Wall clock time and date at job start Mon Mar 30 2020 02:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 113.99973 * 2 1 4 4 C 1.53001 * 109.47208 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47172 * 303.65381 * 4 3 2 6 6 C 1.50698 * 109.46828 * 63.65732 * 4 3 2 7 7 H 1.08002 * 120.00295 * 65.16303 * 6 4 3 8 8 C 1.37884 * 120.00033 * 245.15915 * 6 4 3 9 9 N 1.31517 * 119.99623 * 5.50368 * 8 6 4 10 10 Si 1.86795 * 120.00172 * 185.49663 * 8 6 4 11 11 H 1.48502 * 109.47111 * 90.00408 * 10 8 6 12 12 H 1.48508 * 109.47035 * 210.00067 * 10 8 6 13 13 H 1.48502 * 109.47111 * 330.00148 * 10 8 6 14 14 C 1.52998 * 109.47290 * 183.65308 * 4 3 2 15 15 H 1.09007 * 109.52336 * 300.13005 * 14 4 3 16 16 C 1.53174 * 109.52385 * 180.02562 * 14 4 3 17 17 C 1.53178 * 109.03827 * 183.11456 * 16 14 4 18 18 C 1.53097 * 109.16252 * 56.97793 * 17 16 14 19 19 O 1.42896 * 109.41543 * 302.39637 * 18 17 16 20 20 C 1.42894 * 114.10134 * 61.15617 * 19 18 17 21 21 H 1.08994 * 109.47092 * 299.99971 * 1 2 3 22 22 H 1.09009 * 109.46746 * 60.00038 * 1 2 3 23 23 H 1.09004 * 109.46882 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47399 * 299.99981 * 3 2 1 25 25 H 1.09000 * 109.47145 * 59.99961 * 3 2 1 26 26 H 0.96997 * 119.99790 * 180.02562 * 9 8 6 27 27 H 1.08994 * 109.54446 * 302.98148 * 16 14 4 28 28 H 1.08998 * 109.54200 * 63.25141 * 16 14 4 29 29 H 1.08998 * 109.52876 * 176.88950 * 17 16 14 30 30 H 1.09003 * 109.52126 * 297.07983 * 17 16 14 31 31 H 1.09008 * 109.47694 * 62.37608 * 18 17 16 32 32 H 1.08998 * 109.47891 * 182.39327 * 18 17 16 33 33 H 1.08999 * 109.48234 * 178.85439 * 20 19 18 34 34 H 1.09006 * 109.48245 * 58.82473 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8523 0.5884 0.8563 6 6 3.9869 0.5163 -1.2723 7 1 3.8351 1.0062 -2.2228 8 6 4.5938 -0.7208 -1.2237 9 7 4.6816 -1.3657 -0.0808 10 14 5.2911 -1.4810 -2.7810 11 1 6.7085 -1.0679 -2.9417 12 1 5.2146 -2.9611 -2.6865 13 1 4.5047 -1.0184 -3.9527 14 6 4.1575 2.5795 0.0926 15 1 3.8393 3.1773 -0.7616 16 6 5.6846 2.4599 0.0926 17 6 6.2949 3.8545 0.2633 18 6 5.7611 4.4822 1.5536 19 8 4.3341 4.5352 1.5011 20 6 3.7063 3.2564 1.3895 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6886 1.8464 -0.8900 25 1 1.6886 1.8464 0.8900 26 1 5.1089 -2.2358 -0.0465 27 1 6.0002 1.8205 0.9169 28 1 6.0167 2.0298 -0.8522 29 1 7.3803 3.7727 0.3199 30 1 6.0195 4.4791 -0.5865 31 1 6.0713 3.8787 2.4068 32 1 6.1591 5.4915 1.6585 33 1 2.6238 3.3828 1.3761 34 1 3.9896 2.6369 2.2405 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260178134.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:58 Heat of formation + Delta-G solvation = -129.733071 kcal Electronic energy + Delta-G solvation = -15256.610952 eV Core-core repulsion = 12767.235054 eV Total energy + Delta-G solvation = -2489.375898 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.37176 -38.52090 -36.14468 -34.02747 -33.04968 -29.80480 -27.63832 -26.59788 -25.23198 -24.45991 -21.76648 -20.71689 -18.60620 -17.45629 -16.81179 -16.57634 -16.43091 -16.20514 -15.66733 -15.51121 -14.91420 -14.30516 -13.94434 -13.74125 -13.36054 -13.15220 -12.81292 -12.52996 -12.50826 -12.09540 -12.09182 -11.88527 -11.41089 -11.17978 -11.05575 -10.81495 -10.44239 -10.27135 -10.11453 -8.02603 -6.07593 1.40073 1.41868 1.50416 2.47347 3.01938 3.28353 3.29252 4.06538 4.10039 4.17899 4.23540 4.44376 4.47273 4.52889 4.60858 4.67973 4.70541 4.77904 4.85855 4.88311 4.97235 5.02950 5.16037 5.30767 5.43731 5.49781 5.66868 5.73084 5.92393 6.31488 6.42047 6.69345 7.08973 7.55571 9.06715 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.022519 B = 0.012525 C = 0.008697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.070489 B = 2235.034429 C = 3218.627274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.401 6.401 3 C 0.077 3.923 4 C 0.033 3.967 5 H 0.039 0.961 6 C -0.504 4.504 7 H 0.041 0.959 8 C 0.026 3.974 9 N -0.917 5.917 10 Si 0.938 3.062 11 H -0.274 1.274 12 H -0.289 1.289 13 H -0.272 1.272 14 C -0.098 4.098 15 H 0.056 0.944 16 C -0.096 4.096 17 C -0.150 4.150 18 C 0.058 3.942 19 O -0.400 6.400 20 C 0.068 3.932 21 H 0.047 0.953 22 H 0.041 0.959 23 H 0.085 0.915 24 H 0.029 0.971 25 H 0.038 0.962 26 H 0.256 0.744 27 H 0.038 0.962 28 H 0.051 0.949 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.116 0.884 33 H 0.097 0.903 34 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.080 8.690 2.152 9.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.320 6.320 3 C 0.001 3.999 4 C 0.014 3.986 5 H 0.058 0.942 6 C -0.542 4.542 7 H 0.060 0.940 8 C -0.173 4.173 9 N -0.556 5.556 10 Si 0.765 3.235 11 H -0.199 1.199 12 H -0.215 1.215 13 H -0.197 1.197 14 C -0.117 4.117 15 H 0.074 0.926 16 C -0.134 4.134 17 C -0.187 4.187 18 C -0.018 4.018 19 O -0.319 6.319 20 C -0.009 4.009 21 H 0.066 0.934 22 H 0.059 0.941 23 H 0.103 0.897 24 H 0.047 0.953 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.134 0.866 33 H 0.115 0.885 34 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.004 8.527 2.234 8.871 hybrid contribution 0.248 -0.981 -0.900 1.354 sum -0.757 7.546 1.334 7.700 Atomic orbital electron populations 1.22844 0.81661 1.02728 1.00043 1.88107 1.19500 1.29278 1.95139 1.22772 0.96719 0.83199 0.97228 1.18887 0.89493 0.92246 0.97960 0.94238 1.21045 1.37803 1.02663 0.92735 0.94038 1.25516 0.96357 0.97439 0.97972 1.70050 1.44858 1.14249 1.26486 0.85874 0.79043 0.77474 0.81133 1.19927 1.21496 1.19695 1.21659 0.96286 0.96754 0.97009 0.92554 1.21320 0.94938 0.96017 1.01122 1.22217 1.01156 0.96193 0.99169 1.22735 0.80395 1.02404 0.96312 1.87820 1.20327 1.29294 1.94456 1.22747 0.97751 0.84037 0.96340 0.93401 0.94074 0.89678 0.95302 0.94368 0.93463 0.94330 0.92992 0.89699 0.91346 0.93276 0.86632 0.88532 0.94000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.82 11.01 113.37 1.25 2.06 16 2 O -0.40 -19.11 10.42 -148.98 -1.55 -20.66 16 3 C 0.08 3.41 5.08 71.98 0.37 3.78 16 4 C 0.03 1.63 1.93 -11.54 -0.02 1.61 16 5 H 0.04 2.23 6.96 -2.39 -0.02 2.22 16 6 C -0.50 -27.65 6.85 25.60 0.18 -27.47 16 7 H 0.04 2.29 7.82 -2.91 -0.02 2.26 16 8 C 0.03 1.47 5.45 84.66 0.46 1.93 16 9 N -0.92 -54.64 12.64 21.45 0.27 -54.36 16 10 Si 0.94 44.66 29.54 68.60 2.03 46.68 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 13 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 14 C -0.10 -4.03 1.96 -10.70 -0.02 -4.05 16 15 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 16 C -0.10 -3.85 5.00 30.71 0.15 -3.70 16 17 C -0.15 -4.52 6.14 30.69 0.19 -4.33 16 18 C 0.06 1.61 6.84 72.01 0.49 2.10 16 19 O -0.40 -13.35 10.76 -148.98 -1.60 -14.95 16 20 C 0.07 2.41 5.71 72.01 0.41 2.83 16 21 H 0.05 1.40 8.14 -2.39 -0.02 1.39 16 22 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 23 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 24 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.04 1.47 6.31 -2.39 -0.02 1.46 16 26 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 27 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.05 2.30 7.35 -2.39 -0.02 2.28 16 29 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.10 3.19 6.50 -2.39 -0.02 3.17 16 34 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 Total: -1.00 -63.86 273.46 3.64 -60.21 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 1.05 Total: 8.33 kcal Atomic # 6 Polarization: -28.70 SS G_CDS: 3.45 Total: -25.25 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: 0.27 Total: -54.36 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -3.16 Total: -35.61 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -63.86 3.64 -60.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260178134.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.520 kcal (2) G-P(sol) polarization free energy of solvation -63.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds