Wall clock time and date at job start Mon Mar 30 2020 02:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47806 * 2 1 4 4 C 1.53090 * 109.48355 * 239.96545 * 2 1 3 5 5 C 1.53181 * 109.21540 * 182.43810 * 4 2 1 6 6 H 1.09001 * 109.49753 * 297.05189 * 5 4 2 7 7 O 1.42901 * 109.60019 * 176.78256 * 5 4 2 8 8 C 1.53179 * 109.03228 * 56.88936 * 5 4 2 9 9 H 1.08993 * 109.52603 * 63.04620 * 8 5 4 10 10 C 1.52998 * 109.52340 * 183.17632 * 8 5 4 11 11 C 1.50692 * 109.47199 * 292.87979 * 10 8 5 12 12 H 1.08005 * 120.00316 * 354.62085 * 11 10 8 13 13 C 1.37873 * 120.00181 * 174.61498 * 11 10 8 14 14 N 1.31524 * 120.00153 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00077 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47193 * 269.99733 * 15 13 11 17 17 H 1.48500 * 109.46999 * 29.99332 * 15 13 11 18 18 H 1.48498 * 109.47481 * 149.99688 * 15 13 11 19 19 C 1.53099 * 109.21011 * 303.11199 * 8 5 4 20 20 H 1.08994 * 109.48076 * 297.58847 * 19 8 5 21 21 C 1.53006 * 109.47758 * 177.55994 * 19 8 5 22 22 O 1.42898 * 109.48096 * 120.01928 * 2 1 3 23 23 H 1.08997 * 109.47531 * 299.97330 * 1 2 3 24 24 H 1.08997 * 109.47016 * 59.97840 * 1 2 3 25 25 H 1.09003 * 109.47015 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.52306 * 302.31780 * 4 2 1 27 27 H 1.09009 * 109.52110 * 62.43913 * 4 2 1 28 28 H 0.96702 * 113.99757 * 60.41228 * 7 5 4 29 29 H 1.09008 * 109.46703 * 172.88293 * 10 8 5 30 30 H 1.08993 * 109.47204 * 52.88744 * 10 8 5 31 31 H 0.96995 * 119.99987 * 180.02562 * 14 13 11 32 32 H 1.09000 * 109.47047 * 66.10705 * 21 19 8 33 33 H 1.08996 * 109.46986 * 186.11057 * 21 19 8 34 34 H 1.09000 * 109.46831 * 306.10386 * 21 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0406 -0.7224 -1.2494 5 6 3.5712 -0.7723 -1.2128 6 1 3.9690 0.2421 -1.2427 7 8 4.0538 -1.5102 -2.3374 8 6 4.0177 -1.4600 0.0810 9 1 3.6623 -2.4903 0.0873 10 6 5.5452 -1.4454 0.1669 11 6 6.1176 -2.3241 -0.9153 12 1 5.4593 -2.9090 -1.5405 13 6 7.4816 -2.3813 -1.1074 14 7 7.9812 -3.1478 -2.0522 15 14 8.6204 -1.3700 -0.0257 16 1 8.8391 -0.0386 -0.6458 17 1 8.0052 -1.1967 1.3147 18 1 9.9221 -2.0708 0.1140 19 6 3.4307 -0.7090 1.2791 20 1 3.8192 0.3092 1.2958 21 6 3.8227 -1.4262 2.5726 22 8 2.0065 -0.6740 1.1665 23 1 -0.3634 0.5134 0.8902 24 1 -0.3633 0.5142 -0.8898 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6443 -1.7375 -1.2708 27 1 1.7139 -0.1851 -2.1399 28 1 3.8074 -1.1305 -3.1920 29 1 5.8578 -1.8195 1.1419 30 1 5.9067 -0.4256 0.0361 31 1 8.9409 -3.1883 -2.1871 32 1 4.9016 -1.3591 2.7126 33 1 3.3170 -0.9563 3.4161 34 1 3.5287 -2.4739 2.5105 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260402353.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:50 Heat of formation + Delta-G solvation = -111.946225 kcal Electronic energy + Delta-G solvation = -15384.959950 eV Core-core repulsion = 12896.355347 eV Total energy + Delta-G solvation = -2488.604602 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.55845 -36.08051 -34.34192 -32.54333 -31.73929 -28.99756 -28.61523 -25.25410 -22.30296 -21.89150 -20.77339 -19.52405 -17.10138 -16.19891 -15.91708 -15.03500 -14.78581 -14.28558 -13.94000 -13.22404 -12.83346 -12.73002 -12.45188 -12.14069 -11.91802 -11.88760 -11.61573 -11.31053 -11.13251 -10.73702 -10.56284 -10.45619 -9.90293 -9.77396 -9.59298 -9.28372 -8.87760 -8.76113 -8.35832 -5.85012 -3.77876 3.36497 3.44521 3.46419 3.93020 4.56788 4.76984 4.95660 5.11607 5.20082 5.36487 5.49646 5.50897 5.60031 5.66089 5.72070 5.76896 5.90545 5.93381 6.14484 6.19759 6.25928 6.27804 6.43635 6.53142 6.73432 6.81521 7.26834 7.40864 7.59498 7.93424 8.47797 8.78390 9.36550 9.77445 11.28923 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.040039 B = 0.009799 C = 0.008405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.157175 B = 2856.626224 C = 3330.434701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.091 3.909 3 H 0.053 0.947 4 C -0.185 4.185 5 C 0.118 3.882 6 H 0.042 0.958 7 O -0.518 6.518 8 C -0.095 4.095 9 H 0.078 0.922 10 C -0.006 4.006 11 C -0.486 4.486 12 H 0.091 0.909 13 C 0.060 3.940 14 N -0.908 5.908 15 Si 0.869 3.131 16 H -0.281 1.281 17 H -0.269 1.269 18 H -0.290 1.290 19 C 0.090 3.910 20 H 0.052 0.948 21 C -0.140 4.140 22 O -0.383 6.383 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.351 0.649 29 H 0.019 0.981 30 H 0.007 0.993 31 H 0.258 0.742 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.146 7.627 4.308 14.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.033 3.967 3 H 0.070 0.930 4 C -0.223 4.223 5 C 0.058 3.942 6 H 0.060 0.940 7 O -0.320 6.320 8 C -0.114 4.114 9 H 0.097 0.903 10 C -0.043 4.043 11 C -0.524 4.524 12 H 0.109 0.891 13 C -0.139 4.139 14 N -0.549 5.549 15 Si 0.697 3.303 16 H -0.207 1.207 17 H -0.194 1.194 18 H -0.216 1.216 19 C 0.033 3.967 20 H 0.070 0.930 21 C -0.197 4.197 22 O -0.303 6.303 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.195 0.805 29 H 0.037 0.963 30 H 0.026 0.974 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.849 7.101 4.855 14.642 hybrid contribution 0.702 1.097 -0.247 1.326 sum -11.147 8.198 4.608 14.584 Atomic orbital electron populations 1.21749 0.93514 1.02771 1.01895 1.21928 0.94582 0.94802 0.85417 0.92953 1.23092 0.98892 1.02228 0.98089 1.21637 0.89509 0.94381 0.88632 0.94033 1.87131 1.77679 1.52848 1.14324 1.21755 0.99127 0.99708 0.90788 0.90322 1.19633 0.89790 0.96811 0.98061 1.21236 0.92030 1.24480 1.14669 0.89104 1.25007 0.98076 0.95577 0.95225 1.69916 1.12057 1.40233 1.32735 0.86958 0.80735 0.80638 0.81931 1.20750 1.19361 1.21625 1.22220 0.79843 0.98458 0.96156 0.93030 1.21774 1.01829 1.00974 0.95155 1.87859 1.21924 1.78006 1.42501 0.92127 0.91454 0.91867 0.90523 0.91551 0.80467 0.96317 0.97440 0.93214 0.90465 0.92615 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.56 37.16 0.36 -1.23 16 2 C 0.09 1.28 3.27 -26.69 -0.09 1.19 16 3 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.18 -2.76 5.05 -26.59 -0.13 -2.90 16 5 C 0.12 2.21 2.95 -26.55 -0.08 2.13 16 6 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 7 O -0.52 -10.90 10.31 -35.23 -0.36 -11.26 16 8 C -0.09 -1.95 1.68 -90.48 -0.15 -2.10 16 9 H 0.08 1.76 8.13 -51.93 -0.42 1.33 16 10 C -0.01 -0.14 3.37 -27.89 -0.09 -0.23 16 11 C -0.49 -14.05 8.31 -34.45 -0.29 -14.34 16 12 H 0.09 2.88 6.46 -52.48 -0.34 2.54 16 13 C 0.06 1.79 5.47 -17.82 -0.10 1.69 16 14 N -0.91 -28.79 13.96 55.43 0.77 -28.02 16 15 Si 0.87 22.17 27.37 -169.99 -4.65 17.52 16 16 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.27 -6.52 6.70 56.52 0.38 -6.15 16 18 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 19 C 0.09 1.57 2.77 -26.68 -0.07 1.50 16 20 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 21 C -0.14 -2.23 9.11 37.16 0.34 -1.89 16 22 O -0.38 -6.37 10.05 -35.23 -0.35 -6.73 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.07 0.83 8.14 -51.92 -0.42 0.40 16 28 H 0.35 5.65 9.09 45.56 0.41 6.06 16 29 H 0.02 0.45 5.74 -51.92 -0.30 0.15 16 30 H 0.01 0.18 7.27 -51.93 -0.38 -0.20 16 31 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 32 H 0.08 1.24 6.67 -51.93 -0.35 0.90 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 267.22 15.07 4.03 4.03 Total: -1.00 -32.75 267.22 -5.63 -38.38 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -4.75 Total: 2.26 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -0.31 Total: -16.18 kcal Atomic # 7 Polarization: -28.79 SS G_CDS: 0.77 Total: -28.02 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.72 Total: -17.99 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.65 Total: 17.52 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.75 -5.63 -38.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260402353.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.566 kcal (2) G-P(sol) polarization free energy of solvation -32.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds