Wall clock time and date at job start Mon Mar 30 2020 02:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.48478 * 2 1 4 4 C 1.53090 * 109.48233 * 239.97688 * 2 1 3 5 5 C 1.53178 * 109.16594 * 182.39323 * 4 2 1 6 6 H 1.08991 * 109.54756 * 297.11441 * 5 4 2 7 7 O 1.42904 * 109.54320 * 176.93509 * 5 4 2 8 8 C 1.53184 * 109.03423 * 56.98137 * 5 4 2 9 9 H 1.09001 * 109.52395 * 183.11088 * 8 5 4 10 10 C 1.53000 * 109.52293 * 62.92572 * 8 5 4 11 11 C 1.50697 * 109.47254 * 66.89642 * 10 8 5 12 12 H 1.08001 * 120.00224 * 5.36229 * 11 10 8 13 13 C 1.37885 * 120.00161 * 185.36405 * 11 10 8 14 14 N 1.31517 * 119.99494 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 120.00036 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47591 * 59.99453 * 15 13 11 17 17 H 1.48496 * 109.47078 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46997 * 299.99514 * 15 13 11 19 19 C 1.53092 * 109.16279 * 303.02138 * 8 5 4 20 20 H 1.09000 * 109.47605 * 297.62110 * 19 8 5 21 21 C 1.53003 * 109.48011 * 177.60474 * 19 8 5 22 22 O 1.42895 * 109.41849 * 57.60696 * 19 8 5 23 23 H 1.09000 * 109.46808 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46983 * 299.99724 * 1 2 3 25 25 H 1.09000 * 109.47284 * 59.99945 * 1 2 3 26 26 H 1.09001 * 109.52266 * 302.30014 * 4 2 1 27 27 H 1.08997 * 109.52271 * 62.48768 * 4 2 1 28 28 H 0.96693 * 113.99905 * 60.00557 * 7 5 4 29 29 H 1.08994 * 109.47146 * 186.90175 * 10 8 5 30 30 H 1.09004 * 109.47006 * 306.89739 * 10 8 5 31 31 H 0.97005 * 119.99214 * 180.02562 * 14 13 11 32 32 H 1.09000 * 109.46781 * 53.59755 * 21 19 8 33 33 H 1.08997 * 109.46916 * 173.59627 * 21 19 8 34 34 H 1.08995 * 109.46545 * 293.60139 * 21 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7221 -1.2496 5 6 3.5711 -0.7704 -1.2124 6 1 3.9688 0.2440 -1.2411 7 8 4.0537 -1.5051 -2.3391 8 6 4.0179 -1.4596 0.0806 9 1 5.1062 -1.4492 0.1417 10 6 3.5180 -2.9056 0.0884 11 6 4.2198 -3.6855 -0.9934 12 1 5.0104 -3.2235 -1.5660 13 6 3.8525 -4.9891 -1.2524 14 7 2.8900 -5.5519 -0.5548 15 14 4.7228 -5.9560 -2.5928 16 1 6.1709 -6.0473 -2.2766 17 1 4.1465 -7.3223 -2.6711 18 1 4.5432 -5.2671 -3.8960 19 6 3.4309 -0.7090 1.2789 20 1 3.8194 0.3093 1.2956 21 6 3.8235 -1.4260 2.5722 22 8 2.0069 -0.6741 1.1664 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.6445 -1.7374 -1.2710 27 1 1.7146 -0.1843 -2.1398 28 1 3.8015 -1.1269 -3.1925 29 1 3.7290 -3.3578 1.0574 30 1 2.4432 -2.9195 -0.0927 31 1 2.6319 -6.4691 -0.7367 32 1 4.9055 -1.5540 2.6026 33 1 3.5037 -0.8321 3.4283 34 1 3.3410 -2.4027 2.6068 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260402357.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:53 Heat of formation + Delta-G solvation = -133.785180 kcal Electronic energy + Delta-G solvation = -15638.287150 eV Core-core repulsion = 13148.735539 eV Total energy + Delta-G solvation = -2489.551611 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.96558 -37.46568 -35.59486 -34.34837 -33.22758 -30.28385 -29.55337 -26.87731 -24.56399 -23.32593 -22.59210 -19.94875 -18.55738 -17.75363 -17.30871 -16.81373 -16.38695 -15.90685 -15.32708 -14.75456 -14.08399 -13.96484 -13.71929 -13.59465 -13.18511 -12.91805 -12.85203 -12.76467 -12.65693 -12.55891 -12.36556 -11.83163 -11.58534 -11.39971 -11.13422 -10.80040 -10.39815 -10.33615 -10.20328 -8.03220 -6.04412 1.39796 1.43140 1.50714 2.50384 2.84531 3.27476 3.52291 3.81272 4.02135 4.04642 4.21587 4.25041 4.37696 4.55135 4.56662 4.60842 4.72928 4.86820 4.90199 5.02150 5.10788 5.15678 5.19977 5.30250 5.35931 5.53962 5.72440 5.88160 6.01479 6.45107 6.52419 7.08926 7.21945 7.58704 9.09184 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.033037 B = 0.010596 C = 0.009948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.324727 B = 2641.973986 C = 2813.908541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.086 3.914 3 H 0.079 0.921 4 C -0.176 4.176 5 C 0.117 3.883 6 H 0.067 0.933 7 O -0.553 6.553 8 C -0.112 4.112 9 H 0.064 0.936 10 C 0.048 3.952 11 C -0.483 4.483 12 H 0.066 0.934 13 C -0.013 4.013 14 N -0.947 5.947 15 Si 0.955 3.045 16 H -0.273 1.273 17 H -0.291 1.291 18 H -0.271 1.271 19 C 0.097 3.903 20 H 0.078 0.922 21 C -0.140 4.140 22 O -0.397 6.397 23 H 0.039 0.961 24 H 0.071 0.929 25 H 0.094 0.906 26 H 0.044 0.956 27 H 0.093 0.907 28 H 0.368 0.632 29 H -0.014 1.014 30 H -0.006 1.006 31 H 0.254 0.746 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.083 14.246 -0.142 14.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.029 3.971 3 H 0.097 0.903 4 C -0.214 4.214 5 C 0.058 3.942 6 H 0.084 0.916 7 O -0.359 6.359 8 C -0.131 4.131 9 H 0.082 0.918 10 C 0.011 3.989 11 C -0.522 4.522 12 H 0.084 0.916 13 C -0.207 4.207 14 N -0.590 5.590 15 Si 0.782 3.218 16 H -0.198 1.198 17 H -0.217 1.217 18 H -0.196 1.196 19 C 0.040 3.960 20 H 0.095 0.905 21 C -0.197 4.197 22 O -0.317 6.317 23 H 0.058 0.942 24 H 0.090 0.910 25 H 0.112 0.888 26 H 0.063 0.937 27 H 0.111 0.889 28 H 0.215 0.785 29 H 0.004 0.996 30 H 0.013 0.987 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.036 13.634 0.478 13.681 hybrid contribution 0.142 -0.766 -1.252 1.474 sum -0.894 12.867 -0.773 12.922 Atomic orbital electron populations 1.21762 0.92213 1.02043 1.03625 1.22190 0.95930 0.94999 0.83988 0.90290 1.22920 0.97231 1.01332 0.99868 1.21684 0.92225 0.93337 0.86935 0.91578 1.87050 1.77814 1.55064 1.15937 1.21903 0.99735 0.97505 0.93931 0.91790 1.18879 0.95023 0.90441 0.94560 1.21673 1.17787 0.96171 1.16539 0.91566 1.25852 0.96476 0.99361 0.99033 1.70136 1.31925 1.13739 1.43246 0.85648 0.78746 0.77201 0.80205 1.19807 1.21713 1.19624 1.22137 0.80704 0.98312 0.94857 0.90458 1.21758 1.01736 1.00336 0.95863 1.87897 1.21604 1.78767 1.43448 0.94154 0.90961 0.88775 0.93723 0.88902 0.78457 0.99590 0.98745 0.93711 0.90353 0.90375 0.94142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 9.56 71.98 0.69 -2.90 16 2 C 0.09 2.59 3.26 30.62 0.10 2.69 16 3 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 4 C -0.18 -5.95 4.69 30.68 0.14 -5.80 16 5 C 0.12 4.21 3.24 30.72 0.10 4.31 16 6 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 7 O -0.55 -22.18 10.02 -148.98 -1.49 -23.68 16 8 C -0.11 -4.67 2.08 -10.70 -0.02 -4.69 16 9 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 10 C 0.05 2.60 3.88 29.85 0.12 2.72 16 11 C -0.48 -28.45 7.53 25.60 0.19 -28.26 16 12 H 0.07 3.85 6.26 -2.91 -0.02 3.83 16 13 C -0.01 -0.78 5.46 84.66 0.46 -0.31 16 14 N -0.95 -60.99 13.29 21.45 0.28 -60.70 16 15 Si 0.96 47.45 29.54 68.60 2.03 49.48 16 16 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 17 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 18 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 19 C 0.10 3.39 2.95 30.63 0.09 3.48 16 20 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 21 C -0.14 -4.71 8.96 71.98 0.64 -4.06 16 22 O -0.40 -14.74 9.59 -148.98 -1.43 -16.17 16 23 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.04 1.98 6.48 -2.39 -0.02 1.96 16 27 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.37 10.83 9.08 -74.06 -0.67 10.16 16 29 H -0.01 -0.83 6.19 -2.39 -0.01 -0.85 16 30 H -0.01 -0.35 6.02 -2.38 -0.01 -0.37 16 31 H 0.25 15.61 8.31 -92.70 -0.77 14.83 16 32 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.04 1.63 6.62 -2.39 -0.02 1.62 16 Total: -1.00 -72.93 265.74 2.31 -70.62 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 0.40 Total: 13.28 kcal Atomic # 6 Polarization: -35.34 SS G_CDS: 2.52 Total: -32.83 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: 0.28 Total: -60.70 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -2.92 Total: -39.85 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -72.93 2.31 -70.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260402357.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.164 kcal (2) G-P(sol) polarization free energy of solvation -72.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds