Wall clock time and date at job start Mon Mar 30 2020 03:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30533 * 1 3 3 Si 1.86804 * 119.99918 * 2 1 4 4 H 1.48492 * 109.46911 * 274.97371 * 3 2 1 5 5 H 1.48498 * 109.47251 * 34.97491 * 3 2 1 6 6 H 1.48501 * 109.46578 * 154.97428 * 3 2 1 7 7 C 1.40588 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00063 * 186.29791 * 7 2 1 9 9 C 1.39133 * 119.99441 * 6.29596 * 7 2 1 10 10 S 1.76225 * 126.13855 * 352.31290 * 9 7 2 11 11 C 1.75985 * 90.25174 * 180.02562 * 10 9 7 12 12 O 1.35157 * 124.87367 * 180.02562 * 11 10 9 13 13 N 1.29933 * 110.25538 * 359.75661 * 11 10 9 14 14 C 1.31699 * 117.57687 * 0.45661 * 13 11 10 15 15 C 1.46824 * 122.90376 * 179.79644 * 14 13 11 16 16 O 1.21617 * 119.99463 * 179.43517 * 15 14 13 17 17 O 1.34917 * 120.00321 * 359.70535 * 15 14 13 18 18 H 0.97006 * 119.99795 * 0.02562 * 1 2 3 19 19 H 0.96699 * 113.99959 * 179.97438 * 12 11 10 20 20 H 0.96701 * 113.99953 * 179.72607 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 2.3817 2.1071 -1.3947 5 1 1.4933 2.6201 0.8025 6 1 3.5855 1.4120 0.5923 7 6 2.0083 -1.2175 0.0005 8 1 3.0833 -1.2203 0.1031 9 6 1.3188 -2.4188 -0.1311 10 16 -0.4320 -2.6191 -0.1178 11 6 -0.2428 -4.3555 -0.3328 12 8 -1.2619 -5.2391 -0.4187 13 7 1.0171 -4.6654 -0.4027 14 6 1.8924 -3.6871 -0.2975 15 6 3.3432 -3.9052 -0.3557 16 8 4.1042 -2.9610 -0.2628 17 8 3.8320 -5.1522 -0.5176 18 1 -0.4850 0.8401 -0.0004 19 1 -0.9785 -6.1561 -0.5365 20 1 4.7976 -5.1953 -0.5482 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260542178.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:37 Heat of formation + Delta-G solvation = -146.144260 kcal Electronic energy + Delta-G solvation = -12035.600855 eV Core-core repulsion = 9515.340991 eV Total energy + Delta-G solvation = -2520.259864 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 215.008 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.85705 -39.46709 -37.65014 -36.63940 -36.15961 -31.55506 -28.11501 -25.31113 -23.65781 -21.14560 -20.43290 -19.10339 -18.13983 -17.81880 -16.92104 -16.42584 -15.88284 -15.41587 -15.16162 -14.69787 -13.90362 -13.70932 -13.55558 -13.19266 -12.72696 -12.22422 -12.15651 -12.02999 -11.56625 -10.94785 -10.25544 -9.98571 -9.23272 -9.14501 -6.84254 0.37470 0.75312 1.22745 1.29624 1.42516 1.51984 1.54326 2.09202 2.40561 2.84263 3.00982 3.55350 4.35675 4.69706 4.99412 5.40352 5.68030 5.84215 6.04260 6.14373 6.74080 7.20249 7.58529 7.66052 Molecular weight = 215.01amu Principal moments of inertia in cm(-1) A = 0.028516 B = 0.014620 C = 0.009707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.681603 B = 1914.680750 C = 2883.766107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.013 3.987 3 Si 1.019 2.981 4 H -0.252 1.252 5 H -0.245 1.245 6 H -0.256 1.256 7 C -0.330 4.330 8 H 0.127 0.873 9 C -0.003 4.003 10 S 0.154 5.846 11 C 0.075 3.925 12 O -0.452 6.452 13 N -0.474 5.474 14 C -0.233 4.233 15 C 0.553 3.447 16 O -0.572 6.572 17 O -0.505 6.505 18 H 0.327 0.673 19 H 0.400 0.600 20 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.377 2.522 -0.009 2.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C -0.212 4.212 3 Si 0.835 3.165 4 H -0.176 1.176 5 H -0.168 1.168 6 H -0.180 1.180 7 C -0.364 4.364 8 H 0.144 0.856 9 C -0.127 4.127 10 S 0.398 5.602 11 C -0.243 4.243 12 O -0.253 6.253 13 N -0.204 5.204 14 C -0.356 4.356 15 C 0.405 3.595 16 O -0.468 6.468 17 O -0.316 6.316 18 H 0.141 0.859 19 H 0.255 0.745 20 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -1.305 3.292 0.106 3.543 hybrid contribution 1.870 -0.668 -0.198 1.996 sum 0.565 2.624 -0.093 2.686 Atomic orbital electron populations 1.68630 1.09362 1.34348 1.25615 1.27682 0.96021 1.06416 0.91074 0.84599 0.78826 0.72501 0.80614 1.17553 1.16776 1.17965 1.20406 0.98377 0.88934 1.28726 0.85591 1.23164 0.95059 0.96470 0.98012 1.85106 1.03350 0.93741 1.78002 1.25819 0.87312 0.96385 1.14794 1.84854 1.27914 1.20775 1.91726 1.65597 1.00709 1.37093 1.17051 1.18069 0.90291 0.88596 1.38602 1.19479 0.87500 0.79982 0.72541 1.90686 1.59660 1.43368 1.53109 1.85097 1.29729 1.30859 1.85908 0.85856 0.74469 0.73251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -32.25 10.77 21.94 0.24 -32.02 14 2 C 0.01 0.56 5.50 85.46 0.47 1.03 14 3 Si 1.02 31.94 29.57 68.60 2.03 33.97 14 4 H -0.25 -7.59 7.11 99.48 0.71 -6.89 14 5 H -0.24 -6.76 7.11 99.48 0.71 -6.06 14 6 H -0.26 -8.32 7.11 99.48 0.71 -7.61 14 7 C -0.33 -16.65 8.75 23.06 0.20 -16.45 14 8 H 0.13 6.54 5.62 -2.91 -0.02 6.52 14 9 C 0.00 -0.16 6.25 22.96 0.14 -0.02 14 10 S 0.15 7.56 20.49 -56.49 -1.16 6.41 14 11 C 0.07 3.69 8.85 130.52 1.15 4.84 14 12 O -0.45 -18.67 13.62 -84.36 -1.15 -19.82 14 13 N -0.47 -25.06 10.42 -301.69 -3.14 -28.21 14 14 C -0.23 -12.77 6.79 41.88 0.28 -12.49 14 15 C 0.55 28.06 8.28 70.07 0.58 28.64 14 16 O -0.57 -29.79 14.97 19.45 0.29 -29.50 14 17 O -0.51 -21.25 13.47 -58.32 -0.79 -22.03 14 18 H 0.33 11.77 8.29 -92.70 -0.77 11.00 14 19 H 0.40 12.94 9.06 -74.06 -0.67 12.27 14 20 H 0.41 12.11 8.98 -74.06 -0.67 11.45 14 Total: -1.00 -64.12 210.99 -0.85 -64.96 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.00 Total: 20.69 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 2.83 Total: 5.55 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: -2.91 Total: -60.23 kcal Atomic # 8 Polarization: -69.71 SS G_CDS: -1.64 Total: -71.35 kcal Atomic # 14 Polarization: 31.94 SS G_CDS: 2.03 Total: 33.97 kcal Atomic # 16 Polarization: 7.56 SS G_CDS: -1.16 Total: 6.41 kcal Total: -64.12 -0.85 -64.96 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260542178.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.180 kcal (2) G-P(sol) polarization free energy of solvation -64.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds