182.39327 * 18 17 16 33 33 H 1.08999 * 109.48234 * 178.85439 * 20 19 18 34 34 H 1.09006 * 109.48245 * 58.82473 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8523 0.5884 0.8563 6 6 3.9869 0.5163 -1.2723 7 1 3.8351 1.0062 -2.2228 8 6 4.5938 -0.7208 -1.2237 9 7 4.6816 -1.3657 -0.0808 10 14 5.2911 -1.4810 -2.7810 11 1 6.7085 -1.0679 -2.9417 12 1 5.2146 -2.9611 -2.6865 13 1 4.5047 -1.0184 -3.9527 14 6 4.1575 2.5795 0.0926 15 1 3.8393 3.1773 -0.7616 16 6 5.6846 2.4599 0.0926 17 6 6.2949 3.8545 0.2633 18 6 5.7611 4.4822 1.5536 19 8 4.3341 4.5352 1.5011 20 6 3.7063 3.2564 1.3895 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6886 1.8464 -0.8900 25 1 1.6886 1.8464 0.8900 26 1 5.1089 -2.2358 -0.0465 27 1 6.0002 1.8205 0.9169 28 1 6.0167 2.0298 -0.8522 29 1 7.3803 3.7727 0.3199 30 1 6.0195 4.4791 -0.5865 31 1 6.0713 3.8787 2.4068 32 1 6.1591 5.4915 1.6585 33 1 2.6238 3.3828 1.3761 34 1 3.9896 2.6369 2.2405 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260178134.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:59 Heat of formation + Delta-G solvation = -110.462030 kcal Electronic energy + Delta-G solvation = -15255.775297 eV Core-core repulsion = 12767.235054 eV Total energy + Delta-G solvation = -2488.540243 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.87785 -36.84112 -34.41212 -32.25245 -31.39278 -28.17554 -25.91205 -24.98571 -23.56799 -22.91259 -20.12810 -19.04982 -16.60894 -15.89181 -15.32612 -15.04346 -14.59908 -14.47434 -14.10807 -13.96913 -13.38965 -12.70875 -12.25365 -11.99741 -11.83497 -11.59267 -10.96428 -10.77223 -10.70719 -10.58258 -10.32297 -10.29510 -9.83613 -9.58582 -9.25328 -8.95836 -8.64632 -8.46003 -8.34029 -5.91513 -3.92196 3.34454 3.41958 3.44951 4.37271 4.50615 4.86089 5.37016 5.40816 5.50002 5.57675 5.77216 5.84133 5.90513 5.94633 6.02847 6.09267 6.18807 6.25199 6.36296 6.38473 6.43679 6.58304 6.69077 7.05134 7.09566 7.18480 7.33766 7.69723 7.84494 7.98238 8.31374 8.49488 9.15647 9.69200 11.18065 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.022519 B = 0.012525 C = 0.008697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.070489 B = 2235.034429 C = 3218.627274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.356 6.356 3 C 0.074 3.926 4 C 0.035 3.965 5 H 0.076 0.924 6 C -0.501 4.501 7 H 0.049 0.951 8 C 0.075 3.925 9 N -0.883 5.883 10 Si 0.884 3.116 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.275 1.275 14 C -0.103 4.103 15 H 0.059 0.941 16 C -0.097 4.097 17 C -0.158 4.158 18 C 0.063 3.937 19 O -0.394 6.394 20 C 0.058 3.942 21 H 0.025 0.975 22 H 0.027 0.973 23 H 0.072 0.928 24 H 0.025 0.975 25 H 0.013 0.987 26 H 0.258 0.742 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.044 0.956 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.969 7.230 2.244 7.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.274 6.274 3 C -0.003 4.003 4 C 0.016 3.984 5 H 0.094 0.906 6 C -0.539 4.539 7 H 0.068 0.932 8 C -0.128 4.128 9 N -0.521 5.521 10 Si 0.712 3.288 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.200 1.200 14 C -0.122 4.122 15 H 0.077 0.923 16 C -0.135 4.135 17 C -0.196 4.196 18 C -0.014 4.014 19 O -0.314 6.314 20 C -0.018 4.018 21 H 0.043 0.957 22 H 0.046 0.954 23 H 0.091 0.909 24 H 0.043 0.957 25 H 0.031 0.969 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.888 7.048 2.335 7.478 hybrid contribution 0.250 -0.549 -0.933 1.112 sum -0.638 6.499 1.401 6.679 Atomic orbital electron populations 1.22610 0.84586 1.01235 0.98337 1.88179 1.16085 1.28348 1.94779 1.22875 0.98262 0.83188 0.95958 1.18930 0.87641 0.91036 1.00771 0.90559 1.20779 1.38473 1.02622 0.92008 0.93240 1.24868 0.95661 0.96781 0.95489 1.69917 1.43484 1.13973 1.24730 0.86744 0.79342 0.78484 0.84251 1.20823 1.21390 1.20039 1.21792 0.96027 0.98730 0.95681 0.92275 1.21394 0.95014 0.93745 1.03317 1.22274 0.99982 0.98993 0.98340 1.22483 0.81756 1.00311 0.96824 1.87822 1.18803 1.30150 1.94577 1.22925 0.96978 0.83813 0.98081 0.95664 0.95406 0.90908 0.95658 0.96881 0.93173 0.92444 0.90420 0.91937 0.91808 0.93768 0.90090 0.89697 0.93580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 101.05 1.11 1.65 16 2 O -0.36 -8.52 10.42 -35.23 -0.37 -8.89 16 3 C 0.07 1.65 5.08 37.16 0.19 1.84 16 4 C 0.04 0.85 1.93 -91.77 -0.18 0.67 16 5 H 0.08 2.09 6.96 -51.93 -0.36 1.73 16 6 C -0.50 -13.51 6.85 -34.44 -0.24 -13.74 16 7 H 0.05 1.35 7.82 -52.49 -0.41 0.94 16 8 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 9 N -0.88 -25.63 12.64 55.43 0.70 -24.93 16 10 Si 0.88 21.50 29.54 -169.99 -5.02 16.48 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 C -0.10 -2.14 1.96 -90.48 -0.18 -2.32 16 15 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 16 C -0.10 -1.94 5.00 -26.55 -0.13 -2.08 16 17 C -0.16 -2.55 6.14 -26.59 -0.16 -2.72 16 18 C 0.06 0.97 6.84 37.21 0.25 1.23 16 19 O -0.39 -7.09 10.76 -35.23 -0.38 -7.47 16 20 C 0.06 1.08 5.71 37.21 0.21 1.29 16 21 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 22 H 0.03 0.46 8.14 -51.92 -0.42 0.03 16 23 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 24 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.01 0.26 6.31 -51.93 -0.33 -0.06 16 26 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.08 1.69 7.35 -51.93 -0.38 1.31 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.04 0.66 8.14 -51.92 -0.42 0.23 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.08 1.49 6.50 -51.93 -0.34 1.15 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 273.46 15.07 4.12 4.12 Total: -1.00 -29.58 273.46 -5.77 -35.35 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -5.60 Total: -2.46 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: 0.79 Total: -12.20 kcal Atomic # 7 Polarization: -25.63 SS G_CDS: 0.70 Total: -24.93 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -0.75 Total: -16.36 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.58 -5.77 -35.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260178134.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.114 kcal (2) G-P(sol) polarization free energy of solvation -29.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds