Wall clock time and date at job start Mon Mar 30 2020 02:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.48478 * 2 1 4 4 C 1.53090 * 109.48233 * 239.97688 * 2 1 3 5 5 C 1.53178 * 109.16594 * 182.39323 * 4 2 1 6 6 H 1.08991 * 109.54756 * 297.11441 * 5 4 2 7 7 O 1.42904 * 109.54320 * 176.93509 * 5 4 2 8 8 C 1.53184 * 109.03423 * 56.98137 * 5 4 2 9 9 H 1.09001 * 109.52395 * 183.11088 * 8 5 4 10 10 C 1.53000 * 109.52293 * 62.92572 * 8 5 4 11 11 C 1.50697 * 109.47254 * 66.89642 * 10 8 5 12 12 H 1.08001 * 120.00224 * 5.36229 * 11 10 8 13 13 C 1.37885 * 120.00161 * 185.36405 * 11 10 8 14 14 N 1.31517 * 119.99494 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 120.00036 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47591 * 59.99453 * 15 13 11 17 17 H 1.48496 * 109.47078 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46997 * 299.99514 * 15 13 11 19 19 C 1.53092 * 109.16279 * 303.02138 * 8 5 4 20 20 H 1.09000 * 109.47605 * 297.62110 * 19 8 5 21 21 C 1.53003 * 109.48011 * 177.60474 * 19 8 5 22 22 O 1.42895 * 109.41849 * 57.60696 * 19 8 5 23 23 H 1.09000 * 109.46808 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46983 * 299.99724 * 1 2 3 25 25 H 1.09000 * 109.47284 * 59.99945 * 1 2 3 26 26 H 1.09001 * 109.52266 * 302.30014 * 4 2 1 27 27 H 1.08997 * 109.52271 * 62.48768 * 4 2 1 28 28 H 0.96693 * 113.99905 * 60.00557 * 7 5 4 29 29 H 1.08994 * 109.47146 * 186.90175 * 10 8 5 30 30 H 1.09004 * 109.47006 * 306.89739 * 10 8 5 31 31 H 0.97005 * 119.99214 * 180.02562 * 14 13 11 32 32 H 1.09000 * 109.46781 * 53.59755 * 21 19 8 33 33 H 1.08997 * 109.46916 * 173.59627 * 21 19 8 34 34 H 1.08995 * 109.46545 * 293.60139 * 21 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7221 -1.2496 5 6 3.5711 -0.7704 -1.2124 6 1 3.9688 0.2440 -1.2411 7 8 4.0537 -1.5051 -2.3391 8 6 4.0179 -1.4596 0.0806 9 1 5.1062 -1.4492 0.1417 10 6 3.5180 -2.9056 0.0884 11 6 4.2198 -3.6855 -0.9934 12 1 5.0104 -3.2235 -1.5660 13 6 3.8525 -4.9891 -1.2524 14 7 2.8900 -5.5519 -0.5548 15 14 4.7228 -5.9560 -2.5928 16 1 6.1709 -6.0473 -2.2766 17 1 4.1465 -7.3223 -2.6711 18 1 4.5432 -5.2671 -3.8960 19 6 3.4309 -0.7090 1.2789 20 1 3.8194 0.3093 1.2956 21 6 3.8235 -1.4260 2.5722 22 8 2.0069 -0.6741 1.1664 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.6445 -1.7374 -1.2710 27 1 1.7146 -0.1843 -2.1398 28 1 3.8015 -1.1269 -3.1925 29 1 3.7290 -3.3578 1.0574 30 1 2.4432 -2.9195 -0.0927 31 1 2.6319 -6.4691 -0.7367 32 1 4.9055 -1.5540 2.6026 33 1 3.5037 -0.8321 3.4283 34 1 3.3410 -2.4027 2.6068 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260402357.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:53 Heat of formation + Delta-G solvation = -109.941972 kcal Electronic energy + Delta-G solvation = -15637.253231 eV Core-core repulsion = 13148.735539 eV Total energy + Delta-G solvation = -2488.517691 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.50510 -35.95686 -33.92090 -32.52879 -31.54429 -28.84804 -27.78628 -25.20920 -22.55483 -21.90274 -21.26070 -18.35642 -16.65824 -15.97238 -15.88254 -15.27987 -14.56842 -14.20145 -13.79025 -13.31706 -12.48789 -12.38139 -12.13420 -11.94019 -11.73514 -11.57651 -11.35502 -11.14155 -10.92535 -10.75143 -10.45515 -10.20265 -9.88801 -9.81732 -9.39704 -8.96897 -8.66212 -8.58866 -8.09473 -5.75467 -3.69901 3.46749 3.50109 3.54173 4.14431 4.66622 4.89969 5.12595 5.33815 5.42638 5.53686 5.62599 5.64897 5.70078 5.86072 5.90105 5.93270 5.96382 6.11831 6.26292 6.39401 6.44824 6.56370 6.67068 6.74956 6.84163 7.22058 7.81366 7.90238 8.04507 8.24625 8.50778 8.72557 9.36979 9.88867 11.36714 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.033037 B = 0.010596 C = 0.009948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.324727 B = 2641.973986 C = 2813.908541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.094 3.906 3 H 0.046 0.954 4 C -0.183 4.183 5 C 0.120 3.880 6 H 0.027 0.973 7 O -0.520 6.520 8 C -0.110 4.110 9 H 0.069 0.931 10 C 0.036 3.964 11 C -0.479 4.479 12 H 0.067 0.933 13 C 0.047 3.953 14 N -0.907 5.907 15 Si 0.889 3.111 16 H -0.282 1.282 17 H -0.293 1.293 18 H -0.280 1.280 19 C 0.096 3.904 20 H 0.040 0.960 21 C -0.141 4.141 22 O -0.372 6.372 23 H 0.066 0.934 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.096 0.904 27 H 0.059 0.941 28 H 0.346 0.654 29 H 0.014 0.986 30 H 0.027 0.973 31 H 0.255 0.745 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.675 11.970 0.695 12.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.036 3.964 3 H 0.064 0.936 4 C -0.220 4.220 5 C 0.061 3.939 6 H 0.045 0.955 7 O -0.322 6.322 8 C -0.129 4.129 9 H 0.087 0.913 10 C -0.001 4.001 11 C -0.517 4.517 12 H 0.085 0.915 13 C -0.151 4.151 14 N -0.549 5.549 15 Si 0.718 3.282 16 H -0.208 1.208 17 H -0.219 1.219 18 H -0.206 1.206 19 C 0.038 3.962 20 H 0.058 0.942 21 C -0.198 4.198 22 O -0.292 6.292 23 H 0.085 0.915 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.114 0.886 27 H 0.077 0.923 28 H 0.191 0.809 29 H 0.032 0.968 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.633 11.338 1.329 11.531 hybrid contribution 0.342 -0.090 -1.513 1.554 sum -1.292 11.248 -0.184 11.323 Atomic orbital electron populations 1.21740 0.93623 1.03122 1.01493 1.21889 0.94674 0.94078 0.85808 0.93645 1.23006 0.98134 1.03581 0.97313 1.21581 0.91438 0.92259 0.88633 0.95478 1.87168 1.77277 1.53474 1.14289 1.21957 1.00083 1.00237 0.90642 0.91280 1.19118 0.97189 0.86891 0.96871 1.21325 1.18182 0.95838 1.16386 0.91504 1.24979 0.95600 0.98011 0.96523 1.69979 1.30132 1.13476 1.41318 0.86721 0.79709 0.78799 0.82985 1.20757 1.21909 1.20590 1.22087 0.80884 0.96967 0.96228 0.94176 1.21758 1.01358 1.01884 0.94817 1.87903 1.21256 1.77922 1.42130 0.91472 0.92331 0.91674 0.88583 0.92270 0.80940 0.96754 0.95426 0.93546 0.91374 0.93109 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.56 37.15 0.36 -1.62 16 2 C 0.09 1.52 3.26 -26.69 -0.09 1.43 16 3 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.18 -3.22 4.69 -26.59 -0.12 -3.35 16 5 C 0.12 2.29 3.24 -26.54 -0.09 2.20 16 6 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 7 O -0.52 -10.75 10.02 -35.23 -0.35 -11.11 16 8 C -0.11 -2.33 2.08 -90.48 -0.19 -2.52 16 9 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 10 C 0.04 0.94 3.88 -27.88 -0.11 0.84 16 11 C -0.48 -13.79 7.53 -34.44 -0.26 -14.05 16 12 H 0.07 1.94 6.26 -52.49 -0.33 1.61 16 13 C 0.05 1.40 5.46 -17.82 -0.10 1.30 16 14 N -0.91 -28.21 13.29 55.43 0.74 -27.47 16 15 Si 0.89 22.82 29.54 -169.99 -5.02 17.80 16 16 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 17 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 18 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 19 C 0.10 1.75 2.95 -26.68 -0.08 1.67 16 20 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 21 C -0.14 -2.41 8.96 37.16 0.33 -2.08 16 22 O -0.37 -7.12 9.59 -35.23 -0.34 -7.45 16 23 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.10 2.07 6.48 -51.93 -0.34 1.74 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.35 5.43 9.08 45.56 0.41 5.85 16 29 H 0.01 0.40 6.19 -51.93 -0.32 0.08 16 30 H 0.03 0.79 6.02 -51.93 -0.31 0.48 16 31 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.50 6.62 -51.93 -0.34 1.16 16 LS Contribution 265.74 15.07 4.00 4.00 Total: -1.00 -32.63 265.74 -5.90 -38.53 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -4.59 Total: 1.88 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -0.34 Total: -16.18 kcal Atomic # 7 Polarization: -28.21 SS G_CDS: 0.74 Total: -27.47 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.69 Total: -18.56 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.63 -5.90 -38.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260402357.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.407 kcal (2) G-P(sol) polarization free energy of solvation -32.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds