Wall clock time and date at job start Mon Mar 30 2020 02:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47806 * 2 1 4 4 C 1.53090 * 109.48355 * 239.96545 * 2 1 3 5 5 C 1.53181 * 109.21540 * 182.43810 * 4 2 1 6 6 H 1.09001 * 109.49753 * 297.05189 * 5 4 2 7 7 O 1.42901 * 109.60019 * 176.78256 * 5 4 2 8 8 C 1.53179 * 109.03228 * 56.88936 * 5 4 2 9 9 H 1.08993 * 109.52603 * 63.04620 * 8 5 4 10 10 C 1.52998 * 109.52340 * 183.17632 * 8 5 4 11 11 C 1.50692 * 109.47199 * 292.87979 * 10 8 5 12 12 H 1.08005 * 120.00316 * 354.62085 * 11 10 8 13 13 C 1.37873 * 120.00181 * 174.61498 * 11 10 8 14 14 N 1.31524 * 120.00153 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00077 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47193 * 269.99733 * 15 13 11 17 17 H 1.48500 * 109.46999 * 29.99332 * 15 13 11 18 18 H 1.48498 * 109.47481 * 149.99688 * 15 13 11 19 19 C 1.53099 * 109.21011 * 303.11199 * 8 5 4 20 20 H 1.08994 * 109.48076 * 297.58847 * 19 8 5 21 21 C 1.53006 * 109.47758 * 177.55994 * 19 8 5 22 22 O 1.42898 * 109.48096 * 120.01928 * 2 1 3 23 23 H 1.08997 * 109.47531 * 299.97330 * 1 2 3 24 24 H 1.08997 * 109.47016 * 59.97840 * 1 2 3 25 25 H 1.09003 * 109.47015 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.52306 * 302.31780 * 4 2 1 27 27 H 1.09009 * 109.52110 * 62.43913 * 4 2 1 28 28 H 0.96702 * 113.99757 * 60.41228 * 7 5 4 29 29 H 1.09008 * 109.46703 * 172.88293 * 10 8 5 30 30 H 1.08993 * 109.47204 * 52.88744 * 10 8 5 31 31 H 0.96995 * 119.99987 * 180.02562 * 14 13 11 32 32 H 1.09000 * 109.47047 * 66.10705 * 21 19 8 33 33 H 1.08996 * 109.46986 * 186.11057 * 21 19 8 34 34 H 1.09000 * 109.46831 * 306.10386 * 21 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0406 -0.7224 -1.2494 5 6 3.5712 -0.7723 -1.2128 6 1 3.9690 0.2421 -1.2427 7 8 4.0538 -1.5102 -2.3374 8 6 4.0177 -1.4600 0.0810 9 1 3.6623 -2.4903 0.0873 10 6 5.5452 -1.4454 0.1669 11 6 6.1176 -2.3241 -0.9153 12 1 5.4593 -2.9090 -1.5405 13 6 7.4816 -2.3813 -1.1074 14 7 7.9812 -3.1478 -2.0522 15 14 8.6204 -1.3700 -0.0257 16 1 8.8391 -0.0386 -0.6458 17 1 8.0052 -1.1967 1.3147 18 1 9.9221 -2.0708 0.1140 19 6 3.4307 -0.7090 1.2791 20 1 3.8192 0.3092 1.2958 21 6 3.8227 -1.4262 2.5726 22 8 2.0065 -0.6740 1.1665 23 1 -0.3634 0.5134 0.8902 24 1 -0.3633 0.5142 -0.8898 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6443 -1.7375 -1.2708 27 1 1.7139 -0.1851 -2.1399 28 1 3.8074 -1.1305 -3.1920 29 1 5.8578 -1.8195 1.1419 30 1 5.9067 -0.4256 0.0361 31 1 8.9409 -3.1883 -2.1871 32 1 4.9016 -1.3591 2.7126 33 1 3.3170 -0.9563 3.4161 34 1 3.5287 -2.4739 2.5105 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260402353.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:50 Heat of formation + Delta-G solvation = -136.291029 kcal Electronic energy + Delta-G solvation = -15386.015620 eV Core-core repulsion = 12896.355347 eV Total energy + Delta-G solvation = -2489.660272 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.91191 -37.57585 -35.91028 -34.34661 -33.37055 -30.54318 -30.00152 -26.86778 -23.88102 -23.33897 -22.13481 -21.08413 -19.03292 -17.80999 -17.37870 -16.53554 -16.18597 -15.79002 -15.77079 -14.73962 -14.30386 -14.24434 -14.02123 -13.51449 -13.27404 -13.04303 -12.98119 -12.85969 -12.68848 -12.36524 -12.09875 -11.92833 -11.71154 -11.39772 -11.35354 -10.91846 -10.70208 -10.56499 -10.27053 -8.13482 -6.11543 1.35492 1.37689 1.48556 2.42911 2.74729 3.18076 3.40605 3.76505 3.89963 3.92025 4.11689 4.20133 4.36479 4.51562 4.53139 4.58902 4.71938 4.74965 4.87913 4.95546 5.00337 5.06187 5.08454 5.23655 5.25798 5.32303 5.45534 5.57370 5.76811 6.33625 6.52917 6.98395 7.16835 7.47187 9.03722 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.040039 B = 0.009799 C = 0.008405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.157175 B = 2856.626224 C = 3330.434701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.082 3.918 3 H 0.068 0.932 4 C -0.172 4.172 5 C 0.111 3.889 6 H 0.048 0.952 7 O -0.556 6.556 8 C -0.095 4.095 9 H 0.048 0.952 10 C -0.002 4.002 11 C -0.486 4.486 12 H 0.048 0.952 13 C -0.006 4.006 14 N -0.960 5.960 15 Si 0.939 3.061 16 H -0.272 1.272 17 H -0.245 1.245 18 H -0.289 1.289 19 C 0.097 3.903 20 H 0.065 0.935 21 C -0.140 4.140 22 O -0.391 6.391 23 H 0.069 0.931 24 H 0.091 0.909 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.096 0.904 28 H 0.369 0.631 29 H 0.024 0.976 30 H 0.014 0.986 31 H 0.259 0.741 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.139 9.930 5.743 17.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.025 3.975 3 H 0.086 0.914 4 C -0.210 4.210 5 C 0.052 3.948 6 H 0.066 0.934 7 O -0.361 6.361 8 C -0.114 4.114 9 H 0.067 0.933 10 C -0.039 4.039 11 C -0.525 4.525 12 H 0.066 0.934 13 C -0.200 4.200 14 N -0.603 5.603 15 Si 0.764 3.236 16 H -0.198 1.198 17 H -0.169 1.169 18 H -0.215 1.215 19 C 0.039 3.961 20 H 0.083 0.917 21 C -0.197 4.197 22 O -0.311 6.311 23 H 0.088 0.912 24 H 0.110 0.890 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.115 0.885 28 H 0.216 0.784 29 H 0.043 0.957 30 H 0.032 0.968 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.876 9.418 6.297 17.151 hybrid contribution 0.933 0.327 -0.786 1.264 sum -11.943 9.745 5.510 16.370 Atomic orbital electron populations 1.21754 0.91077 1.02915 1.03634 1.22240 0.96478 0.94980 0.83833 0.91427 1.22967 0.95701 1.02103 1.00269 1.21772 0.92196 0.93840 0.87032 0.93377 1.87071 1.78708 1.54254 1.16049 1.21700 0.96837 0.99037 0.93822 0.93350 1.19554 0.92322 0.95746 0.96307 1.21468 0.91765 1.24241 1.15003 0.93391 1.25943 1.00100 0.97093 0.96903 1.70094 1.12464 1.42571 1.35165 0.85826 0.78137 0.78843 0.80833 1.19751 1.16857 1.21548 1.22108 0.80434 0.98589 0.94928 0.91685 1.21782 1.01894 1.00591 0.95469 1.87866 1.21058 1.78547 1.43665 0.91161 0.88982 0.92541 0.92077 0.88533 0.78390 0.95737 0.96773 0.93239 0.90758 0.90124 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.56 71.98 0.69 -1.89 16 2 C 0.08 2.06 3.27 30.62 0.10 2.16 16 3 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 4 C -0.17 -4.83 5.05 30.69 0.15 -4.67 16 5 C 0.11 4.06 2.95 30.71 0.09 4.15 16 6 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 7 O -0.56 -23.95 10.31 -148.98 -1.54 -25.48 16 8 C -0.09 -3.87 1.68 -10.70 -0.02 -3.89 16 9 H 0.05 2.23 8.13 -2.39 -0.02 2.21 16 10 C 0.00 -0.10 3.37 29.84 0.10 0.00 16 11 C -0.49 -28.81 8.31 25.60 0.21 -28.60 16 12 H 0.05 3.20 6.46 -2.91 -0.02 3.18 16 13 C -0.01 -0.38 5.47 84.65 0.46 0.08 16 14 N -0.96 -62.65 13.96 21.45 0.30 -62.35 16 15 Si 0.94 45.52 27.37 68.60 1.88 47.40 16 16 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 17 H -0.25 -10.85 6.70 99.48 0.67 -10.18 16 18 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 19 C 0.10 3.17 2.77 30.63 0.08 3.26 16 20 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 21 C -0.14 -4.18 9.11 71.98 0.66 -3.52 16 22 O -0.39 -12.09 10.05 -148.98 -1.50 -13.59 16 23 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.10 2.11 8.14 -2.38 -0.02 2.09 16 28 H 0.37 12.06 9.09 -74.06 -0.67 11.39 16 29 H 0.02 1.14 5.74 -2.38 -0.01 1.12 16 30 H 0.01 0.65 7.27 -2.39 -0.02 0.63 16 31 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 32 H 0.07 2.23 6.67 -2.39 -0.02 2.22 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -72.16 267.22 2.03 -70.13 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.36 Total: 16.80 kcal Atomic # 6 Polarization: -35.45 SS G_CDS: 2.53 Total: -32.92 kcal Atomic # 7 Polarization: -62.65 SS G_CDS: 0.30 Total: -62.35 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -3.03 Total: -39.07 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.88 Total: 47.40 kcal Total: -72.16 2.03 -70.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260402353.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.162 kcal (2) G-P(sol) polarization free energy of solvation -72.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds