Wall clock time and date at job start Mon Mar 30 2020 02:30:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42911 * 1
3 3 C 1.42900 * 113.99938 * 2 1
4 4 C 1.52995 * 109.46933 * 180.02562 * 3 2 1
5 5 H 1.08991 * 109.47659 * 55.00120 * 4 3 2
6 6 C 1.50704 * 109.46913 * 294.99655 * 4 3 2
7 7 H 1.08003 * 119.99873 * 122.35831 * 6 4 3
8 8 C 1.37872 * 120.00173 * 302.08446 * 6 4 3
9 9 N 1.31522 * 120.00124 * 353.65688 * 8 6 4
10 10 Si 1.86799 * 119.99941 * 173.65968 * 8 6 4
11 11 H 1.48501 * 109.47253 * 94.99508 * 10 8 6
12 12 H 1.48503 * 109.46995 * 214.99125 * 10 8 6
13 13 H 1.48498 * 109.47453 * 334.99351 * 10 8 6
14 14 C 1.53003 * 109.47261 * 175.00357 * 4 3 2
15 15 H 1.08998 * 109.52138 * 54.84642 * 14 4 3
16 16 C 1.53188 * 109.51944 * 294.72831 * 14 4 3
17 17 C 1.53171 * 109.03461 * 183.11311 * 16 14 4
18 18 C 1.53088 * 109.16387 * 56.98030 * 17 16 14
19 19 O 1.42902 * 109.41388 * 302.38665 * 18 17 16
20 20 C 1.42905 * 114.15395 * 61.13062 * 19 18 17
21 21 H 1.08994 * 109.46923 * 300.00014 * 1 2 3
22 22 H 1.09006 * 109.46969 * 60.00102 * 1 2 3
23 23 H 1.08995 * 109.46675 * 179.97438 * 1 2 3
24 24 H 1.09000 * 109.47371 * 59.99778 * 3 2 1
25 25 H 1.09003 * 109.47352 * 300.00451 * 3 2 1
26 26 H 0.96993 * 119.99766 * 179.97438 * 9 8 6
27 27 H 1.08999 * 109.54322 * 302.97874 * 16 14 4
28 28 H 1.09000 * 109.54326 * 63.24145 * 16 14 4
29 29 H 1.09003 * 109.52123 * 176.88830 * 17 16 14
30 30 H 1.09002 * 109.52554 * 297.06851 * 17 16 14
31 31 H 1.08994 * 109.48357 * 62.37454 * 18 17 16
32 32 H 1.09001 * 109.48136 * 182.39608 * 18 17 16
33 33 H 1.08997 * 109.54212 * 178.92101 * 20 19 18
34 34 H 1.09006 * 109.42889 * 58.88195 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0103 1.3055 0.0000
4 6 3.5355 1.1846 -0.0006
5 1 3.8509 0.5686 -0.8426
6 6 3.9893 0.5462 1.2868
7 1 4.5713 -0.3633 1.2628
8 6 3.6665 1.1262 2.4952
9 7 3.0719 2.2990 2.5238
10 14 4.0735 0.2463 4.0919
11 1 5.3771 0.7355 4.6083
12 1 3.0108 0.5197 5.0926
13 1 4.1562 -1.2155 3.8445
14 6 4.1574 2.5769 -0.1263
15 1 3.7711 3.2210 0.6637
16 6 3.8041 3.1740 -1.4921
17 6 4.4956 4.5330 -1.6372
18 6 6.0047 4.3509 -1.4555
19 8 6.2619 3.7635 -0.1784
20 6 5.6795 2.4706 -0.0014
21 1 -0.3633 0.5138 0.8899
22 1 -0.3633 0.5139 -0.8901
23 1 -0.3632 -1.0276 -0.0005
24 1 1.6887 1.8464 0.8899
25 1 1.6886 1.8465 -0.8900
26 1 2.8445 2.7069 3.3739
27 1 4.1456 2.5049 -2.2819
28 1 2.7243 3.3046 -1.5646
29 1 4.2944 4.9400 -2.6281
30 1 4.1172 5.2172 -0.8777
31 1 6.3892 3.6988 -2.2397
32 1 6.4978 5.3211 -1.5155
33 1 5.9373 2.0866 0.9856
34 1 6.0605 1.7935 -0.7660
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260178139.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:30:07
Heat of formation + Delta-G solvation = -125.409218 kcal
Electronic energy + Delta-G solvation = -15464.049721 eV
Core-core repulsion = 12974.861320 eV
Total energy + Delta-G solvation = -2489.188402 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 214.136 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-40.30161 -38.53600 -36.22739 -34.13910 -32.48336 -29.82143 -27.65270 -26.56135
-25.44320 -24.02791 -22.02195 -20.68604 -18.13559 -17.36383 -16.92736 -16.64232
-16.48441 -16.09713 -15.67444 -15.27105 -14.85563 -14.63009 -13.82179 -13.42444
-13.38445 -13.11816 -12.73153 -12.52784 -12.32572 -12.20832 -11.98109 -11.86319
-11.53809 -11.24158 -10.91822 -10.77007 -10.44075 -10.22014 -9.94159 -7.99492
-6.10381 1.40670 1.43949 1.52938 2.47654 3.12482 3.23994 3.36164
4.08842 4.16341 4.18401 4.39321 4.51948 4.53287 4.61724 4.67738
4.72667 4.81640 4.86131 4.92715 4.97472 5.07938 5.18168 5.22373
5.33509 5.48548 5.59578 5.67204 5.81512 6.15579 6.42326 6.50928
6.70994 6.87278 7.55127 8.98919
Molecular weight = 214.14amu
Principal moments of inertia in cm(-1)
A = 0.023695 B = 0.013320 C = 0.009398
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1181.390651 B = 2101.604693 C = 2978.537252
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 O -0.412 6.412
3 C 0.077 3.923
4 C 0.050 3.950
5 H 0.016 0.984
6 C -0.514 4.514
7 H 0.040 0.960
8 C 0.032 3.968
9 N -0.901 5.901
10 Si 0.935 3.065
11 H -0.278 1.278
12 H -0.285 1.285
13 H -0.276 1.276
14 C -0.102 4.102
15 H 0.080 0.920
16 C -0.120 4.120
17 C -0.147 4.147
18 C 0.055 3.945
19 O -0.413 6.413
20 C 0.093 3.907
21 H 0.027 0.973
22 H 0.046 0.954
23 H 0.095 0.905
24 H 0.053 0.947
25 H 0.023 0.977
26 H 0.258 0.742
27 H 0.058 0.942
28 H 0.057 0.943
29 H 0.094 0.906
30 H 0.056 0.944
31 H 0.055 0.945
32 H 0.108 0.892
33 H 0.074 0.926
34 H 0.038 0.962
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.464 2.953 -7.291 7.880
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.331 6.331
3 C 0.001 3.999
4 C 0.031 3.969
5 H 0.034 0.966
6 C -0.552 4.552
7 H 0.059 0.941
8 C -0.167 4.167
9 N -0.541 5.541
10 Si 0.763 3.237
11 H -0.204 1.204
12 H -0.211 1.211
13 H -0.201 1.201
14 C -0.122 4.122
15 H 0.098 0.902
16 C -0.157 4.157
17 C -0.184 4.184
18 C -0.022 4.022
19 O -0.332 6.332
20 C 0.017 3.983
21 H 0.046 0.954
22 H 0.064 0.936
23 H 0.113 0.887
24 H 0.071 0.929
25 H 0.041 0.959
26 H 0.068 0.932
27 H 0.077 0.923
28 H 0.075 0.925
29 H 0.112 0.888
30 H 0.074 0.926
31 H 0.073 0.927
32 H 0.126 0.874
33 H 0.092 0.908
34 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges -0.313 3.005 -7.015 7.638
hybrid contribution -0.382 -0.463 0.967 1.138
sum -0.694 2.542 -6.047 6.596
Atomic orbital electron populations
1.22777 0.81553 1.02863 0.99527 1.87843 1.19744 1.30221 1.95323
1.22609 0.96388 0.82693 0.98224 1.18664 0.90429 0.92974 0.94802
0.96585 1.21159 1.33478 1.08773 0.91808 0.94150 1.25373 0.95208
0.95138 1.00996 1.69878 1.42682 1.15678 1.25845 0.85890 0.77773
0.79223 0.80854 1.20403 1.21056 1.20118 1.21558 0.95135 0.98545
0.96927 0.90224 1.21757 1.00064 0.96705 0.97182 1.22138 0.96320
0.97248 1.02743 1.22742 0.95435 0.98915 0.85075 1.87841 1.75137
1.34056 1.36189 1.22310 0.93001 0.82543 1.00470 0.95430 0.93568
0.88662 0.92858 0.95887 0.93225 0.92303 0.92452 0.88760 0.92564
0.92662 0.87434 0.90823 0.94409
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 1.04 11.01 113.37 1.25 2.29 16
2 O -0.41 -19.33 10.46 -148.98 -1.56 -20.88 16
3 C 0.08 3.68 5.02 71.98 0.36 4.04 16
4 C 0.05 2.49 1.92 -11.54 -0.02 2.46 16
5 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16
6 C -0.51 -28.09 7.02 25.60 0.18 -27.91 16
7 H 0.04 2.25 7.82 -2.91 -0.02 2.23 16
8 C 0.03 1.74 5.10 84.65 0.43 2.17 16
9 N -0.90 -49.60 9.44 21.45 0.20 -49.40 16
10 Si 0.94 44.05 29.54 68.60 2.03 46.08 16
11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16
12 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16
13 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16
14 C -0.10 -4.62 1.69 -10.70 -0.02 -4.63 16
15 H 0.08 4.15 6.17 -2.39 -0.01 4.14 16
16 C -0.12 -4.33 5.00 30.71 0.15 -4.17 16
17 C -0.15 -4.44 6.14 30.68 0.19 -4.25 16
18 C 0.05 1.66 6.84 72.01 0.49 2.15 16
19 O -0.41 -16.78 10.76 -148.98 -1.60 -18.38 16
20 C 0.09 4.08 5.76 72.01 0.41 4.50 16
21 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16
22 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16
23 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16
24 H 0.05 2.83 6.04 -2.39 -0.01 2.81 16
25 H 0.02 1.00 6.43 -2.39 -0.02 0.98 16
26 H 0.26 13.78 8.31 -92.71 -0.77 13.01 16
27 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16
28 H 0.06 2.05 6.64 -2.39 -0.02 2.04 16
29 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16
30 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16
31 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16
32 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16
33 H 0.07 3.64 7.18 -2.39 -0.02 3.62 16
34 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16
Total: -1.00 -60.05 267.02 3.55 -56.50
By element:
Atomic # 1 Polarization: 8.39 SS G_CDS: 1.06 Total: 9.44 kcal
Atomic # 6 Polarization: -26.79 SS G_CDS: 3.43 Total: -23.36 kcal
Atomic # 7 Polarization: -49.60 SS G_CDS: 0.20 Total: -49.40 kcal
Atomic # 8 Polarization: -36.10 SS G_CDS: -3.16 Total: -39.26 kcal
Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal
Total: -60.05 3.55 -56.50 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260178139.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -68.909 kcal
(2) G-P(sol) polarization free energy of solvation -60.054 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.963 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.554 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.501 kcal
(6) G-S(sol) free energy of system = (1) + (5) -125.409 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds