Wall clock time and date at job start Mon Mar 30 2020 02:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42911 * 1 3 3 C 1.42900 * 113.99938 * 2 1 4 4 C 1.52995 * 109.46933 * 180.02562 * 3 2 1 5 5 H 1.08991 * 109.47659 * 55.00120 * 4 3 2 6 6 C 1.50704 * 109.46913 * 294.99655 * 4 3 2 7 7 H 1.08003 * 119.99873 * 122.35831 * 6 4 3 8 8 C 1.37872 * 120.00173 * 302.08446 * 6 4 3 9 9 N 1.31522 * 120.00124 * 353.65688 * 8 6 4 10 10 Si 1.86799 * 119.99941 * 173.65968 * 8 6 4 11 11 H 1.48501 * 109.47253 * 94.99508 * 10 8 6 12 12 H 1.48503 * 109.46995 * 214.99125 * 10 8 6 13 13 H 1.48498 * 109.47453 * 334.99351 * 10 8 6 14 14 C 1.53003 * 109.47261 * 175.00357 * 4 3 2 15 15 H 1.08998 * 109.52138 * 54.84642 * 14 4 3 16 16 C 1.53188 * 109.51944 * 294.72831 * 14 4 3 17 17 C 1.53171 * 109.03461 * 183.11311 * 16 14 4 18 18 C 1.53088 * 109.16387 * 56.98030 * 17 16 14 19 19 O 1.42902 * 109.41388 * 302.38665 * 18 17 16 20 20 C 1.42905 * 114.15395 * 61.13062 * 19 18 17 21 21 H 1.08994 * 109.46923 * 300.00014 * 1 2 3 22 22 H 1.09006 * 109.46969 * 60.00102 * 1 2 3 23 23 H 1.08995 * 109.46675 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47371 * 59.99778 * 3 2 1 25 25 H 1.09003 * 109.47352 * 300.00451 * 3 2 1 26 26 H 0.96993 * 119.99766 * 179.97438 * 9 8 6 27 27 H 1.08999 * 109.54322 * 302.97874 * 16 14 4 28 28 H 1.09000 * 109.54326 * 63.24145 * 16 14 4 29 29 H 1.09003 * 109.52123 * 176.88830 * 17 16 14 30 30 H 1.09002 * 109.52554 * 297.06851 * 17 16 14 31 31 H 1.08994 * 109.48357 * 62.37454 * 18 17 16 32 32 H 1.09001 * 109.48136 * 182.39608 * 18 17 16 33 33 H 1.08997 * 109.54212 * 178.92101 * 20 19 18 34 34 H 1.09006 * 109.42889 * 58.88195 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8509 0.5686 -0.8426 6 6 3.9893 0.5462 1.2868 7 1 4.5713 -0.3633 1.2628 8 6 3.6665 1.1262 2.4952 9 7 3.0719 2.2990 2.5238 10 14 4.0735 0.2463 4.0919 11 1 5.3771 0.7355 4.6083 12 1 3.0108 0.5197 5.0926 13 1 4.1562 -1.2155 3.8445 14 6 4.1574 2.5769 -0.1263 15 1 3.7711 3.2210 0.6637 16 6 3.8041 3.1740 -1.4921 17 6 4.4956 4.5330 -1.6372 18 6 6.0047 4.3509 -1.4555 19 8 6.2619 3.7635 -0.1784 20 6 5.6795 2.4706 -0.0014 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3632 -1.0276 -0.0005 24 1 1.6887 1.8464 0.8899 25 1 1.6886 1.8465 -0.8900 26 1 2.8445 2.7069 3.3739 27 1 4.1456 2.5049 -2.2819 28 1 2.7243 3.3046 -1.5646 29 1 4.2944 4.9400 -2.6281 30 1 4.1172 5.2172 -0.8777 31 1 6.3892 3.6988 -2.2397 32 1 6.4978 5.3211 -1.5155 33 1 5.9373 2.0866 0.9856 34 1 6.0605 1.7935 -0.7660 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260178139.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:07 Heat of formation + Delta-G solvation = -125.409218 kcal Electronic energy + Delta-G solvation = -15464.049721 eV Core-core repulsion = 12974.861320 eV Total energy + Delta-G solvation = -2489.188402 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.30161 -38.53600 -36.22739 -34.13910 -32.48336 -29.82143 -27.65270 -26.56135 -25.44320 -24.02791 -22.02195 -20.68604 -18.13559 -17.36383 -16.92736 -16.64232 -16.48441 -16.09713 -15.67444 -15.27105 -14.85563 -14.63009 -13.82179 -13.42444 -13.38445 -13.11816 -12.73153 -12.52784 -12.32572 -12.20832 -11.98109 -11.86319 -11.53809 -11.24158 -10.91822 -10.77007 -10.44075 -10.22014 -9.94159 -7.99492 -6.10381 1.40670 1.43949 1.52938 2.47654 3.12482 3.23994 3.36164 4.08842 4.16341 4.18401 4.39321 4.51948 4.53287 4.61724 4.67738 4.72667 4.81640 4.86131 4.92715 4.97472 5.07938 5.18168 5.22373 5.33509 5.48548 5.59578 5.67204 5.81512 6.15579 6.42326 6.50928 6.70994 6.87278 7.55127 8.98919 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.023695 B = 0.013320 C = 0.009398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.390651 B = 2101.604693 C = 2978.537252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.412 6.412 3 C 0.077 3.923 4 C 0.050 3.950 5 H 0.016 0.984 6 C -0.514 4.514 7 H 0.040 0.960 8 C 0.032 3.968 9 N -0.901 5.901 10 Si 0.935 3.065 11 H -0.278 1.278 12 H -0.285 1.285 13 H -0.276 1.276 14 C -0.102 4.102 15 H 0.080 0.920 16 C -0.120 4.120 17 C -0.147 4.147 18 C 0.055 3.945 19 O -0.413 6.413 20 C 0.093 3.907 21 H 0.027 0.973 22 H 0.046 0.954 23 H 0.095 0.905 24 H 0.053 0.947 25 H 0.023 0.977 26 H 0.258 0.742 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.094 0.906 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.464 2.953 -7.291 7.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.331 6.331 3 C 0.001 3.999 4 C 0.031 3.969 5 H 0.034 0.966 6 C -0.552 4.552 7 H 0.059 0.941 8 C -0.167 4.167 9 N -0.541 5.541 10 Si 0.763 3.237 11 H -0.204 1.204 12 H -0.211 1.211 13 H -0.201 1.201 14 C -0.122 4.122 15 H 0.098 0.902 16 C -0.157 4.157 17 C -0.184 4.184 18 C -0.022 4.022 19 O -0.332 6.332 20 C 0.017 3.983 21 H 0.046 0.954 22 H 0.064 0.936 23 H 0.113 0.887 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.126 0.874 33 H 0.092 0.908 34 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.313 3.005 -7.015 7.638 hybrid contribution -0.382 -0.463 0.967 1.138 sum -0.694 2.542 -6.047 6.596 Atomic orbital electron populations 1.22777 0.81553 1.02863 0.99527 1.87843 1.19744 1.30221 1.95323 1.22609 0.96388 0.82693 0.98224 1.18664 0.90429 0.92974 0.94802 0.96585 1.21159 1.33478 1.08773 0.91808 0.94150 1.25373 0.95208 0.95138 1.00996 1.69878 1.42682 1.15678 1.25845 0.85890 0.77773 0.79223 0.80854 1.20403 1.21056 1.20118 1.21558 0.95135 0.98545 0.96927 0.90224 1.21757 1.00064 0.96705 0.97182 1.22138 0.96320 0.97248 1.02743 1.22742 0.95435 0.98915 0.85075 1.87841 1.75137 1.34056 1.36189 1.22310 0.93001 0.82543 1.00470 0.95430 0.93568 0.88662 0.92858 0.95887 0.93225 0.92303 0.92452 0.88760 0.92564 0.92662 0.87434 0.90823 0.94409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.04 11.01 113.37 1.25 2.29 16 2 O -0.41 -19.33 10.46 -148.98 -1.56 -20.88 16 3 C 0.08 3.68 5.02 71.98 0.36 4.04 16 4 C 0.05 2.49 1.92 -11.54 -0.02 2.46 16 5 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 6 C -0.51 -28.09 7.02 25.60 0.18 -27.91 16 7 H 0.04 2.25 7.82 -2.91 -0.02 2.23 16 8 C 0.03 1.74 5.10 84.65 0.43 2.17 16 9 N -0.90 -49.60 9.44 21.45 0.20 -49.40 16 10 Si 0.94 44.05 29.54 68.60 2.03 46.08 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 13 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 14 C -0.10 -4.62 1.69 -10.70 -0.02 -4.63 16 15 H 0.08 4.15 6.17 -2.39 -0.01 4.14 16 16 C -0.12 -4.33 5.00 30.71 0.15 -4.17 16 17 C -0.15 -4.44 6.14 30.68 0.19 -4.25 16 18 C 0.05 1.66 6.84 72.01 0.49 2.15 16 19 O -0.41 -16.78 10.76 -148.98 -1.60 -18.38 16 20 C 0.09 4.08 5.76 72.01 0.41 4.50 16 21 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 22 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 23 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 24 H 0.05 2.83 6.04 -2.39 -0.01 2.81 16 25 H 0.02 1.00 6.43 -2.39 -0.02 0.98 16 26 H 0.26 13.78 8.31 -92.71 -0.77 13.01 16 27 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.06 2.05 6.64 -2.39 -0.02 2.04 16 29 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.07 3.64 7.18 -2.39 -0.02 3.62 16 34 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 Total: -1.00 -60.05 267.02 3.55 -56.50 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 1.06 Total: 9.44 kcal Atomic # 6 Polarization: -26.79 SS G_CDS: 3.43 Total: -23.36 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: 0.20 Total: -49.40 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -3.16 Total: -39.26 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -60.05 3.55 -56.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260178139.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.909 kcal (2) G-P(sol) polarization free energy of solvation -60.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds